KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:21 2014 Check: 00 .. Name: BACU013062/1-787 Len: 844 Check: 2631 Weight: 1.00 Name: ENSP00000368566/1-722 Len: 844 Check: 5695 Weight: 1.00 Name: ENSBTAP00000008826/1-697 Len: 844 Check: 7400 Weight: 1.00 Name: bmy_08339T0/1-373 Len: 844 Check: 2740 Weight: 1.00 Name: ENSTTRP00000006588/1-722 Len: 844 Check: 4471 Weight: 1.00 // 1 50 BACU013062/1-787 ---------- ---------- -----MQTQE ILRVLRLPEL GDLGQFFRSL ENSP00000368566/1-722 MLTFFLVSGG SLWLFVEFVL SLLEKMQTQE ILRILRLPEL GDLGQFFRSL ENSBTAP00000008826/1-697 ---------- ---------- -----MQTQE ILRMLRLPEL ADLGQFFRSL bmy_08339T0/1-373 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006588/1-722 MLTFFLVSGG SLWLFSEFIL SLLEKMQTQE ILRMLRLPEL GDLGQFFRSL 51 100 BACU013062/1-787 SATTLVSVGA LAAILAYWFT HRPKALQPPC NLLMQSEEVE DSGGARRSVI ENSP00000368566/1-722 SATTLVSMGA LAAILAYWFT HRPKALQPPC NLLMQSEEVE DSGGARRSVI ENSBTAP00000008826/1-697 SATTLVSMGA LAAILAYWFT HRPKALKPPC NLLMQSEEVE DSGGARRSVI bmy_08339T0/1-373 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006588/1-722 SATTLVSMGA LAAILAYWFT HRPKALQPPC NLLMQSEEVE DSGGARRSVI 101 150 BACU013062/1-787 GDGPQLLTHY YDDARTMYEV FRRGLSISGN GPCLGFRNPK QPYQWLSYQE ENSP00000368566/1-722 GSGPQLLTHY YDDARTMYQV FRRGLSISGN GPCLGFRKPK QPYQWLSYQE ENSBTAP00000008826/1-697 GDSPELFTHY YDDARTMYEV FHRGLRISGN GPCLGFRNPK QPYQWLSYQE bmy_08339T0/1-373 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006588/1-722 GDGPQLLTHY YDDARTMYEV FRRGLSISGN GPCLGFRNPK KPYQWLSYQE 151 200 BACU013062/1-787 VADRAEFLGS GLLQHNCKPC TDQFIGVFAQ NRPEWIIAEL ACYTYSMVVI ENSP00000368566/1-722 VADRAEFLGS GLLQHNCKAC TDQFIGVFAQ NRPEWIIVEL ACYTYSMVVV ENSBTAP00000008826/1-697 VADRAEFLGS GLLQHNCKPC TDQFIGVFAQ NRPEWIIAEL ACYTYSMVVV bmy_08339T0/1-373 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006588/1-722 VADRAEFLGS GLLQHNCKPC TDQFIGIFAQ NRPEWIIAEL ACYTYSMVVV 201 250 BACU013062/1-787 PLYDTLGPGA IRYIIDTADI STVIVDKPQK AVVLLEHVER KETPGLKLII ENSP00000368566/1-722 PLYDTLGPGA IRYIINTADI STVIVDKPQK AVLLLEHVER KETPGLKLII ENSBTAP00000008826/1-697 PLYDTLGPGA VRYIINTADI STVIVDKPQK AVVLLEHVER KETPGLKLII bmy_08339T0/1-373 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006588/1-722 PLYDTLGPGA IRYIIDTADI STVIVDKPQK AVVLLEHVER KETPGLKLII 251 300 BACU013062/1-787 LMEPFEEALK