KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:27 2014 Check: 00 .. Name: ENSP00000368314/1-1304 Len: 1339 Check: 119 Weight: 1.00 Name: ENSBTAP00000008864/1-1308 Len: 1339 Check: 3703 Weight: 1.00 Name: BACU012630/1-779 Len: 1339 Check: 252 Weight: 1.00 Name: ENSTTRP00000003848/1-1215 Len: 1339 Check: 4672 Weight: 1.00 Name: bmy_17238T0/1-870 Len: 1339 Check: 6477 Weight: 1.00 // 1 50 ENSP00000368314/1-1304 MQLKI-MPKK KRLSAGRVPL ILFLCQMISA LEVPLDPKLL EDLVQPPTIT ENSBTAP00000008864/1-1308 MQLKI-MPKK KRLSAGRAPL MLFLCQMISA LEVPLDQAIL QELVQPPTIT BACU012630/1-779 ---------- ---------- ---------- ---------- ------PTIT ENSTTRP00000003848/1-1215 MQLKIMMPKK KHLSASRAPL ILFLCQMISA LEVPLDQKSA EVMVQPPTIT bmy_17238T0/1-870 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000368314/1-1304 QQSPKDYIID PRENIVIQCE AKGKPPPSFS WTRNGTHFDI DKDPLVTMKP ENSBTAP00000008864/1-1308 QQSPKDYIID PRENIVIQCE AKGKPSPSFS WTRNGTHFDI DKDPLVTMKP BACU012630/1-779 QQSPKDYIID PRENIVIQCE AKGKPPPSFS WTRNGTHFDI DKDPLVTMKS ENSTTRP00000003848/1-1215 QQSPKDYIID PRENIVIQCE AKGKPPPSFS WTRNGTHFDI DKDPLVTMKS bmy_17238T0/1-870 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000368314/1-1304 GTGTLIINIM SEGKAETYEG VYQCTARNER GAAVSNNIVV RPSRSPLWTK ENSBTAP00000008864/1-1308 GSGTLTINIM SEGKAETYEG VYQCTARNER GAAISNNIVI RPSRSPLWTK BACU012630/1-779 GSGTLTVNIM SEGKAETYEG VYQCTARNER GAAISNNIVI RPS------- ENSTTRP00000003848/1-1215 GSGTLTVNIM SEGKAETYEG VYQCTARNER GAAISNNIVI RPSRSPLWTK bmy_17238T0/1-870 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000368314/1-1304 EKLEPITLQS GQSLVLPCRP PIGLPPPIIF WMDNSFQRLP QSERVSQGLN ENSBTAP00000008864/1-1308 EKLEPIILRN GQSLVLPCRP PIGLPPPIIF WMDNSFQRLP QSERVSQGLN BACU012630/1-779 ---------- ---------- ---------- ----TFQRLP QSERVSQGLN ENSTTRP00000003848/1-1215 EKLERITLRN GQSLVLPCRP PVGLPPPIIF WMDNSFQRLP QSERVSQGLN bmy_17238T0/1-870 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000368314/1-1304 GDLYFSNVLP EDTREDYICY ARFNHTQTIQ QKQPISVKVI SVDELNDTIA ENSBTAP00000008864/1-1308 GDLYFSNVLP EDTREDYICY ARFNHTQTIQ QKQPISVKVI SVDELNDTIA BACU012630/1-779 GDLYFSNVLP EDTREDYICY ARFNHTQTIQ QKQPISVKVI SVDELNDTIA ENSTTRP00000003848/1-1215 GDLYFSNVLP EDTREDYICY ARFNHTQTIQ QKQPISVKVI SVDELNDTIA bmy_17238T0/1-870 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000368314/1-1304 ANLSDTEFYG AKSSRERPPT FLTPEGNASN KEELRGNVLS LECIAEGLPT ENSBTAP00000008864/1-1308 ANLSDTEFYG AKSHRQRPPT FLTPDGNTSR KEELRGNVLS LECIAEGLPT BACU012630/1-779 ANLSDTEFYG AKSHRERPPT FLTPEGNASR KEELRGNVLS LECIAEGLPT ENSTTRP00000003848/1-1215 ANLSDTEFYG AKSHRERPPT FLTPEGNASR KEELRGNVLS LECIAEGLPT bmy_17238T0/1-870 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000368314/1-1304 