KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:20 2014 Check: 00 .. Name: bmy_10990T0/1-438 Len: 569 Check: 2673 Weight: 1.00 Name: ENSTTRP00000011161/1-502 Len: 569 Check: 6491 Weight: 1.00 Name: ENSP00000369217/1-557 Len: 569 Check: 99 Weight: 1.00 Name: ENSBTAP00000008822/1-555 Len: 569 Check: 3204 Weight: 1.00 Name: BACU019853/1-466 Len: 569 Check: 3757 Weight: 1.00 // 1 50 bmy_10990T0/1-438 -----MGKFC RKGGQQCPSI IFAAVDQNFN NN-------- ---------- ENSTTRP00000011161/1-502 MDSDEGYNYE FDEDEECSEE DSGAEEEEDE DDDEPX---- ---------- ENSP00000369217/1-557 MDSDEGYNYE FDEDEECSEE DSGAEEEEDE DDDEPDDDTL DLGEVELVEP ENSBTAP00000008822/1-555 MDSDEGYNYE FDEDEECSEE DSGAEEEEDE DDDEPDDDNL DLGEVELVEP BACU019853/1-466 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_10990T0/1-438 ---------- ---------- ---------- ---------- -GYQK----K ENSTTRP00000011161/1-502 ---------- ---------- ---------- ---------- -GHEQEEDYR ENSP00000369217/1-557 GLGVGGERDG LLCGETGGGG GSALGPGGGG GGGGGGGGGG PGHEQEEDYR ENSBTAP00000008822/1-555 GLGVGGERDG LLCGETGGGG GSALGP--GG GGGGGGGGGG PGHEQEEDYR BACU019853/1-466 ---------- ---------- ---------- ---------- -GHEQEEDYR 101 150 bmy_10990T0/1-438 MEAVNVENIG DGVGRILAKN IKIFQEAKDH VLT-ALMGDI VLFTTVFCQE ENSTTRP00000011161/1-502 YEVLTAE--- ----QILQHM VECIREVNEV IQNPATITRI LLSHFNWDKE ENSP00000369217/1-557 YEVLTAE--- ----QILQHM VECIREVNEV IQNPATITRI LLSHFNWDKE ENSBTAP00000008822/1-555 YEVLTAE--- ----QILQHM VECIREVNEV IQNPATITRI LLSHFNWDKE BACU019853/1-466 YEVLTAE--- ----QILQHM VECIREVNEV IQNPATITRI LLSHFNWDKE 151 200 bmy_10990T0/1-438 VYSSVETLYF DGNLEKLFAE CHVINPSKKS RTRQMNTRSS AQDMPCQICY ENSTTRP00000011161/1-502 ---KLMERYF DGNLEKLFAE CHVINPSKKS RTRQMNTRSS AQDMPCQICY ENSP00000369217/1-557 ---KLMERYF DGNLEKLFAE CHVINPSKKS RTRQMNTRSS AQDMPCQICY ENSBTAP00000008822/1-555 ---KLMERYF DGNLEKLFAE CHVINPSKKS RTRQMNTRSS AQDMPCQICY BACU019853/1-466 ---KLMERYF DGNLEKLFAE CHVINPSKKS RTRQMNTRSS AQDMPCQICY 201 250 bmy_10990T0/1-438 LNYPNSNKYF TGLECGHKFC MQCWSEYLTT KIMEEGMGQC L-------DP ENSTTRP00000011161/1-502 LNYPNS--YF TGLECGHKFC MQCWSEYLTT KIMEEGMGQT ISCPAHGCDI ENSP00000369217/1-557 LNYPNS--YF TGLECGHKFC MQCWSEYLTT KIMEEGMGQT ISCPAHGCDI ENSBTAP00000008822/1-555 LNYPNS--YF TGLECGHKFC MQCWSEYLTT KIMEEGMGQT ISCPAHGCDI BACU019853/1-466 LNYPNS--YF TGLECGHKFC MQCWSEYLTT KIMEEGMGQT ISCPAHGCDI 251 300 bmy_10990T0/1-438 YTDINR--RL ITDSKVKLKY QHLITNSFVE CNRLLKWCPA PDCHHVVKVQ ENSTTRP00000011161/1-502 LVDDNTVMRL ITDSKVKLKY