KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:30 2014 Check: 00 .. Name: ENSP00000382628/1-897 Len: 961 Check: 4433 Weight: 1.00 Name: ENSBTAP00000008875/1-757 Len: 961 Check: 8397 Weight: 1.00 Name: ENSTTRP00000009315/1-846 Len: 961 Check: 4974 Weight: 1.00 Name: bmy_05190T0/1-873 Len: 961 Check: 2567 Weight: 1.00 Name: BACU017863/1-918 Len: 961 Check: 9863 Weight: 1.00 // 1 50 ENSP00000382628/1-897 MNISGSSCGS PNSADTSSDF KDLWTKLKEC HDREVQGLQV KVTKLKQERI ENSBTAP00000008875/1-757 MNLSGSSCGS PSSADVSNDF KDLWTKLKEY HDKETQGLQV KVTKLKKERI ENSTTRP00000009315/1-846 ---------- ---------- ---------- ---------- -------ERI bmy_05190T0/1-873 MNVSGSSCGS PSSADVSNDF KDLWTKLKEY HDKEVQGLQV KVTKLKKERI BACU017863/1-918 MNVSGSSCGS PSSTDVSNDF KDLWTKLKEY HDKEVQGLQV KVTKLKKERI 51 100 ENSP00000382628/1-897 LDAQRLEEFF TKNQQLREQQ KVLHETIKVL EDRLRAGLCD RCAVTEEHMR ENSBTAP00000008875/1-757 LDAQRLEEFF TKNQQLREQQ KVLHETIKVL EDRLRAGLCD RCAVTEEHMR ENSTTRP00000009315/1-846 LDAQRLEEFF TKNQQLREQQ KVLHETIKVL EDRLRAGLCD RCAVTEEHMR bmy_05190T0/1-873 LDAQRLEEFF TKNQQLREQQ KVLHETIKVL EDRISE---- ---------Q BACU017863/1-918 LDAQRLEEFF TKNQQLREQQ KVLHETIKVL EDRLRAGLCD RCAVTEEHMR 101 150 ENSP00000382628/1-897 KKQQEFENIR QQNLKLITEL MNERNTLQEE NKKLSEQLQQ KIENDQQHQA ENSBTAP00000008875/1-757 KKQQEFENIR QQNLKLITEL MNEKNTLQEE NKKLSEQLQQ KIENDQPHKA ENSTTRP00000009315/1-846 KKQE-FENIR QQNLKLITEL MNEKNTLQEE NKKLSEQLQQ KIXXXXXXXX bmy_05190T0/1-873 SRVDSFSQL- --------SL FSSR------ ---------- ---NDQPHQA BACU017863/1-918 KKQQEFENIR QQNLKLITEL MNEKNTLQEE NKKLFEQLQQ KIENDQPHQA 151 200 ENSP00000382628/1-897 AELECEEDVI PDSPITAFSF SGVNRLRRKE NPHVRYIEQT HTKLEHSVCA ENSBTAP00000008875/1-757 TDLESEEDVI PDSPITTFSF SGTNRLRRKE NLRVRYIEQT HAKLEHSGCA ENSTTRP00000009315/1-846 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05190T0/1-873 TDLETEEDVI PDSPITTFSF SGANRLRRKE NLHVRYVEQT HTKLEHSGCA BACU017863/1-918 TDLESEEDVI PDSPITTFSF SGANRLRRKE NLHVRYVEQT HTKLEHSGCA 201 250 ENSP00000382628/1-897 NEMRKVSKSS THPQHNPNEN EILVADTYDQ SQSPMAKAHG TSSYTPDKSS ENSBTAP00000008875/1-757 HELRTVPKSS AHPQHKPKES EILVADTCDQ SQAPVAKPHG KSSYTPD--- ENSTTRP00000009315/1-846 XXLRKIPKSS THPPHKHNER EILVADTCDQ SQAPVANTHG KSSYPPD--- bmy_05190T0/1-873 HELRKVPKSS THPQHKHNER EILVADTCDQ SQAPVANTHG KSSYPPD--- BACU017863/1-918 HELRKVPKSS THPQHKHNEP EILVADTYDQ SQAPVANTHG KSSYPPD--- 251 300 ENSP00000382628/1-897 FNLATVVAET LGLGVQEESE TQGPMSPLGD ELYHCLEGNH KKQPFEESTR ENSBTAP00000008875/1-757 -NLATVVAET LGLCVQEESE SRGPQSPLGD ELYHCLEGDH KKQAFEECRR ENSTTRP00000009315/1-846 -NLATVVAET LGLSVQDESE SRGPMSPVGD ELYHCLEGEH KK-PFEESRR bmy_05190T0/1-873 -NLATVVAET LGLSVQDESE KS------FT ALYF------ ---------- BACU017863/1-918 -NLATVVAET LGLSVQDESE SRGPMSPLGD ELYHCLEGDH KK-PFEESRR 301 350 ENSP00000382628/1-897 NTEDSLRFSD STSKTPPQEE LPTRVSSPVF GATSSIKSGL DLNTSLSPSL ENSBTAP00000008875/1-757 NSEDNLRFSD --SKTPFQEE LTTRVSSPVF GAPSNVKSSL GLNTSLSPSL ENSTTRP00000009315/1-846 NSEDSLTFSD SNSKPPPQEE LTTRVSSPVF GATSNVKSSL GLNTSLSPSL bmy_05190T0/1-873 -----FRFSD SNSKTPPQEE LTTRVSSPVF GATSNVKSSL GLNTSLSPSL BACU017863/1-918 NSEDRLRFSD SNSKTPPQEE LTTRVSSPVF GATSNVKSSL GLNTSLSPSL 351 400 ENSP00000382628/1-897 LQPGKKKHLK TLPFSNTCIS RLEKTRSKSE DSALFTHHSL GSEVNKIIIQ ENSBTAP00000008875/1-757 LETGKKTHLK TVPLSNTSAP GPEKPRSKSE DGTLITHHHL GTEVNKIPSQ ENSTTRP00000009315/1-846 LETGKKNHLK TMPFSNTSNS RSEKPRLKSE DGALFTHHNI GAEVKKITNQ bmy_05190T0/1-873 LETGKKNHLK TMPFSNTSNS RSENPRSKSE DGALFTHHNI GAEVKKITNQ BACU017863/1-918 LETGKKNHLK TMPFSNTSNS RSENPRSKSE DGALFTHHDI GAEVKKITNQ 401 450 ENSP00000382628/1-897 -SSNKQILIN KNISESLGEQ NRTEYGKD-- SNTDKHLEPL KSLGGRTSKR ENSBTAP00000008875/1-757 SSSNKQMLIN KNTSEPISEQ GNIGHSKD-- TDRDKHVVPL KSLGGRT-KR ENSTTRP00000009315/1-846 SSSNKQMLIN KNTS----EQ DSIDHIKDTV TDKDKHVVPL KSLGGRT-KR bmy_05190T0/1-873 SSSNKQMLIN KNTS----EQ DSIDHIKDTV TDKDKHVVPL KSLGGRT-KR BACU017863/1-918 SSSNKQVLIN KTTS----EQ DSIDHIKDTV TDKDKHVVPL KSLGGRT-KR 451 500 ENSP00000382628/1-897 KKTEEESEHE VSCPQASFDK ENAFPFPMDN QFSMNGDCVM DKPLDLSDRF ENSBTAP00000008875/1-757 KKIEEESEDE VICPQASFDK ENAFPFPLDS HSSMNGDYVM DKPLDLSDRF ENSTTRP00000009315/1-846 KKIEEESEDE VSCPQASFDK ENAFPFPPDS HSYMNGDYVM DKPLDLSDRF bmy_05190T0/1-873 KKIEEESEDE VSCPQASFDK ENAFPFPPDS HSYMNGDYVM DKPLDLSDRF BACU017863/1-918 KKIEEESEDE VSCPQASFDK ENAFPFPPDS HSYMNGDYVM DKPLDLSDRF 501 550 ENSP00000382628/1-897 SAIQRQEKSQ GSETSKNKFR QVTLYEALKT IPKGFSSSRK ASDGNCTLPK ENSBTAP00000008875/1-757 SAIQRQEKSQ GCENSKIRFR QVTLYEALKP IPRDSSSSRK ALSGSCGLTK ENSTTRP00000009315/1-846 SAIQRQEKSQ GSENSKIGFR QMTLSEVLKP VPKGSSSSHK ALSGSCGLTR bmy_05190T0/1-873 SAIQRQEKSQ GSENSKIGFR QVTLYEVLKP VPKGSSSSRK ALSGSCGLTK BACU017863/1-918 SAIQRQEKSQ GSENSKIGFR QVTLYEVLKP VPKGSSSSRK ALSGSCGLTK 551 600 ENSP00000382628/1-897 DSPGEPCSQE CIILQPLNKC SPDNKPSLQI KEENAVFKIP LRPRESLETE ENSBTAP00000008875/1-757 DSPEEPC-LQ ESLFQSLSK- SPDNKTLLQI KEENPVFKIP LRPRESFETE ENSTTRP00000009315/1-846 DSPEEPSSLQ ESLLQSLNK- SPDNKTLLQI KEENSIFKIP LHPRESLETE bmy_05190T0/1-873 DSPEEPSSLQ ESLLQSVSK- SPDNKTLLQI KEENSIFKIP LRPRESLETE BACU017863/1-918 DSPEEPSSLQ ESL-QSLSK- SPDNKTLLQI KEENSIFKIP LRPRESLETE 601 650 ENSP00000382628/1-897 NVLDDIKSAG SHEPIKIQTR SDHGGCELAS VLQLNPCRTG KIKSLQNNQD ENSBTAP00000008875/1-757 NLFDDTKGAG SHEPIKIKTR SVRGACEVAS VLQLNPCRIA KTKSLQNNQD ENSTTRP00000009315/1-846 NLFDDMKGAG SCEPIKVKTR SVHGACELAS VLQLNPCRIA KTKSLQNNQD