PIIYWAKEDG MLPKNRTVYK NFEKTLQIIH VSEADSGNYQ CIAKNALGAI ENSBTAP00000008864/1-1308 PIIYWIKEDG TLPINRTFYR NFKKTLQIVQ VTEADSGNYQ CIAKNALGAI BACU012630/1-779 PIIYWIKEDG TLPINRTFYR NFKKTLQIVQ VTEADSGNYQ CIAKNALGAI ENSTTRP00000003848/1-1215 PIIYWIKEDG TLPINRTFYR NFKKTLQIVQ VTEADSGNYQ CIAKNALGAI bmy_17238T0/1-870 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000368314/1-1304 HHTISVRVKA APYWITAPQN LVLSPGEDGT LICRANGNPK PRISWLTNGV ENSBTAP00000008864/1-1308 HHTISVTVKA APYWIIAPQN LVLSPEEDGT LICRANGNPK PRISWLSNGV BACU012630/1-779 HHIISVTVKA SPYWIIAPQN LVLSPGEDGT LICRANGNPK PRISWLLNGV ENSTTRP00000003848/1-1215 HHIISVTVKA APYWIIAPQN LVLSPGEDGT LTCRANGNPK PRISWLLNGV bmy_17238T0/1-870 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000368314/1-1304 PIEIAPDDPS RKIDGDTIIF SNVQERSSAV YQCNASNEYG YLLANAFVNV ENSBTAP00000008864/1-1308 PIEIAPDDPS RKIDGDTIIF SKVQERSSAV YQCNASNEYG YLLANAFVNV BACU012630/1-779 LIEIAPDDPS RKIDGDTIIF SNVQERSSAV YQCNASNEYG YLLANAFVNV ENSTTRP00000003848/1-1215 PIEIAPDDPS RKIDGDTIIF SNVQERSSAV YQCNASNEYG YLLANAFVNV bmy_17238T0/1-870 ----APDDPS RKIDGDTIIF SNVQERSSAV YQCNASNEYG YLLANAFVNV 451 500 ENSP00000368314/1-1304 L--------- ------AEPP RILTPANTLY QVIANRPALL DCAFFGSPLP ENSBTAP00000008864/1-1308 L--------- ------AEPP RILTSANTLY QVIANRPALL DCAFFGSPLP BACU012630/1-779 LETDKLNDNF MILIFETEPP RIFTSADTLY QVIANRPALL DCAFFGSPLP ENSTTRP00000003848/1-1215 L--------- ------AEPP RILTSADTLY QVIANRPALL DCAFFGSPLP bmy_17238T0/1-870 L--------- ------AEPP RIFTSADTLY QVIANRPALL DCAFFGSPLP 501 550 ENSP00000368314/1-1304 TIEWFKGAKG SALHEDIYVL HENGTLEIPV AQKDSTGTYT CVARNKLGMA ENSBTAP00000008864/1-1308 TIEWFKGAKG SALREDIYVL HENGTLEIPV AQKDSTGTYT CVARNKLGMA BACU012630/1-779 TIEWFKGAKG SALREDIYVL HENGTLEIPV AQKDSTGTYT CVARNKLGMA ENSTTRP00000003848/1-1215 TIEWFKGAKG SALREDIYVL HENGTLEIPV AQKDSTGTYT CVARNKL--- bmy_17238T0/1-870 TIEWFKGAKG SALXEDIYVL HENGTLEIPV AQKDSTGTYT CVARNKLGMA 551 600 ENSP00000368314/1-1304 KNEVHLEIKD PTWIVKQPEY AVVQRGSMVS FECKVKHDHT LSLTVLWLKD ENSBTAP00000008864/1-1308 KNDVHLEIKD PTRIIKQPEY AVVQRGSTVS FECKVKHDHT LIPTVMWLKD BACU012630/1-779 KNDIHLEIKD PTRIIKQPEY AVVQRGSTVS FECIVKHDHT LIPTVTWLKD ENSTTRP00000003848/1-1215 ---------E PTRIIKQPEY AVVQRGSTVS FECIVKHDHT LIPTVMWLKD bmy_17238T0/1-870 KNDIHLEI-- ---------- ----KGSTVS FECIVKHDHT LIPTVTWLKD 601 650 ENSP00000368314/1-1304 NRELPSDERF TVDKDHLVVA DVSDDDSGTY TCVANTTLDS VSASAVLSVV ENSBTAP00000008864/1-1308 HGELPNDGRF TVDKDRLVVA DVNDDDGGTY TCVANTTLDN VSASAVLSVV BACU012630/1-779 HGELPSDGRF TVDKDHLVVA DVSDDDGGTY TCVANTTLDS VSASAVLSVV ENSTTRP00000003848/1-1215 HRELPSDGRF TVDKDHLVVA DVNDDDGGTY TCVANTTLDN VSASAVLRVV bmy_17238T0/1-870 HGELPSDGRF TVDKDHLVVA DVSDDDGGTY TCVANTTLDS VSASAVLSVV 