QHLITNSFVE CNRLLKWCPA PDCHHVVKVQ ENSP00000369217/1-557 LVDDNTVMRL ITDSKVKLKY QHLITNSFVE CNRLLKWCPA PDCHHVVKVQ ENSBTAP00000008822/1-555 LVDDNTVMRL ITDSKVKLKY QHLITNSFVE CNRLLKWCPA PDCHHVVKVQ BACU019853/1-466 LVDDNTVMRL ITDSKVKLKY QHLITNSFVE CNRLLKWCPA PDCHHVVKVQ 301 350 bmy_10990T0/1-438 YPDAKPVRCK CGRQFCFNCG ENWHDPVKCK WLKKWIKKCD DDSETSNWIA ENSTTRP00000011161/1-502 YPDAKPVRCK CGRQFCFNCG ENWHDPVKCK WLKKWIKKCD DDSETSNWIA ENSP00000369217/1-557 YPDAKPVRCK CGRQFCFNCG ENWHDPVKCK WLKKWIKKCD DDSETSNWIA ENSBTAP00000008822/1-555 YPDAKPVRCK CGRQFCFNCG ENWHDPVKCK WLKKWIKKCD DDSETSNWIA BACU019853/1-466 YPDAKPVRCK CGRQFCFNCG ENWHDPVKCK WLKKWIKKCD DDSETSNWIA 351 400 bmy_10990T0/1-438 ANTKECPKCH VTIEKDGGCN HMVCRNQNCK AEFCW----- ---------- ENSTTRP00000011161/1-502 ANTKECXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXYN ENSP00000369217/1-557 ANTKECPKCH VTIEKDGGCN HMVCRNQNCK AEFCWVCLGP WEPHGSAWYN ENSBTAP00000008822/1-555 ANTKECPKCH VTIEKDGGCN HMVCRNQNCK AEFCWVCLGP WEPHGSAWYN BACU019853/1-466 ANTKECPKCH VTIEKDGGCN HMVCRNQNCK AEFCWVCLGP WEPHGSAWYN 401 450 bmy_10990T0/1-438 ---------- ---------- ---------- --------SL RFEHKLYAQV ENSTTRP00000011161/1-502 CNRYNEDDAK AARDAQERSR AALQRYLFYC NRYMNHMQSL RFEHKLYAQV ENSP00000369217/1-557 CNRYNEDDAK AARDAQERSR AALQRYLFYC NRYMNHMQSL RFEHKLYAQV ENSBTAP00000008822/1-555 CNRYNEDDAK AARDAQERSR AALQRYLFYC NRYMNHMQSL RFEHKLYAQV BACU019853/1-466 CNRYNEDDAK AARDAQERSR AALQRYLFYC NRYMNHMQSL RFEHKLYAQV 451 500 bmy_10990T0/1-438 KQKMEEMQQH NMSWIEVQFL KKAVDVLCQC RATLMYTYVF AFYLKKNNQS ENSTTRP00000011161/1-502 KQKMEEMQQH NMSWIEVQFL KKAVDVLCQC RATLMYTYVF AFYLKKNNQS ENSP00000369217/1-557 KQKMEEMQQH NMSWIEVQFL KKAVDVLCQC RATLMYTYVF AFYLKKNNQS ENSBTAP00000008822/1-555 KQKMEEMQQH NMSWIEVQFL KKAVDVLCQC RATLMYTYVF AFYLKKNNQS BACU019853/1-466 KQKMEEMQQH NMSWIEVQFL KKAVDVLCQC RATLMYTYVF AFYLKKNNQS 501 550 bmy_10990T0/1-438 IIFENNQADL ENATEVLSGY LERDISQDSL QDIKQKVQDK YRYCESRRRV ENSTTRP00000011161/1-502 IIFENNQADL ENATEVLSGY LERDISQDSL QDIKQKVQDK YRYCESRRRV ENSP00000369217/1-557 IIFENNQADL ENATEVLSGY LERDISQDSL QDIKQKVQDK YRYCESRRRV ENSBTAP00000008822/1-555 IIFENNQADL ENATEVLSGY LERDISQDSL QDIKQKVQDK YRYCESRRRV BACU019853/1-466 IIFENNQADL ENATEVLSGY LERDISQDSL QDIKQKVQDK YRYCESRRRV 551 600 bmy_10990T0/1-438 LLQHVHEGYE KDLWEYIED ENSTTRP00000011161/1-502 LLQHVHEGYE KDLWEYIED ENSP00000369217/1-557 LLQHVHEGYE KDLWEYIED ENSBTAP00000008822/1-555 LLQHVHEGYE KDLWEYIED BACU019853/1-466 LLQHVHEGYE KDLWEYIED