KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:15 2014 Check: 00 .. Name: ENSTTRP00000016249/1-1221 Len: 1227 Check: 8888 Weight: 1.00 Name: ENSBTAP00000008802/1-1224 Len: 1227 Check: 3555 Weight: 1.00 Name: ENSP00000309031/1-1222 Len: 1227 Check: 1003 Weight: 1.00 Name: bmy_11992T0/1-1224 Len: 1227 Check: 4774 Weight: 1.00 Name: BACU011117/1-1095 Len: 1227 Check: 8762 Weight: 1.00 // 1 50 ENSTTRP00000016249/1-1221 MSQPPPPP-- -PLPPPPPPP EAPQTPPSLA ATAAAAPGVL SKRRDRRILS ENSBTAP00000008802/1-1224 MSQPPPPP-- -PLPPPPPPP EAPQTPPSLA AAAAATPGGL SKRRDRRILS ENSP00000309031/1-1222 MSQPPPPP-- PPLPPPPPPP EAPQTPSSLA --SAAASGGL LKRRDRRILS bmy_11992T0/1-1224 MSQPPPPPPL PPPPPPPPPP EAPQTPPALA A-AAAAPGVL SKRRDRRILS BACU011117/1-1095 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000016249/1-1221 GSCPDPKCQA RLFFPASGSV SIECTECGQR HEQQQLLGVE EVTDPDVVLH ENSBTAP00000008802/1-1224 GSCPDPKCQA RLFFPASGSV SIECTECGQR HEQQQLLGVE EVTDPDVVLH ENSP00000309031/1-1222 GSCPDPKCQA RLFFPASGSV SIECTECGQR HEQQQLLGVE EVTDPDVVLH bmy_11992T0/1-1224 GSCPDPKCQA RLFFPASGSV SIECTECGQR HEQQQLLGVE EVTDPDVVLH BACU011117/1-1095 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000016249/1-1221 NLLRNALLGV TGAPKKNTEL VKVMGLSNYH CKLLSPILAR YGMDKQTGRA ENSBTAP00000008802/1-1224 NLLRNALLGV TGAPKKNTEL VKVMGLSNYH CKLLSPILAR YGMDKQTGRA ENSP00000309031/1-1222 NLLRNALLGV TGAPKKNTEL VKVMGLSNYH CKLLSPILAR YGMDKQTGRA bmy_11992T0/1-1224 NLLRNALLGV TGAPKKNTEL VKVMGLSNYH CKLLSPILAR YGMDKQTGRA BACU011117/1-1095 ---------- ---------- ---MGLSNYH CKLLSPILAR YGMDKQTGRA 151 200 ENSTTRP00000016249/1-1221 KLLRDMNQGE LFDCALLGDR AFLIEPEHVN TVGYGKDRSG SLLYLHDTLE ENSBTAP00000008802/1-1224 KLLRDMNQGE LFDCALLGDR AFLIEPEHVN TVGYGKDRSG SLLYLHDTLE ENSP00000309031/1-1222 KLLRDMNQGE LFDCALLGDR AFLIEPEHVN TVGYGKDRSG SLLYLHDTLE bmy_11992T0/1-1224 KLLRDMNQGE LFDCALLGDR AFLIEPEHVN TVGYGKDRSG SLLYLHDTLE BACU011117/1-1095 KLLRDMNQGE LFDCALLGDR AFLIEPEHVN TVGYGKDRSG SLLYLHDTLE 201 250 ENSTTRP00000016249/1-1221 DIKRANKSQE CLIPVHVDGD GHCLVHAVSR ALVGRELFWH ALRENLKQHF