651 700 ENSP00000368314/1-1304 APTPTPAPVY DVPNPPFDLE LTDQLDKSVQ LSWTPGDDNN SPITKFIIEY ENSBTAP00000008864/1-1308 APTPTPAPIY DVPNPPFDLE LTDQLDRSVQ LSWTPGDDNN SPITKFIIEY BACU012630/1-779 ---------- DVPNPPFDLE LTDQLDRSVQ LSWTPGDDNN SPITKFIIEY ENSTTRP00000003848/1-1215 APTPTPAPIY DVPNPPFDLE LTDQLDRSVQ LSWTPGDDNN SPISKFIIEY bmy_17238T0/1-870 APTPTPAPIY DVPSPPFDLE LTDQLDRSVQ LSWTPGDDNN SPITKFIIEY 701 750 ENSP00000368314/1-1304 EDAMHKPGLW HHQTEVSGTQ TTAQLKLSPY VNYSFRVMAV NSIGKSLPSE ENSBTAP00000008864/1-1308 EDAMHEPGLW HHQTEVPGTQ TTAQLKLSPY VNYSFRVMAE NNLGRSLPSE BACU012630/1-779 EDAMHEPGLW HHQTEVPGAQ TTAQLKLSPY VNYSFRVMAV NSLGRSLPSE ENSTTRP00000003848/1-1215 EDAMHEPGLW HHQTEVPGAQ TTAQLKLSPY VNYSFRVMAV NSLGRSLPSE bmy_17238T0/1-870 EDAMHEPGLW HHQTEVPGAQ TTAQLKLSPY VNYSFRVMAV NSLGRSLPSE 751 800 ENSP00000368314/1-1304 ASEQYLTKAS EPDKNPTAVE GLGSEPDNLV ITWKPLNGFE SNGPGLQYKV ENSBTAP00000008864/1-1308 ASEQYLTKAA EPDKNPTAVE GLGSEPDNLV ITWKPLNGFE SNGPGLQYKV BACU012630/1-779 ASEQYLTKAA EPDKNPTAVE GLGSEPDNLV ITWKPLNGFE SNGPGLQYKV ENSTTRP00000003848/1-1215 ASEQYLTKAA EPDKNPTAVE GLGSEPDNLV ITWKPLNGFE SNGPGLQYKV bmy_17238T0/1-870 ASEQYLTKAA EPDKNPTAVE GLGSEPDNLV ITWKPLNGFE SNGPGLQYKV 801 850 ENSP00000368314/1-1304 SWRQKDGDDE WTSVVVANVS KYIVSGTPTF VPYLIKVQAL NDMGFAPEPA ENSBTAP00000008864/1-1308 SWRQKDGDDE WTSVVVANVS KYIVSGTPTF VPYLIKVQAL NDAGFAPEPA BACU012630/1-779 SWRQKDGDDE WTSMVVADVS KYIVSGTPTF VPYLIKVQAL NDAGFAPEPA ENSTTRP00000003848/1-1215 SWRQKDGDDE WTSMVVADVS KYIVSGTPTF VPYLIKVQAL NDAGFAPEPA bmy_17238T0/1-870 SWRQKDGDDE WTSMVVADVS KYIVSGTPTF VPYLIKVQAL NDAGFAPEPA 851 900 ENSP00000368314/1-1304 VVMGHSGEDL PMVAPGNVRV NVVNSTLAEV HWDPVPLKSI RGHLQGYRIY ENSBTAP00000008864/1-1308 AVMGHSGEDL PMVAPGNVRV NVVNSTLAEV HWDPVPLKSI RGHLQGYRIY BACU012630/1-779 VVLGHSGED- ---------- ---------- ---------- ---------- ENSTTRP00000003848/1-1215 VVLGHSGEDL PMVAPGNVHV NVVNSTLAEV HWDPVPLKSI RGHLQGYRIY bmy_17238T0/1-870 VVLGHSGEDL PMVAPGNVHV NVVNSTLAEV HWDP------ --------IY 901 950 ENSP00000368314/1-1304 YWKTQSSSKR NRRHIEKKIL TFQGSKTHGM LPGLEPFSHY TLNVRVVNGK ENSBTAP00000008864/1-1308 YWKAQSSLTR NRRHIEKKIL TFQGSKTHGM LPGLEPFSHY TLNVRVVNGK BACU012630/1-779 ---------- ---HL----- ---------- ---------- ---------- ENSTTRP00000003848/1-1215 YWKAQSSSTR NRRHIEKKIL TFQGSKTHGM LPGLEPFSHY TLNVRVVNGK bmy_17238T0/1-870 YWKAQSSSTR NRRHIEKKIL TFQGSKTHGM LPGLEPFSHY TLNVRVVNGK 951 1000 ENSP00000368314/1-1304 GEGPASPDRV FNTPEG--VP SAPSSLKIVN PTLDSLTLEW DPPSHPNGIL ENSBTAP00000008864/1-1308 GEGPASPDKV FNTPEGVKVP SAPSSLKIVN PTLDSLTLEW EPPSHPNGIL BACU012630/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003848/1-1215 GEGPASPDRV FNTPEG--VP SAPSSLKIVN PTLDSLTLEW EPPSHPNGVL bmy_17238T0/1-870 