KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:32 2014 Check: 00 .. Name: bmy_10221T0/1-1313 Len: 1408 Check: 6547 Weight: 1.00 Name: BACU003473/1-1276 Len: 1408 Check: 6918 Weight: 1.00 Name: ENSBTAP00000008880/1-1250 Len: 1408 Check: 1211 Weight: 1.00 Name: ENSP00000301873/1-1303 Len: 1408 Check: 8175 Weight: 1.00 Name: ENSTTRP00000002108/1-1301 Len: 1408 Check: 3261 Weight: 1.00 // 1 50 bmy_10221T0/1-1313 MPGPRGATGG LAPEMRGAGA AGLLA-LLLL LLLLLLGPGG GAEGGPAGER BACU003473/1-1276 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008880/1-1250 MPGPRGAAGG LAPEMRGAGA AGLLA----L LLLLLLGPGG GAEGGPAGER ENSP00000301873/1-1303 MPGPRGAAGG LAPEMRGAGA AGLLA-LLLL LLLLLLGLGG RVEGGPAGER ENSTTRP00000002108/1-1301 MPGPRGAAGG LAPEMRGAGA AGLLALLLLL LLLLLLGPGG GAEGGPAGER 51 100 bmy_10221T0/1-1313 GAGGGGALAR ERFKVVFAPV ICKRTCLKGQ CRDSCQQGSN MTLIGENGHS BACU003473/1-1276 ---------- ---------- ---------- ---------- MTLIGENGHS ENSBTAP00000008880/1-1250 GAGGGGALAR ERFKVVFAPV ICKRTCLKGQ CRDSCQKGSN MTLIGENGHS ENSP00000301873/1-1303 GAGGGGALAR ERFKVVFAPV ICKRTCLKGQ CRDSCQQGSN MTLIGENGHS ENSTTRP00000002108/1-1301 GAGGGGALAR ERFKVVFAPV ICKRTCLKGQ CRDSCQQGSN MTLIGENGHS 101 150 bmy_10221T0/1-1313 TDTLTGSGFR VVVCPLPCMN GGQCSSRNQC LCPPDFTGRF CQVPAGGTGG BACU003473/1-1276 TDTLTGSGFR VVVCPLPCMN GGQCSSRNQC LCPPDFTGRF CQVPAGGTGG ENSBTAP00000008880/1-1250 TDTLTGSGFR VVVCPLPCMN GGQCSSRNQC LCPPDFTGRF CQVPAGGAGG ENSP00000301873/1-1303 TDTLTGSGFR VVVCPLPCMN GGQCSSRNQC LCPPDFTGRF CQVPAGGAGG ENSTTRP00000002108/1-1301 TDTLTGSGFR VVVCPLPCMN GGQCSSRNQC LCPPDFTGRF CQVPAGGTGG 151 200 bmy_10221T0/1-1313 GTGGSGPGLG RAGALSTGAL PPLAPEGESV ASKHAIYAVQ VIADPPGPGE BACU003473/1-1276 GTGGSGPGLG RAGALSTGAL PPLAPEGESV ASKHAIYAVQ VIADPPGPGE ENSBTAP00000008880/1-1250 GAGGSGPGLG RAGALSTGAL PPLAPEGESV ASKHAMYAVQ VIADPPGPGE ENSP00000301873/1-1303 GTGGSGPGLS RTGALSTGAL PPLAPEGDSV ASKHAIYAVQ VIADPPGPGE ENSTTRP00000002108/1-1301 GTGGSGPGLG RAGALSTGAL PPLAQEGESV ASKHAIYAVQ VIADPPGPGE 201 250 bmy_10221T0/1-1313 GPPAQHAAFL VPLGPGQISA EVQAPPPVVN VRVHHPPEAS VQVHRIEGPN BACU003473/1-1276 GPPAQHAAFL VPLGPGQISA EVQAPPPVVN VRVHHPPEAS VQVHRIEGPN