ENSBTAP00000008802/1-1224 DIKRANKSQE CLIPVHVDGD GHCLVHAVSR ALVGRELFWH ALRENLKQHF ENSP00000309031/1-1222 DIKRANKSQE CLIPVHVDGD GHCLVHAVSR ALVGRELFWH ALRENLKQHF bmy_11992T0/1-1224 DIKRANKSQE CLIPVHVDGD GHCLVHAVSR ALVGRELFWH ALRENLKQHF BACU011117/1-1095 DIKRANK--- ----MHVDGD GHCLVHAVSR ALVGRELFWH ALRENLKQHF 251 300 ENSTTRP00000016249/1-1221 QQHLARYQAL FHDFIDAAEW EDIINECDPL FVPPEGVPLG LRNIHIFGLA ENSBTAP00000008802/1-1224 QQHLARYQAL FHDFIDAAEW EDIINECDPL FVPPEGVPLG LRNIHIFGLA ENSP00000309031/1-1222 QQHLARYQAL FHDFIDAAEW EDIINECDPL FVPPEGVPLG LRNIHIFGLA bmy_11992T0/1-1224 QQHLARYQAL FHDFIDAAEW EDIINECDPL FVPPEGVPLG LRNIHIFGLA BACU011117/1-1095 QQHLARYQAL FHDFIDAAEW EDIINECDPL FVPPEGVPLG LRNIHIFGLA 301 350 ENSTTRP00000016249/1-1221 NVLHRPIILL DSLSGMRSSG DYSATFLPGL IPAEKCTGRD GHLNKPICIA ENSBTAP00000008802/1-1224 NVLHRPIILL DSLSGMRSSG DYSATFLPGL IPAEKCTGRD GHLNKPICIA ENSP00000309031/1-1222 NVLHRPIILL DSLSGMRSSG DYSATFLPGL IPAEKCTGKD GHLNKPICIA bmy_11992T0/1-1224 NVLHRPIILL DSLSGMRSSG DYSATFLPGL IPAEKCTGRD GHLNKPICIA BACU011117/1-1095 NVLHRPIILL DSLSGMRSSG DYSATFLPGL IPAEKCTGRD GHLNKPICIA 351 400 ENSTTRP00000016249/1-1221 WSSSGRNHYI PLVGIKGAAL PKLPMNLLPK AWGVPQDLIK KYIKLEEDGG ENSBTAP00000008802/1-1224 WSSSGRNHYI PLVGIKGAAL PKLPMNLLPK AWGVPQDLIK KYIKLEEDGG ENSP00000309031/1-1222 WSSSGRNHYI PLVGIKGAAL PKLPMNLLPK AWGVPQDLIK KYIKLEEDGG bmy_11992T0/1-1224 WSSSGRNHYI PLVGIKGAAL PKLPMNLLPK AWGVPQDLIK KYIKLEEDGG BACU011117/1-1095 WSSSGRNHYI PLVGIKGAAL PKLPMNLLPK AWGVPQDLIK KYIKLEEDGG 401 450 ENSTTRP00000016249/1-1221 CVIGGDRSLQ DKYLLRLVAA MEEVFMDIHG IHPSLVADVH QYFYRRTGVI ENSBTAP00000008802/1-1224 CVIGGDRSLQ DKYLLRLVAA MEEVFMDKHG IHPSLVADVH QYFYRRTGVI ENSP00000309031/1-1222 CVIGGDRSLQ DKYLLRLVAA MEEVFMDKHG IHPSLVADVH QYFYRRTGVI bmy_11992T0/1-1224 CVIGGDRSLQ DKYLLRLVAA MEEVFMDIHG IHPSLVADVH QYFYRRTGVI BACU011117/1-1095 CVIGGDRSLQ DKYLLRLVAA MEEVFMDIHG IHPSLVADVH QYFYRRTGVI 451 500 ENSTTRP00000016249/1-1221 GVQPEEVTAA AKKAVMDNRL HKCLLCGALS ELHVPPEWLA PGGKLYNLAK ENSBTAP00000008802/1-1224 GVQPEEVTAA AKKAVMDNRL