KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:21 2014 Check: 00 .. Name: bmy_07417T0/1-160 Len: 363 Check: 4157 Weight: 1.00 Name: ENSBTAP00000008831/1-319 Len: 363 Check: 3014 Weight: 1.00 Name: ENSP00000377280/1-319 Len: 363 Check: 3426 Weight: 1.00 Name: ENSTTRP00000012504/1-319 Len: 363 Check: 3284 Weight: 1.00 Name: BACU015238/1-363 Len: 363 Check: 5259 Weight: 1.00 // 1 50 bmy_07417T0/1-160 MGQGLWRVAR NQQLQQEGYS EQGYLSREQG RRMAASSIAN TSHRKQVQGG ENSBTAP00000008831/1-319 MGQGLWRVAR NQQLQQEGYG EQGYLSREQS RRVAASNMSH TSHRKHVQGG ENSP00000377280/1-319 MGQGLWRVVR NQQLQQEGYS EQGYLTREQS RRMAASNISN TNHRKQVQGG ENSTTRP00000012504/1-319 MGQGLWRVAR NQQLQQEGYS EQGYLSREQG RRMAASSISN TSHRKQVQGG BACU015238/1-363 MGQGLWRVAR NQQLQQQGYS EQGYLSREQG RRMAASSIAN TSHRKQVQGG 51 100 bmy_07417T0/1-160 IDIYHLLKTR KSKEQEGFIN LEMLPPELSL TILSYLNATD LCLASCVWQD ENSBTAP00000008831/1-319 IDIYHLLKTR KSKEQEGFIN LEMLPPELSF TILSYLNATD LCLASCVWQD ENSP00000377280/1-319 IDIYHLLKAR KSKEQEGFIN LEMLPPELSF TILSYLNATD LCLASCVWQD ENSTTRP00000012504/1-319 IDIYHLLKTR KSKEQEGFIN LEMLPPELSF TILSYLNATD LCLASCVWQD BACU015238/1-363 IDIYHLLKTR KSKEQEGFIN LEMLPPELSL TILSYLNATD LCLASCVWQD 101 150 bmy_07417T0/1-160 LANDELLWQG LCKSTWGHCS IYNKNPPLGF SFRKLYMQLD EGSLTFNANP ENSBTAP00000008831/1-319 LANDELLWQG LCKSTWGHCS IYNKNPPLGF SFRKLYMQLD EGSLTFNANP ENSP00000377280/1-319 LANDELLWQG LCKSTWGHCS IYNKNPPLGF SFRKLYMQLD EGSLTFNANP ENSTTRP00000012504/1-319 LANDELLWQG LCKSTWGHCS IYNKNPPLGF SFRKLYMQLD EGSLTFNANP BACU015238/1-363 LANDELLWQG LCKSTWGHCS IYNKNPPLGF SFRKLYMQLD EGSLTFNANP 151 200 bmy_07417T0/1-160 DE-------- ---------- ---------- ---------- ---------- ENSBTAP00000008831/1-319 DE-------- ---------- ---------- ---------- ------GVNY ENSP00000377280/1-319 DE-------- ---------- ---------- ---------- ------GVNY ENSTTRP00000012504/1-319 DE-------- ---------- ---------- ---------- ------GVNY BACU015238/1-363 DEQASLKYYK NKNTYSHRER DSPKDIVHVT DMGNQTPQQL LAVAYGGVNY 201 250 bmy_07417T0/1-160 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008831/1-319 FMSKGILDDS PKEIAKFIFC TRTLNWKKLR IYLDERRDVL DDLVTLHNFR ENSP00000377280/1-319 FMSKGILDDS PKEIAKFIFC TRTLNWKKLR IYLDERRDVL DDLVTLHNFR ENSTTRP00000012504/1-319 FMSKGILDDS PKEIAKFIFC TRTLNWKKLR IYLDERRDVL DDLVTLHNFR BACU015238/1-363 FMSKGILDDS PKEIAKFIFC TRTLNWKKLR IYLDERRDVL DDLVTLHNFR 251 300 bmy_07417T0/1-160 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008831/1-319 NQFLPNALRE FFRHIHAPEE RGEYLETLIT KFSHRFCACN PDLMRELGLS ENSP00000377280/1-319 NQFLPNALRE FFRHIHAPEE RGEYLETLIT KFSHRFCACN PDLMRELGLS ENSTTRP00000012504/1-319 NQFLPNALRE FFRHIHAPEE RGEYLETLIT KFSHRFCACN PDLMRELGLS BACU015238/1-363 NQFLPNALRE FFRHIHAPEE RGEYLETLIT KFSHRFCACN PDLMRELGLS 301 350 bmy_07417T0/1-160 ---------- ---------- ---------- ---------- --VSEEFE-- ENSBTAP00000008831/1-319 PDAVYVLCYS LILLSIDLTS PHVKNKMSKR EFIRNTRRAA QNISEDFVGH ENSP00000377280/1-319 PDAVYVLCYS LILLSIDLTS PHVKNKMSKR EFIRNTRRAA QNISEDFVGH ENSTTRP00000012504/1-319 PDAVYVLCYS LILLSIDLTS PHVKNKMSKR EFIRNTRRAA QNISEDFVGH BACU015238/1-363 PDAVYVLCYS LILLSIDLTS PHVKNKMSKR EFIRNTRRAA QNISEDFVGH 351 400 bmy_07417T0/1-160 -----YL--- --- ENSBTAP00000008831/1-319 LYDNIYLIGH VAA ENSP00000377280/1-319 LYDNIYLIGH VAA ENSTTRP00000012504/1-319 LYDNIYLIGH VAA BACU015238/1-363 LYDNIYLIGH VAA