GEGPASPDRV FNTPEG--VP SAPSSLKIVN PTLDSLTLEW EPPSHPNGIL 1001 1050 ENSP00000368314/1-1304 TEYTLKYQPI N--------- ---STHELGP LVDLKIPANK TRWTLKNLNF ENSBTAP00000008864/1-1308 TEYTLKYQPI N--------- ---STHELGP LVDLKIPANK TRWILKNLNF BACU012630/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003848/1-1215 TEYTLKYQPS N--------- ---------- ---------- ---------- bmy_17238T0/1-870 TEYTLKYQPS KLWGEGNREI WFTKEKDCYL NIQTGYFFTA TRWTLKNLNF 1051 1100 ENSP00000368314/1-1304 STRYKFYFYA QTSAGSGSQI TEEAVTTVDE --AGILPPDV GAGKVQAVNP ENSBTAP00000008864/1-1308 STRYKFYFYA QTAAGSGIQI TEEAITTVDE GKAGILPPDV GAGKEKAVYP BACU012630/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003848/1-1215 ---------- ---------- ---------- --TGILPPDV GAGKC----- bmy_17238T0/1-870 STRYKFYFYA QTAAGSGSQI TEEAITTVDE --AGILPPDV GAGK--AVNP 1101 1150 ENSP00000368314/1-1304 RISNLTAAAA ETYANISWEY EGPEHVNFYV EYGVAGSKEE WRKEIVNGSR ENSBTAP00000008864/1-1308 GISKLTTAAA ETSANISWEY EGPELVNFYV EYGVAGSKEE WRREIVNGSR BACU012630/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003848/1-1215 ---------- --------EY EGPEHVNVSV EYGVAGSKEE WRKETVNGSR bmy_17238T0/1-870 RISKLTTATA ETSANISWEY EGPEHVNFYV EYGVAGSKEE WRKET----- 1151 1200 ENSP00000368314/1-1304 SFFGLKGLMP GTAYKVRVGA VGDSGFVSSE DVFETGPAMA SRQVDIATQG ENSBTAP00000008864/1-1308 SFFGLKGLMP GTAYKVRVGA EGDSGFVSSE DVFETGPAMA SRQVDIATQG BACU012630/1-779 -------LLE GTEF------ ---------- ---------- ---------- ENSTTRP00000003848/1-1215 GFFGL-GLMP GTAYQIQVGA DGDSGFVDSE GMFETGPAMA SRQVDIATQG bmy_17238T0/1-870 ------GLMP GTAYKIRVGA EGDSGFVGSE GMFETGPAMA SRQVDIATQG 1201 1250 ENSP00000368314/1-1304 WFIGLMCAVA LLILILLIVC FIRRNKGGKY PVKEKEDAHA DPEIQPMKED ENSBTAP00000008864/1-1308 WFIGLMCAVA LLILILLIVC FIRRNKGGKY PVKEKEDAHA DPEIQPMKED BACU012630/1-779 ---------- ---------- ---------- -INKKQTPH- ---------- ENSTTRP00000003848/1-1215 WFIGLMCAVA LLILILLIVC FIRRNKGGKY PVKEKEDAHA DPEIQPMKED bmy_17238T0/1-870 WFIGLMCAVA LLILILLIVC FIRRNKGGKY PVKEKEDAHA DPEIQPMKED 1251 1300 ENSP00000368314/1-1304 DGTFGEYS-- -DAEDHKPLK KGSRTPSDRT VKKEDSDDSL VDYGEGVNGQ ENSBTAP00000008864/1-1308 DGTFGEYS-- -DAEDHKPLK KGSRTPSDRT VKKEDSDDSL VDYGEGVNGQ BACU012630/1-779 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003848/1-1215 DGTFGEYSLK NDAEDHKPLK KGSRTPSDRT VKKEDSDDSL VDYGEGVNGQ bmy_17238T0/1-870 DGTFGEYS-- -DAEDHKPLK KGSRTPSDRT VKKEDSDDSL VDYGEGVNGQ 1301 1350 ENSP00000368314/1-1304 FNEDGSFIGQ YSGKKEKEPA EGNESSEAPS PVNAMNSFV ENSBTAP00000008864/1-1308 FNEDGSFIGQ YSGKKEKEPA EGNESSEAPS PVNAMNSFV BACU012630/1-779 ---------- ---------- ---------- --------- ENSTTRP00000003848/1-1215 FNEDGSFIGQ YSGKKEKEPA EGNESSEAPS PVNAMNSFV bmy_17238T0/1-870 FNEDGSFIGQ YSGKKEKEPA EGNESSEAPS PVNAMNSFV