KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:25 2014 Check: 00 .. Name: BACU014847/1-354 Len: 598 Check: 9678 Weight: 1.00 Name: bmy_05343T0/1-540 Len: 598 Check: 7723 Weight: 1.00 Name: ENSP00000381499/1-534 Len: 598 Check: 3569 Weight: 1.00 Name: ENSTTRP00000002289/1-422 Len: 598 Check: 1288 Weight: 1.00 Name: ENSBTAP00000008861/1-452 Len: 598 Check: 9146 Weight: 1.00 // 1 50 BACU014847/1-354 ---------- ---------- ---------- ---------- ---------- bmy_05343T0/1-540 MYTGKWRQGS QQWSCQALFR QGTCSDAPGC SSALAQRIRL AHWGDGSQPG ENSP00000381499/1-534 -MKFTLGLGS RAWRV----- ---------- ---------- ---------- ENSTTRP00000002289/1-422 -----LGLGS RAWRV----- ---------- ---------- ---------- ENSBTAP00000008861/1-452 -MKFTLGLGS RAWRV----- ---------- ---------- ---------- 51 100 BACU014847/1-354 --------MS QVDASEVAKG HGG------- ---------- ----LKRAA- bmy_05343T0/1-540 GTSVQPRAWV GGARRVAG-- -GDVPSRCVG SRERARRAEA RGSPLRGPCA ENSP00000381499/1-534 -------SWE GAAAAAAGPG AGGSALRCRA QRVSSPRLGR RGSRLSGAL- ENSTTRP00000002289/1-422 -------SWE RAAAAA---- -GGGALGSGS RRSSSPRPGR RGSRLARAL- ENSBTAP00000008861/1-452 -------SWE RAAAAA-GPG AGGGALGGGA RRSSSPRPGR RGSRLARAL- 101 150 BACU014847/1-354 ---------- -------PPS V--------- VPAR---VPT PGT-GP---- bmy_05343T0/1-540 RANSRDRTGS VCSDSEDPPV TFGGAPGAAP VPARPPSANP PVF-FPLPSL ENSP00000381499/1-534 ---------- -------PLC LSRGGGGAQA LPDC--AGPS PGHPGHPGAR ENSTTRP00000002289/1-422 ---------- -------PLC LSRGG-GAPA LPDR--AGPS P---GRLGAR ENSBTAP00000008861/1-452 ---------- -------PLC LFRGG-GAPA LPDR--AGPP PVF-SPLPSL 151 200 BACU014847/1-354 --------EQ TYGEVNQLGG VFVNGRPLPN AIRLRIVELA QLGIRPCDIS bmy_05343T0/1-540 SSGA--SAEQ TYGEVNQLGG VFVNGRPLPN AIRLRIVELA QLGIRPCDIS ENSP00000381499/1-534 QLAGPLAMEQ TYGEVNQLGG VFVNGRPLPN AIRLRIVELA QLGIRPCDIS ENSTTRP00000002289/1-422 QPAGPRAMEQ TYGEVNQLGG VFVNGRPLPN AIRLRIVELA QLGIRPCDIS ENSBTAP00000008861/1-452 WPGA--SAEQ TYGEVNQLGG VFVNGRPLPN AIRLRIVELA QLGIRPCDIS 201 250 BACU014847/1-354 RQLRVSHGCV SKILARYNET GSILPGAIGG SKPRVTTPNV VKHIRDYKQG bmy_05343T0/1-540 RQLRVSHGCV SKILARYNET GSILPGAIGG SKPRVTTPNV VKHIRDYKQG ENSP00000381499/1-534 RQLRVSHGCV SKILARYNET GSILPGAIGG SKPRVTTPNV VKHIRDYKQG ENSTTRP00000002289/1-422 RQLRVSHGCV SKILARYNET GSILPGAIGG SKPRVTTPNV VKHIRDYKQG ENSBTAP00000008861/1-452 RQLRVSHGCV SKILARYNET GSILPGAIGG SKPRVTTPNV VKHIRDYKQG 251 300 BACU014847/1-354 DPGIFAWEIR DRLLADGVCD KYNVPSVSSI SRILRNKIGS LAQPGPYEAS bmy_05343T0/1-540 DPGIFAWEIR DRLLADGVCD KYNVPSVSSI SRILRNKIGS LAQPGPYEAS ENSP00000381499/1-534 DPGIFAWEIR