ENSBTAP00000008880/1-1250 GPPAQHATFL VPLGPGQISA EVQAPPPVVN VRVHHPAEAS VQVHRIEGPN ENSP00000301873/1-1303 GPPAQHAAFL VPLGPGQISA EVQAPPPVVN VRVHHPPEAS VQVHRIESSN ENSTTRP00000002108/1-1301 GPPAQHAAFL VPLGPGQISA EVQAPPPVVN VRVHHPPEAS VQVHRIEGPN 251 300 bmy_10221T0/1-1313 AEGPAPSQHL LPHPKPPHPR PPTQKPLGRC FQDTLPKQPC GSNPLPGLTK BACU003473/1-1276 AEGPAPSQHL LPHPKPPHPR PPTQKPLGRC FQDTLPKQPC GSNPLPGLTK ENSBTAP00000008880/1-1250 AEGPAPSQHL LPHPKPAHPR PPTQKPLGRC FQDTLPKQPC GSNPLPGLTK ENSP00000301873/1-1303 AESAAPSQHL LPHPKPSHPR PPTQKPLGRC FQDTLPKQPC GSNPLPGLTK ENSTTRP00000002108/1-1301 AEGPAPSQHL LPHPKPPHPR PPTQKPLGRC FQDTLPKQPC GSNPLPGLTK 301 350 bmy_10221T0/1-1313 QEDCCGSIGT AWGQSKCHKC PPLQYTGVQK PGPVRGEVGA DCPQGYKRLN BACU003473/1-1276 QEDCCGSIGT AWGQSKCHKC PQLQYTGVQK PGPVRGEVGA DCPQGYKRLN ENSBTAP00000008880/1-1250 QEDCCGSIGT AWGQSKCHKC PQLQYTGVQK PGPVRGEMGT DCPQGYKRLN ENSP00000301873/1-1303 QEDCCGSIGT AWGQSKCHKC PQLQYTGVQK PGPVRGEVGA DCPQGYKRLN ENSTTRP00000002108/1-1301 QEDCCGSIGT AWGQSKCHKC PQLQYTGVQK PGPVRGEVGT DCPQGYKRLN 351 400 bmy_10221T0/1-1313 STHCQDINEC AMPGVCRHGD CLNNPGSYRC VCPPGHSLGP SRTQCIADKP BACU003473/1-1276 STHCQDINEC AMPGMCRHGD CLNNPGSYRC VCPPGHSLGP SRTQCIADKP ENSBTAP00000008880/1-1250 STHCQDINEC AMPGMCRHGD CLNNPGSYRC VCPPGHSLGP SRTQCIADKP ENSP00000301873/1-1303 STHCQDINEC AMPGVCRHGD CLNNPGSYRC VCPPGHSLGP SRTQCIADKP ENSTTRP00000002108/1-1301 STHCQDINEC AMPGMCRHGD CLNNPGSYRC VCPPGHSLGP SRTQCIADKP 401 450 bmy_10221T0/1-1313 EEKSLCFRLV SPEHQCQHPL TTRLTRQLCC CSVGKAWGTR CQRCPADGTA BACU003473/1-1276 EEKSLCFRLV SPEHQCQHPL TTRLTRQLCC CSVGKAWGTR CQRCPADGTA ENSBTAP00000008880/1-1250 EEKSLCFRLV SPEHQCQHPL TTRLTRQLCC CSVGKAWGAR CQRCPADGTA ENSP00000301873/1-1303 EEKSLCFRLV SPEHQCQHPL TTRLTRQLCC CSVGKAWGAR CQRCPTDGTA ENSTTRP00000002108/1-1301 EEKSLCFRLV SPEHQCQHPL TTRLTRQLCC CSVGKAWGTR CQRCPADGTA 451 500 bmy_10221T0/1-1313 AFKEICPAGK GYHILTSHQT LTIQGESDFS LFLHPDGPPK PQQLPESPSR BACU003473/1-1276 AFKEICPAGK GYHILTSHQT LTIQGESDFS LFLHPDGPPK PQQLPESPSR ENSBTAP00000008880/1-1250 AFKEICPAGK GYHILTSHQT LTIQGESDFS LFLHPDGPPK PQQLPESPSR ENSP00000301873/1-1303 AFKEICPAGK GYHILTSHQT