KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:36:22 2014 Check: 00 .. Name: ENSBTAP00000008834/1-732 Len: 739 Check: 8214 Weight: 1.00 Name: BACU006353/1-556 Len: 739 Check: 8092 Weight: 1.00 Name: bmy_04287T0/1-459 Len: 739 Check: 389 Weight: 1.00 Name: ENSTTRP00000006858/1-670 Len: 739 Check: 6942 Weight: 1.00 // 1 50 ENSBTAP00000008834/1-732 MDNRKDPPFF NEDNVGPLYC RLPFYDTMEL FIETLTGTCF ELRVSPFEAI BACU006353/1-556 ---------- ---------- ---------- ---------- ---------- bmy_04287T0/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006858/1-670 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000008834/1-732 ISVKAKIQRL EGIPICQQHL IWNNMELEDD YCLNYYNISD GCTLKLVLAM BACU006353/1-556 ---------- ---------- ---------- ---------- ---------- bmy_04287T0/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006858/1-670 ---------- --IPICQQHL IWNNMELEDD YCLNDYNISE GCTLKLVLAM 101 150 ENSBTAP00000008834/1-732 RGGPINTSRV PLEDPLKDMA EYMDSSRDEV WEKTSCNKQV TLLVYQEGDQ BACU006353/1-556 ---------V PMEDPLREMN EYMDSSRDEV WEKTSCNKQV TFLVYREGDQ bmy_04287T0/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006858/1-670 RGGPINTRRV PMEDPLREMA EYMDSSRDEV WEKTSCNKQV TFLVYREGDQ 151 200 ENSBTAP00000008834/1-732 LNFFRVVDRG DGTLTPLSES LSQKIEYQVH FNSNYHFLCS SGSVYSLYAD BACU006353/1-556 LNFFRVVDRG DGTLTPLSES LS-------- ---------- GGSVYNLHTD bmy_04287T0/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006858/1-670 LNFFRVVDRG DGTLTPLSES LRIGFHLHVS LRKGEHCMI- GGSVYNLHTD 201 250 ENSBTAP00000008834/1-732 EDEEIEPSPS GQQIIENSIT MNKMKLLKAK MENMNLSKKP KKAVKVKPRP BACU006353/1-556 EDEEIEPSPS GQQIIENSIT MNKMKLLKAK MENMNLSKKP KKAVKVKPRP bmy_04287T0/1-459 ---------- ---------- ---------- ---------P KKAVKVKPRP ENSTTRP00000006858/1-670 EDEEIEPSPS GQQIIENSIT MNKMKLLKAK MENMNLSKKP KKPVKVKPRP 251 300 ENSBTAP00000008834/1-732 PVAPRPCSGS TAPARHRVLR ALPHIGQSCL PSPGSTRLPD LASSAVSSLA BACU006353/1-556 PVVPRPSSSS TAAARHRLLR VLPHIGQSCL PSPGNTYLPD SASNAISSLA bmy_04287T0/1-459 PVVPRPSSSS TAAARHRLLR VLPHIGQSCL PSPGNTYLPD SASNAISSLA ENSTTRP00000006858/1-670 PVVPRPSSSS TGAARHRLLR VLPHIGQSCL PSSGNTYLPD SASNAISSLP 301 350 ENSBTAP00000008834/1-732 ALPAADRPVS SITSDLLKEG ENWESYALSH SSSGFRLPSQ MPHMEFETDK BACU006353/1-556 ALPPADRSIS SIASDFLKED DNWESNTQSH SNSGFKLPPQ IPAMEFENDK bmy_04287T0/1-459 ALPPADRSIS SIASDFLKED DNWESNTQSH SNSGFKLPPQ IPPMEFENDR ENSTTRP00000006858/1-670 ALPPADISIS SIASDFIKED NNWESNTQSH SNSGFKLPPQ IPPMEFENDK 351 400 