bmy_05190T0/1-873 NLFDDMKGAG SREPIKVKTR SVHGACELAS VLQLNPCRIA KTKSLQNNQD BACU017863/1-918 NLFDDMKGAG SREPIKVKTR SVHGACELAS VLQLNPCRIA KTKSLQNNQD 651 700 ENSP00000382628/1-897 VSFENIQWSI DPGADLSQYK MDVTVIDTKD GSQSKL-GGE TVDMDCTLVS ENSBTAP00000008875/1-757 VSFENIQWSI DPGADLSQYK MGVTVDDTKD GSQSRL-AGE TVDMDCTLVS ENSTTRP00000009315/1-846 VSFENIQWSI DPGADLSQYK MDITVVDTKD GSQSRLAGGE TVDMDCTLVS bmy_05190T0/1-873 VSFENIQWSI DPGADLSQYK MDITVVDTKD GSQSRLAGGE TVDMDCTLVS BACU017863/1-918 VSFENIQWSI DPGADLSQYK MDITVVDTKD GSQSRLAGGE TVDMDCTLVS 701 750 ENSP00000382628/1-897 ETVLLKMKKQ EQKGEKSSN- ---------- ---------- ---------- ENSBTAP00000008875/1-757 ETMLLKLKKQ EQKGEESPN- ---------- ---------- ---------- ENSTTRP00000009315/1-846 ETMLLKMKNQ EQKGEKSPT- ---------- ---------- ---------- bmy_05190T0/1-873 ETVLLKMKNQ EQKGEKSPSL GFTVASYTSE LFCGSSYKFH IGLHRKQKAC BACU017863/1-918 ETVLLKMKNQ EQKGEKSPT- ---------- ---------- ---------C 751 800 ENSP00000382628/1-897 ---------- -EERKMNDSL EDMFDRTTHE EYESCLADSF SQAADEEEEL ENSBTAP00000008875/1-757 ---------- -GERKMNDSL EDMFDRTTHE EYESCLAESF PQVADEEKEL ENSTTRP00000009315/1-846 ------LFHT DGERKLNDSL EDMFDRTTQE EYESCLVDSF PQVADEE-ES bmy_05190T0/1-873 LLPKPMLFHI DGERKMNDSL EDMFDRTTHE EYESCLVDSF PQVANEE-EL BACU017863/1-918 LLPKPMLFHI DGERKMNDSL EDMFDRTTHE EYESCLVDSF PQVADEE-ES 801 850 ENSP00000382628/1-897 STATKKLHTH GDKQDKVKQK AFVEPYFKGD ERETSLQNFP HIEVVRKKEE ENSBTAP00000008875/1-757 STTTKKPNIS ---------- ---------- ---------- ---------- ENSTTRP00000009315/1-846 STVTKKPNSP GDKQDKVKQK TFVEPYFKDD ERETSLQNFP HIEVVRKKEE bmy_05190T0/1-873 STATKKPNSP GDKKDKVKQK AFVEPYFKDD ERETSLQNFP HIEVVRKKEE BACU017863/1-918 STATKKPNSP GDKKDKVKQK AFVEPYFKDD ERETSLQNFP HIEVVRKKEE 851 900 ENSP00000382628/1-897 RRKLLGHTCK ECEI------ ---YYADMPA EEREKKLASC SRHRFRYIPP ENSBTAP00000008875/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009315/1-846 RRKLLGHTCK ECEI------ ---YYADLPA EEREKKLASC SRHRFRYIPP bmy_05190T0/1-873 RRKLLGHTCK ECEIWKTHQF YYQYYADFPA EEREKKLASC SRHRFRYIPP BACU017863/1-918 RRKLLGHTCK ECEIWKTHQF YYQYYADFPA EEREKKLASC SRHRFRYIPP 901 950 ENSP00000382628/1-897 NTPENFWEVG FPSTQTCMER GYIKEDLDPC PRPKRRQPYN AIFSPKGKEQ ENSBTAP00000008875/1-757 ------W--- ---------- ---------- ---------- ---------- ENSTTRP00000009315/1-846 NTPENFWEVG FPSTQTCVER GYIKEDLDPC PRPKRRQPYN AIFSPKGKEQ bmy_05190T0/1-873 NTPENFWEVG FPSTQTCMER GYIKEDLDPC PRPKRRQPYN AIFSPKGKEQ BACU017863/1-918 NTPENFWEVG FPSTQTCMER GYIKEDLDPC PRPKRRQPYN AIFSPKGKEQ 951 1000 ENSP00000382628/1-897 KT-------- - ENSBTAP00000008875/1-757 ---------- - ENSTTRP00000009315/1-846 KT-------- - bmy_05190T0/1-873 KI-------- - BACU017863/1-918 KIQMLKQKQE R