LTIQGESDFS LFLHPDGPPK PQQLPESPSQ ENSTTRP00000002108/1-1301 AFKEICPAGK GYHILTSHQT LTIQGESDFS LFLHPDGPPK PQQLPESPSR 501 550 bmy_10221T0/1-1313 APPPEDTEEE RGVSTDSPVI EEQSAQQSHP TVTTSPARPY PELISRPSPP BACU003473/1-1276 APPPEDTEEE RGVSTDSPVI EEQSAQQSHP TVTTSPARPY PELISRPSPP ENSBTAP00000008880/1-1250 APPPEDTEEE RGVSTDSPVI EEQSAQQSHP TVTVSPARPY PELISWPPPP ENSP00000301873/1-1303 APPPEDTEEE RGVTTDSPVS EERSVQQSHP TATTTPARPY PELISRPSPP ENSTTRP00000002108/1-1301 APPPEDTEEE RGVSTDSPVI EEQSSQQSHP TVTTSPARPY PELISRPSPP 551 600 bmy_10221T0/1-1313 ---WFLPDLP PSRSAVEIAP TQVTETDECR LNQNICGHGE CVPGPSDYSC BACU003473/1-1276 ---WFLPDLP PSRSAVEIAP TQVTETDECR LNQNICGHGE CVPGPSDYSC ENSBTAP00000008880/1-1250 ---QFLPDLP PSRSAVEIAP TQVTETDECR LNQNICGHGE CVPGPSDYSC ENSP00000301873/1-1303 TMRWFLPDLP PSRSAVEIAP TQVTETDECR LNQNICGHGE CVPGPPDYSC ENSTTRP00000002108/1-1301 ---WFLPDLP PSRSAVEIAP TQVTETDECR LNQNICGHGE CVPGPSDYSC 601 650 bmy_10221T0/1-1313 HCNPGYRSHP QHRYCVDVNE CEAEPCGAGR GICMNTGGSY NCHCNRGYRL BACU003473/1-1276 HCNPGYRSHP QHRYCVDVNE CEAEPCGAGR GICMNTGGSY NCHCNRGYRL ENSBTAP00000008880/1-1250 HCNPGYRSHP QHRYCVDVNE CEAEPCGAGR GICMNTGGSY NCHCNRGYRL ENSP00000301873/1-1303 HCNPGYRSHP QHRYCVDVNE CEAEPCGPGR GICMNTGGSY NCHCNRGYRL ENSTTRP00000002108/1-1301 HCNPGYRSHP QHRYCVDVNE CEAEPCGAGR GICMNTGGSY NCHCNRGYRL 651 700 bmy_10221T0/1-1313 HVGAGGRSCV DLNECAKPHL CGDGGFCINF PGHYKCNCYS GYRLKTSRPP BACU003473/1-1276 HVGAGGRSCV DLNECAKPHL CGDGGFCINF PGHYKCNCYS GYRLKTSRPP ENSBTAP00000008880/1-1250 HVGAGGRSCV DLNECAKPHL CGDGGFCINF PGHYKCNCYP GYRLKASRPP ENSP00000301873/1-1303 HVGAGGRSCV DLNECAKPHL CGDGGFCINF PGHYKCNCYP GYRLKASRPP ENSTTRP00000002108/1-1301 HVGAGGRSCV DLNECAKPHL CGDGGFCINF PGHYKCNCYS GYRLKTSRPP 701 750 bmy_10221T0/1-1313 VCEDIDECRD PSSCPDGKCE NKPGSFKCIA CLPGYRSQGG GACRDVNECA BACU003473/1-1276 VCEDIDECRD PSSCPDGKCE NKPGSFKCIA CLPGYRSQGG GACRDVNECA ENSBTAP00000008880/1-1250 VCEDIDECRD PSTCPDSKCE NKPGSFKCIA CLPGYRSQGG GACRDVNECA ENSP00000301873/1-1303 VCEDIDECRD PSSCPDGKCE NKPGSFKCIA CQPGYRSQGG GACRDVNECA ENSTTRP00000002108/1-1301 VCEDIDECRD PSSCPDGKCE NKPGSFKCIA CLPGYRSQGG GACRDVNECA 751 800 bmy_10221T0/1-1313 