DRGQDCGVVI KSMQAVEDCG QRNHHVPVPP KPSDLSIVCF ENSP00000368566/1-722 LMDPFEEALK ERGQKCGVVI KSMQAVEDCG QENHQAPVPP QPDDLSIVCF ENSBTAP00000008826/1-697 LMEPFEEALK DRGQECGVVI KSMQDVEDCG QQNHCDPVPP KPSDLSIVCF bmy_08339T0/1-373 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006588/1-722 LMEPFEEALK DRGQDCGVVV KSMQAVEDCG QRNHHVPVPP KPHDLSIVCF 301 350 BACU013062/1-787 TSGTTGNPKG AMLTHGNVVA DFSGFLKVTE VNKVDSPMQK VIFPRQDDVL ENSP00000368566/1-722 TSGTTGNPKG AMLTHGNVVA DFSGFLKVTE ---------K VIFPRQDDVL ENSBTAP00000008826/1-697 TSGTTGNPKG AMLTHGNVVA DFSGFLKVTE ---------K VIFPRQDDVL bmy_08339T0/1-373 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006588/1-722 TSGTTGNPKG AMLTHGNVVA DFSGFLKVTE ---------K VIFPRQDDVL 351 400 BACU013062/1-787 ISFLPLAHMF ERVIQSQWAP TCADVHISYL PLAHMFERMV QSVVYCHGGR ENSP00000368566/1-722 ISFLPLAHMF ERVI------ ---------- ---------- QSVVYCHGGR ENSBTAP00000008826/1-697 ISFLPLAHMF ERVI------ ---------- ---------- QSVVYCHGGR bmy_08339T0/1-373 --------MF ERVI------ ---------- ---------- QSVVYCHGGR ENSTTRP00000006588/1-722 ISFLPLAHMF ERVI------ ---------- ---------- QSVVYCHGGR 401 450 BACU013062/1-787 VGFFQGDIRL LSDDMKALCP TIFPVVPRLL NRMYDKIFSQ ADTSLKRWLL ENSP00000368566/1-722 VGFFQGDIRL LSDDMKALCP TIFPVVPRLL NRMYDKIFSQ ANTPLKRWLL ENSBTAP00000008826/1-697 VGFFQGDIRL LSDDMKALHP TIFPVVPRLL NRMYDKIFSQ ADTPLKRWLL bmy_08339T0/1-373 VGFFQGDIRL LSDDMKALCP TIFPVVPRLL NRMYDKIFSQ ADTSLKRWLL ENSTTRP00000006588/1-722 VGFFQGDIRL LSDDMKALCP TIFPVVPRLL NRMYDKIFSQ ADTSLKRWLL 451 500 BACU013062/1-787 EFAAKRKQAE VRSGIIRNDS IWDELFFHKI ---------- ---------- ENSP00000368566/1-722 EFAAKRKQAE VRSGIIRNDS IWDELFFNKI QASLGGCVRM IVTGAAPASP ENSBTAP00000008826/1-697 EFAAKRKQAE VRSGIIRNDS IWDELFFHKI QASLGGCVRM IVTGAAPASP bmy_08339T0/1-373 EFAAKRKQAE VRSGIIRNDS IWDELFFHKI QAGLGGCVRM IVTGAAPASP ENSTTRP00000006588/1-722 EFAAKRKQAE VQSGIIRNDS IWDELFFHKI QASLGGCVRM IVTGAAPASP 501 550 BACU013062/1-787 ---------- --QVYEGYGQ TECTAGCTFT TPGDWTSGHV GAPLPCNHIK ENSP00000368566/1-722 TVLGFLRAAL GCQVYEGYGQ TECTAGCTFT TPGDWTSGHV GAPLPCNHIK ENSBTAP00000008826/1-697 TVLGFLRAAL GCQVYEGYGQ TECTAGCTFT TPGDWTSGHV GAPLPCNHIK bmy_08339T0/1-373 TVLGFLRAAL GCQVYEGYGQ TECTAGCTFT TPGDWTSGHV GAPLPCNHIK ENSTTRP00000006588/1-722 TVLGFLRAAL GCQVYEGYGQ TECTAGCTFT TPGDWTSGHV GAPLPCNHIK 551 600 