ENSBTAP00000008834/1-732 ELADAVLHLG SSLPRRTKHF PGSLSS-NED DAVLFPTSEE CVTEESLPPE BACU006353/1-556 ELADSILHLG SSLPRRTKNF SGNLSSNNED DTVLFPTSEE CVTEELLLPE bmy_04287T0/1-459 ELADSILHLG SSLPRRTKNF SGNLSSNNED DTVLFPTSEE CVTEESLLPE ENSTTRP00000006858/1-670 ELADSVLHLG SSLPRQTKNF SGNLPSNNED DTVLFPTSEE CVTEESLLPE 401 450 ENSBTAP00000008834/1-732 VGSSASITEG NAGEQSSGVG GMRKVNPEPC LINGDKGSKA KEQHLKHAAK BACU006353/1-556 VGSFASFTEG NADEQSSGLE GTRKVNPESS LTNGDKGLKA TEQHLKYVAK bmy_04287T0/1-459 VGSFASFTEG NADEQSSGLZ GTRKVNPESS LTNGDKGLKA TEQHLKHVAK ENSTTRP00000006858/1-670 VGSFASFTEG NADEKSSGLE GTQKVNPEFS LTNGDKGLKA TEQHLKHVAR 451 500 ENSBTAP00000008834/1-732 VWNGESVEAS VLSRRELSPH KNRLLSPLRC SAPTSLHNSL AKPQRQSKCF BACU006353/1-556 VLSGESVEAA VFDHRELSAH KNRLLSPLHC SAPMSLHHSL VKPQRQSKCF bmy_04287T0/1-459 VLSGESVEAA VLDHRELSAH KNRLLSPLHC SAPMSLHNSL VKPQRQSKCF ENSTTRP00000006858/1-670 VLSGESVETA VLDHRELSPH ENRLLSPLHC SAPMSLHNSL VKPQRQSKCF 501 550 ENSBTAP00000008834/1-732 ESGSLQSSAS QNLLRSLDVR NTCDSSFSRT TRFRAVKVDS TGKRSDIISK BACU006353/1-556 ESGNLQSSAS QNVLRSLDIR NITDSSFSRT TRFRAVKVDS PGKRSDIISK bmy_04287T0/1-459 ESGNLQSSAS QNVLRSLDVR NITDSSFSRT TRFRAVKVDS PGKRSDIISK ENSTTRP00000006858/1-670 ESGNLQSSAS QNVLRSLDIR NITDSSFSRT TCFRAVKVDS PGKRSDIISK 551 600 ENSBTAP00000008834/1-732 VEARDITEMA NRASKEPVGF VNNIGFLASL ARSASRDSLQ SARGAGRLRA BACU006353/1-556 VEARDITEMA NKATKEPVGC VNNIGFLASL ARSASRDSLQ STRGAGRLRT bmy_04287T0/1-459 VEARDITEMA NKATKEPVGW VNNIGFLASL ARSASRDSLQ STRGAGRLRT ENSTTRP00000006858/1-670 VEARDITEMA NKASKEPVGC VNNIGFLASL AQSASRDSLQ STHGAGRLRT 601 650 ENSBTAP00000008834/1-732 SGVGLSANLQ HFQEESLRRS SPQLETTEFF LSARGFGMNG NNTTSGKRV- BACU006353/1-556 SGIGLFTNLQ HFQEESLRKS SPQLEPTEFF LSARGIGMNG NNTAAGKRVA bmy_04287T0/1-459 SGIGLFTNLQ HFQEESLRKS SPQLEPTEFI LSARGIGMNG NNTAAGKRVG ENSTTRP00000006858/1-670 SGIGLFTNLQ HFQEESLRKS SPQLEPTEFF LSARGIGMNG NNTAAGKRV- 651 700 ENSBTAP00000008834/1-732 -----GECSH HLPPVKAPIQ TKKKTTKHCF LCGKKTGLAT SYECRCGNNF BACU006353/1-556 L----GKEVF SIFLFKFNII MPDR------ -------IPS PFQNK--NDT bmy_04287T0/1-459 VLSPTGECTH HLPPVKAPIQ TKKKTTKHCF LCGKKTGLAT SYECR----- ENSTTRP00000006858/1-670 -----GECAH HLPPVKAPIQ TKKKTTKHCF LCGKKTGLAT SYECRCGNNF 701 750 ENSBTAP00000008834/1-732 CASHRYAETH SCTYDYKSAG RRYLQEANPV VNAPKLPKI BACU006353/1-556 CG-------- ---------- ---------- --------- bmy_04287T0/1-459 ---------- -------QVG ---------- --------- ENSTTRP00000006858/1-670 CASHRYAETH SCTYDYKSAG RRYLQEANPV VNAPKLPKI