HKCLLCGALS ELHVPPEWLA PGGKLYNLAK ENSP00000309031/1-1222 GVQPEEVTAA AKKAVMDNRL HKCLLCGALS ELHVPPEWLA PGGKLYNLAK bmy_11992T0/1-1224 GVQPEEVTAA AKKAVMDNRL HKCLLCGALS ELHVPPEWLA PGGKLYNLAK BACU011117/1-1095 GVQPEEVTAA AKKAVMDNRL HKCLLCGALS ELHVPPEWLA PGGKLYNLAK 501 550 ENSTTRP00000016249/1-1221 STHGQLRPDK NYSFPLNNLV CSYDSVKDVL VPDYGLSNLT ACNWCHGTSV ENSBTAP00000008802/1-1224 STHGQLRPDK NYSFPLNNLV CSYDSVRDVL VPDYGLSNLT ACNWCHGTSV ENSP00000309031/1-1222 STHGQLRTDK NYSFPLNNLV CSYDSVKDVL VPDYGMSNLT ACNWCHGTSV bmy_11992T0/1-1224 STHGQLRPDK NYSFPLNNLV CSYDSVKDVL VPDYGLSNLT ACNWCHGTSV BACU011117/1-1095 STHGQLRPDK NYSFPLNNLV CSYDSVKDVL VPDYGLSNLT ACNWCHGTSV 551 600 ENSTTRP00000016249/1-1221 RRVRGDGSIV YLDGDRTNAR STGGKCGCGF KHFWDGKEYD NLPEAFPITL ENSBTAP00000008802/1-1224 RRVRGDGSIV YLDGDRTNSR STGGKCGCGF KHFWDGKEYD NLPEAFPITL ENSP00000309031/1-1222 RKVRGDGSIV YLDGDRTNSR STGGKCGCGF KHFWDGKEYD NLPEAFPITL bmy_11992T0/1-1224 RRVRGDGSIV YLDGDRTNAR STGGKCGCGF KHFWDGKEYD NLPEAFPITL BACU011117/1-1095 RRVRGDGSIV YLDGDRTNAR STGGKCGCGF KHFWDGKEYD NLPEAFPITL 601 650 ENSTTRP00000016249/1-1221 EWGGRVVRET VYWFQYESDA SLNSNVYDVA MKLVTKHFPG EFGSEILVQK ENSBTAP00000008802/1-1224 EWGGRVVRET VYWFQYESDA SLNSNVYDVA MKLVTKHFPG EFGSEILVQK ENSP00000309031/1-1222 EWGGRVVRET VYWFQYESDS SLNSNVYDVA MKLVTKHFPG EFGSEILVQK bmy_11992T0/1-1224 EWGGRVVRET VYWFQYESDA SLNSNVYDVA MKLVTKHFPG EFGSEILVQK BACU011117/1-1095 EWGGRVVRET VYWFQYESDA SLNSNVYDVA MKLVTKHFPG EFGSEILVQK 651 700 ENSTTRP00000016249/1-1221 VVHTILHQTA KKNPDDYTPV NIDGAHAQRV GDVQGQESES QLPTKIILTG ENSBTAP00000008802/1-1224 VVHTILHQTA KKNPDDYTPV NIDGAHAQRF GDVQGQESES PLPTKIILTG ENSP00000309031/1-1222 VVHTILHQTA KKNPDDYTPV NIDGAHAQRV GDVQGQESES QLPTKIILTG bmy_11992T0/1-1224 VVHTILHQTA KKNPDDYTPV NIDGAHAQRV GDVQGQESES QLPTKIILTG BACU011117/1-1095 VVHTILHQTA KKNPDDYTPV NIDGAHAQRV GDVQGQESES QLPTKIILTG 701 750 ENSTTRP00000016249/1-1221 QKTKTLHKEE LNMSKTERTI QQNITEQASV MQKRKTEKLK QEQKGQPRTV ENSBTAP00000008802/1-1224 QKAKTLHKEE LNMSKTERTI QQNITEQASV MQKRKTEKLK QEQKGQPRTV ENSP00000309031/1-1222 