DRLLADGVCD KYNVPSVSSI SRILRNKIGS LAQPGPYEAS ENSTTRP00000002289/1-422 DPGIFAWEIR DRLLADGVCD KYNVPSVSSI SRILRNKIGS LAQPGPYEAS ENSBTAP00000008861/1-452 DPGIFAWEIR DRLLADGVCD KYNVPSVSSI SRILRNKIGS LAQPGPYEAS 301 350 BACU014847/1-354 KQPPPQPALP YNHIYQYPYP SPVSPTGAKM GSHHGVPGTA GHVSIPRSWP bmy_05343T0/1-540 KQPPPQPALP YNHIYQYPYP SPVSPTGAKM GSHHGVPGTA GHVSIPRSWP ENSP00000381499/1-534 KQPPSQPTLP YNHIYQYPYP SPVSPTGAKM GSHPGVPGTA GHVSIPRSWP ENSTTRP00000002289/1-422 KQPPPQPALP YNHIYQYPYP SPVSPTGAKM GSHHGVPGTA GHVSIPRSWP ENSBTAP00000008861/1-452 KQPPPQPALP YNHIYQYPYP SPVSSTGAKM GSHHGVPGTA SHVSIPRSWP 351 400 BACU014847/1-354 SAHSVSNILG IRTFMEQTGA LGGSEGAAYS PKMEDWAGVN RTAFPTSPAV bmy_05343T0/1-540 SAHSVSNILG IRTFMEQTGA LGGSEGAAYS PKMEDWAGVN RTAFPASPAV ENSP00000381499/1-534 SAHSVSNILG IRTFMEQTGA LAGSEGTAYS PKMEDWAGVN RTAFPATPAV ENSTTRP00000002289/1-422 SAHSVSNILG IRTFMEQTGA LGGSEGTAYS PKMEDWAGVN RTAFPASPAV ENSBTAP00000008861/1-452 SAHSVSNILG IRTFMEQTGA LAGSEGAAYS PKMEDWAGVN RAAFPASPAV 401 450 BACU014847/1-354 NGLEKPALEA DIKYTQKGLE GTLQGHLPVA CGAVPSVEDL LWHLNPAGN- bmy_05343T0/1-540 NGLEKPALEA DIKYTQSASG LPAVGGFLPA C-AYPASNQH GVYSSPAGGY ENSP00000381499/1-534 NGLEKPALEA DIKYTQSAST LSAVGGFLPA C-AYPASNQH GVYSAPGGGY ENSTTRP00000002289/1-422 NGLEKPALEA DIKYTQSASG LPAVGGFLPA C-AYPASNQH GVYSSPAGGY ENSBTAP00000008861/1-452 NGLEKPALDT DIKYTQSASG LSAVGGFLPA C-AYPASSQH GVYSSPAGGY 451 500 BACU014847/1-354 ------RPLA EKPP------ -----SPEMF SKQALTSKCV ---------- bmy_05343T0/1-540 LAPGPPWPPA QGPPLAPPGA GVTVHGGELA AAVTFKHPSR EGEGRGPAGG ENSP00000381499/1-534 LAPGPPWPPA QGPPLAPPGA GVAVHGGELA AAMTFKHPSR EGSLPAPAAR ENSTTRP00000002289/1-422 LAPGPPWPPA QGPPLAPPGA GVTVHGGELA AAVTFKHPSR EGSRPAPAV- ENSBTAP00000008861/1-452 LAPGPPWPPA QGPPLSPPGA SVTVHGGELA AAVTFKHPNR EVADRKPPSP 501 550 BACU014847/1-354 ---------- ---------- ---------- ---------- ---------- bmy_05343T0/1-540 VQTNAGGL-- ---------G SVQRSKGERQ RQRDREAGVG TGIDS----- ENSP00000381499/1-534 PRTPSVAYTD CPSRPRPPRG SSPRTRARRE RQADPGAQVC AAAPAIGTGR ENSTTRP00000002289/1-422 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008861/1-452 GGKAPDGL-- ---------G SLH------- ---------G LPIPA----- 551 600 BACU014847/1-354 ---------- ---------- ---------- -----YWVE- -------- bmy_05343T0/1-540 ---------- ---------- ---------- -----FSGLH FKPEKINF ENSP00000381499/1-534 IGGLAEEEAS AGPRGARPAS PQAQPCLWPD PPHFLYWSGF LGFSELGF ENSTTRP00000002289/1-422 ---------- ---------- ---------- ---------- -------- ENSBTAP00000008861/1-452 ---------- ---------- ---------- -----STS-- --------