EGSPCSPGWC ENLPGSFRCT CAQGYAPAPD GRSCLDVDEC EAGDVCDNGI BACU003473/1-1276 EGSPCSPGWC ENLPGSFRCT CAQGYAPAPD GRSCLDVDEC EAGDVCDNGI ENSBTAP00000008880/1-1250 EGNPCSPGWC ENLPGSFRCT CAQGYAPAQD GRSCLDVDEC EAGDVCDNGI ENSP00000301873/1-1303 EGSPCSPGWC ENLPGSFRCT CAQGYAPAPD GRSCLDVDEC EAGDVCDNGI ENSTTRP00000002108/1-1301 EGSPCSPGWC ENLPGSFRCT CAQGYAPAPD GRSCLDVDEC EAGDVCDNGI 801 850 bmy_10221T0/1-1313 CTNTPGSFQC QCLSGYHLSR DRSHCEDIDE CDFPAACIGG DCINTNGSYR BACU003473/1-1276 CTNTPGSFQC QCLSGYHLSR DWSHCEDIDE CDFPAACIGG DCINTNGSYR ENSBTAP00000008880/1-1250 CANTPGSFQC QCLSGYHLSR DRSRCEDINE CDFPAACIGG DCINTNGSYR ENSP00000301873/1-1303 CSNTPGSFQC QCLSGYHLSR DRSHCEDIDE CDFPAACIGG DCINTNGSYR ENSTTRP00000002108/1-1301 CTNTPGSFQC QCLSGYHLSR DRSHCEDIDE CDFPAACIGG DCINTNGSYR 851 900 bmy_10221T0/1-1313 CLCPQGHRLV GGRKCQDIDE CSQDPGLCLP HGACENLQGS YVCVCDEGFT BACU003473/1-1276 CLCPQGHRLV GGRKCQDIDE CSQDPGLCLP HGACENLQGS YVCVCDEGFT ENSBTAP00000008880/1-1250 CLCPQGHRLV GGRKCQDIDE CSQDPGLCLP HGACENLQGS YVCICDEGFT ENSP00000301873/1-1303 CLCPQGHRLV GGRKCQDIDE CSQDPSLCLP HGACKNLQGS YVCVCDEGFT ENSTTRP00000002108/1-1301 CLCPQGHRLV CGRKCQDIDE CSQDPGLCLP HGACENLQGS YICVCDEGFM 901 950 bmy_10221T0/1-1313 PTQDQHGCEE VEQPHHKKEC YLNFDDTVFC DSVLATNVTQ QD-------- BACU003473/1-1276 PTQDQHGCEE VEQPHHKKEC YLNFDDTVXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008880/1-1250 PTQDQHGCEE VEQPHHKKEC YLNFDDTVFC DSVLATNVTQ QECCC----- ENSP00000301873/1-1303 PTQDQHGCEE VEQPHHKKEC YLNFDDTVFC DSVLATNVTQ QECCC----- ENSTTRP00000002108/1-1301 PTQDQHGCEE VEQPHHKKEC YLNFDDTVFC DSVLATNVTQ QECCC----- 951 1000 bmy_10221T0/1-1313 ---------- ---------- ---------- ---------- ---------- BACU003473/1-1276 XTARSIPAQS TAQVRSRAGP FLFQSLSFFI WKRTGGESPS LGR-WEVRRE ENSBTAP00000008880/1-1250 ---------- ---------- ---------- ---------S LGAGWGDHCE ENSP00000301873/1-1303 ---------- ---------- ---------- ---------S LGAGWGDHCE ENSTTRP00000002108/1-1301 ---------- ---------- ---------- ---------S LGAGWGDHCE 1001 1050 bmy_10221T0/1-1313 ---------- ---------- ---------- -LCPDGKGYT QDNNIVNYGI BACU003473/1-1276 LRPAATASTH ALNPASFLPH GHYLAVAEFH