QKTKTLHKEE LNMSKTERTI QQNITEQASV MQKRKTEKLK QEQKGQPRTV bmy_11992T0/1-1224 QKTKTLHKEE LNMSKTERTI QQNITEQASV MQKRKTEKLK QEQKGQPRTV BACU011117/1-1095 QKTKTLHKEE LNMSKTERTI QQNITEQASV MQKRKTEKLK QEQKGQPRTV 751 800 ENSTTRP00000016249/1-1221 SPSTVRDGPS SAPATPTKAP YSPTTSKEKK IRITTNDGRQ SMVTLKSSTT ENSBTAP00000008802/1-1224 SPSTVRDGPS SAPATPTKAP YSPTTSKEKK IRITTNDGRQ SMVTLKPSTT ENSP00000309031/1-1222 SPSTIRDGPS SAPATPTKAP YSPTTSKEKK IRITTNDGRQ SMVTLKSSTT bmy_11992T0/1-1224 SPSTVRDGPS SAPATPTKAP YSPTTSKEKK IRITTNDGRQ SMVTLKSSTT BACU011117/1-1095 SPSTVRDSPS SAPATPTKAP YSPTTSKEKK IRITTNDGRQ SMVTLKSSTT 801 850 ENSTTRP00000016249/1-1221 FFELQESIAR EFNIPPYLQC IRYGFPPKEL MPPQAGMEKX XXXXXXXXXX ENSBTAP00000008802/1-1224 FFELQESIAR EFNIPPYLQC IRYGFPPKEL MPPQAGMEKE PVPLQHGDRI ENSP00000309031/1-1222 FFELQESIAR EFNIPPYLQC IRYGFPPKEL MPPQAGMEKE PVPLQHGDRI bmy_11992T0/1-1224 FFELQESIAR EFNIPPYLQC IRYGFPPKEL MPPQAGMEKE PVPLQHGDRI BACU011117/1-1095 FFELQESIAR EFNIPPYLQC IRYGFPPKEL MPPQAGMEKE PVPLQHGDRI 851 900 ENSTTRP00000016249/1-1221 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXKKMYSL ENSBTAP00000008802/1-1224 TIEILKSKAE GGQSAAAHSA HTMKPEDSAV TGRLSSKELQ EQADKEMYSL ENSP00000309031/1-1222 TIEILKSKAE GGQSAAAHSA HTVKQEDIAV TGKLSSKELQ EQAEKEMYSL bmy_11992T0/1-1224 TIEILKSKAE GGQSAAAHSA HTVKQEESAV TGKLSSKELQ EQADKEMYSL BACU011117/1-1095 TIEILKSKAE GGQSSAAHSA HTVKQEESAV TGKLSSKELQ EQADKEMYSL 901 950 ENSTTRP00000016249/1-1221 CLLATLMGED VWSYAKGLPH MFQQGGVFYN IM-KKTMGMA DGKHCTFPHL ENSBTAP00000008802/1-1224 CLLATLMVET VWSKGQRLPH YFVSGGVFYK ILKKKTQSMA DGKHCTFPHL ENSP00000309031/1-1222 CLLATLMGED VWSYAKGLPH MFQQGGVFYS IM-KKTMGMA DGKHCTFPHL bmy_11992T0/1-1224 CLLATLMGED VWSYAKGLPH MFQQGGVFYN IM-KKTMGMA DGKHCTFPHL BACU011117/1-1095 CLLATLMGED VWSYAKGLPH MFQQGGVFYN IM-KKTMGMA DGKHCTFPHL 951 1000 ENSTTRP00000016249/1-1221 PGKTFVYNAS EDRLELCVDA AGHFPIGPDV EDLVKEAVSQ VRAEATTRSR ENSBTAP00000008802/1-1224 PGKTFVYNAS EDRLELCVDA AGHFPIGPDV EDLVKEAVSQ VRAEATTRSR ENSP00000309031/1-1222 PGKTFVYNAS EDRLELCVDA AGHFPIGPDV