BACU013062/1-787 LVDVKELNYW TSKGEGEICV RGPNVFKGYL KDPERTKEAL DDDGWLHTGD ENSP00000368566/1-722 LVDVEELNYW ACKGEGEICV RGPNVFKGYL KDPDRTKEAL DSDGWLHTGD ENSBTAP00000008826/1-697 LVDVEELNYW TSKGEGEICV RGPNVFKGYL KDPERTKEAL DDDGWLHTGD bmy_08339T0/1-373 LVDVKELNYW TSKGEGEICV RGPNVFKGYL KDPERTKEAL DDDGWLHTGD ENSTTRP00000006588/1-722 LVDVKELNYW TSKGEGEICV RGPNVFKGYL KDPERTKEAL DDDGWLHTGD 601 650 BACU013062/1-787 IGKWLPAGTL KXXXXXXXXX XXXXIDRKKH IFKLAQGEYI APEMIENIYI ENSP00000368566/1-722 IGKWLPAGTL K--------- ---IIDRKKH IFKLAQGEYV APEKIENIYI ENSBTAP00000008826/1-697 IGKWLPTGTL K--------- ---IIDRKKH IFKLAQGEYV APEMIENIYI bmy_08339T0/1-373 IGKWLPAGTL K--------- ---IIDRKKH IFKLAQGEYI APEMIENIYI ENSTTRP00000006588/1-722 IGKWLPAGTL K--------- ---IIDRKKH IFKLAQGEYI APEMIENIYI 651 700 BACU013062/1-787 RSEPVAQVYV HGDSLKAFLV GIVVPDPEVM PSWAQKRGIE GTYAELCTNK ENSP00000368566/1-722 RSQPVAQIYV HGDSLKAFLV GIVVPDPEVM PSWAQKRGIE GTYADLCTNK ENSBTAP00000008826/1-697 RSEPVAQVYV HGDSLKAFLV GIVVPDAEVM PSWAQKRGIE GTYAELCTNK bmy_08339T0/1-373 RSEPVAQVYV HGDSLKAFLV GIVVPDPEVM PSWAQKRGIE GTYAELCTNK ENSTTRP00000006588/1-722 RSEPVAQMYV HGDSLKAFLV GIVVPDPEVM PSWAQKRGIE GTYAELCTNK 701 750 BACU013062/1-787 ELKKAILEDM VRLGKESGLH SFEQESVTDD LQVDSSLSNS ERVSGLSLQH ENSP00000368566/1-722 DLKKAILEDM VRLGKESGLH SFEQ------ ---------- --VKAIHIHS ENSBTAP00000008826/1-697 ELKKAILEDM VRLGQESGLH SFEQ------ ---------- --VKAIHIHS bmy_08339T0/1-373 ELKKAILEDM VRLGKESGLH SFEQ------ ---------- --VKAIHIHS ENSTTRP00000006588/1-722 ELRKAILEDM VRLGKESGLH SFEQ------ ---------- --VKAIHIHS 751 800 BACU013062/1-787 DISSSLLSYS ITDSYTEYKS FEESLSSFPS PELFRGSDYL DWECPMLEEN ENSP00000368566/1-722 DM------FS VQNG------ ---------- ---------- -----LLTPT ENSBTAP00000008826/1-697 DM------FS VQNG------ ---------- ---------- -----LLTPT bmy_08339T0/1-373 DM------FS VQNG------ ---------- ---------- -----LLTPT ENSTTRP00000006588/1-722 DM------FS VQNG------ ---------- ---------- -----LLTPT 801 850 BACU013062/1-787 MLCKNSTLLD TSKAVPIEKA VQFSNLSAIL GTSSEDYQKC HRKV ENSP00000368566/1-722 LKAKRPELRE YFKK------ -QIEELYSI- ---------- --SM ENSBTAP00000008826/1-697 LKAKRPELRE YFKK------ -QIEELYST- ---------- --SM bmy_08339T0/1-373 LKAKRPELRE YFXK------ -QIEELYSI- ---------- --SM ENSTTRP00000006588/1-722 LKAKRPELRE YFKK------ -QIEELYSI- ---------- --SM