EDLVKEAVSQ VRAEATTRSR bmy_11992T0/1-1224 PGKTFVYNAS EDRLELCVDA AGHFPIGPDV EDLVKEAVSQ VRAEATTRSR BACU011117/1-1095 PGKTFVYNAS EDRLELCVDA AGHFPIGPDV EDLVKEAVSQ VRAEATTRSR 1001 1050 ENSTTRP00000016249/1-1221 ESSPSHGLLK LGSGGVVKKK SEQLHNVTAF QGKGHSLGTA SSTPHLEPRA ENSBTAP00000008802/1-1224 ESSPSHGLLK LGSGGVVKKK SEQLHNVTAF QGKGHSLGTA SSTPHLDPRA ENSP00000309031/1-1222 ESSPSHGLLK LGSGGVVKKK SEQLHNVTAF QGKGHSLGTA SGNPHLDPRA bmy_11992T0/1-1224 ESSPSHGLLK LGSGGVVKKK SEQLHNVTAF QGKGHSLGTA SSTPHLEPRA BACU011117/1-1095 ESSPSHGLLK LGSGGVVKKK SEQLHNVTAF QGKGHSLGTA SSTPHLEPRA 1051 1100 ENSTTRP00000016249/1-1221 RETPVVRKQT TGTHFS-SSI KTEPSVFTAA PSNSELIRIA PGVVTMRDSR ENSBTAP00000008802/1-1224 RETPVVRKHT TGTDFSSSSI KTEPSVFTAA PSNSELIRIA PGVVTTRDSR ENSP00000309031/1-1222 RETSVVRKHN TGTDFSNSST KTEPSVFTAS SSNSELIRIA PGVVTMRDGR bmy_11992T0/1-1224 RETPVVRKQT TGTHFS-SSI KTEPSVFTAA PSNSELIRIA PGVVTMRDSR BACU011117/1-1095 RETPVVRKQT TGTHFS-SSI KTEPSVFTAA PSNSELIRIA PGVVTMRDSR 1101 1150 ENSTTRP00000016249/1-1221 QLDPDMVEAQ RKKLQ-MVFS IQASMDKHLR DQSTEQSLSD LPQRNVEVVS ENSBTAP00000008802/1-1224 QLDPDMVEAQ RKKLQEMVSS IQASMDKHLR DQSTEQSPSD PPQRKVEAVS ENSP00000309031/1-1222 QLDPDLVEAQ RKKLQEMVSS IQASMDRHLR DQSTEQSPSD LPQRKTEVVS bmy_11992T0/1-1224 QLDPDMVEAQ RKKLQEMVSS IQASMDKHLR DQSTEQSPSD LPQRKVEVVS BACU011117/1-1095 QLDPDMVEAQ RKKLQEMVSS IQASMDKHLR DQSTEQSPSD LPQRKVEVVS 1151 1200 ENSTTRP00000016249/1-1221 PSVKSGSLQT GLPESFSLTG GTENLNTETT DGCVAEALGA ALATRSKAQK ENSBTAP00000008802/1-1224 SSVKSGSLQT GSPESFSPTG DTENLNIETA DGCVAEALEA AFAERSEAQK ENSP00000309031/1-1222 SSAKSGSLQT GLPESFPLTG GTENLNTETT DGCVADALGA AFATRSKAQR bmy_11992T0/1-1224 SSVKSGTLQT GLPESFSLTG GTENLNTETT DGCVAEAVGA AFATRSKAQK BACU011117/1-1095 SSVKSGTLQT GLPESFSLTG GTENLNTETT DGCVAEAVGA AFATRSKAQK 1201 1250 ENSTTRP00000016249/1-1221 GNSVEEPEEM DSQDAEMTNT TEPMDHS ENSBTAP00000008802/1-1224 GSSVEEPEEM DSQDAEMTNT TEPMDHS ENSP00000309031/1-1222 GNSVEELEEM DSQDAEMTNT TEPMDHS bmy_11992T0/1-1224 GNSMEEPEEM DSQDAEMTNT TEPMDHS BACU011117/1-1095 GNSVEEPEEM DSQDAEMTNT TEPMDHS