SLCPDGKGYT QDNNIVNYGI ENSBTAP00000008880/1-1250 IYPCPVYSS- ---------- ------AEFH SLCPDGKGYT QDNNIVNYGI ENSP00000301873/1-1303 IYPCPVYSS- ---------- ------AEFH SLCPDGKGYT QDNNIVNYGI ENSTTRP00000002108/1-1301 IYPCPVYSS- ---------- ------AEFH SLCPDGKGYT QDNNIVNYGI 1051 1100 bmy_10221T0/1-1313 PTHRDIDECI LFGAEICKEG KCVNTQPGYE CYCKQGFYYD GNLLECVDVD BACU003473/1-1276 PTHRDIDECI LFGAEICKEG KCVNTQPGYE CYCKQGFYYD GNLLECVDVD ENSBTAP00000008880/1-1250 PAHRDIDECI LFGAEICKEG KCVNTQPGYE CYCQHGFYYD SNLLECVDVD ENSP00000301873/1-1303 PAHRDIDECM LFGSEICKEG KCVNTQPGYE CYCKQGFYYD GNLLECVDVD ENSTTRP00000002108/1-1301 PTHRDIDECI LFGAEICKEG KCVNTQPGYE CYCKQGFYYD GNLLECVDVD 1101 1150 bmy_10221T0/1-1313 ECLDESNCRN GVCENTRGGY RCACTPPAEY SPAQRQCLSP EEMDVDECQD BACU003473/1-1276 ECLDESNCRN GVCENTRGGY RCACTPPAEY SPAQRQCLSP EEMDVDECQD ENSBTAP00000008880/1-1250 ECLDESNCRN GVCENTRGGY RCACTPPAEY SPVQRQCLSP EEM------- ENSP00000301873/1-1303 ECLDESNCRN GVCENTRGGY RCACTPPAEY SPAQRQCLSP EEMDVDECQD ENSTTRP00000002108/1-1301 ECLDESNCRN GVCENTRGGY RCACTPPAEY SPAQRQCLSP EEMDVDECQD 1151 1200 bmy_10221T0/1-1313 PAACRPGRCV NLPGSYRCEC RPPWVPGPSG RDCQLPESPA GEGKGHLGLS BACU003473/1-1276 PAACRPGRCV NLPGSYRCEC RPPWVPGPSG RDCQLPESPA GP-------- ENSBTAP00000008880/1-1250 ---------- ---------- ---------- ---------- ---------- ENSP00000301873/1-1303 PAACRPGRCV NLPGSYRCEC RPPWVPGPSG RDCQLPESPA ---------- ENSTTRP00000002108/1-1301 PAACRPGRCV NLPGSYRCEC RPPWVPGPSG RDCQLPESPA ---------- 1201 1250 bmy_10221T0/1-1313 RALSAAWRPG AAVPPR--VG WSGEGRSSLT PGPPPQSVPR SGGTCAGASA BACU003473/1-1276 -------RSS ERAPERRDVC WSQRGEDGMC AGPLAGPALT FDDCCCRQGR ENSBTAP00000008880/1-1250 ---------- ERAPERRDVC WGQRGDDGMC AGPLAGPALT FDDCCCRQGR ENSP00000301873/1-1303 ---------- ERAPERRDVC WSQRGEDGMC AGPLAGPALT FDDCCCRQGR ENSTTRP00000002108/1-1301 ---------- ERAPERRDVC WSQRGEDGMC AGPLAGPALT FDDCCCRQGR 1251 1300 bmy_10221T0/1-1313 ERTACVRAPW PGPPSPSTTA AVARAEVGEP SAARARRAAP CPTSQSESNS BACU003473/1-1276 GWGAQCR--- PCPPRGA--- ---------- -------GSQ CPTSQSESNS ENSBTAP00000008880/1-1250 GWGAQCR--- PCPPRGA--- ---------- -------GSQ CPTSQSESNS ENSP00000301873/1-1303 GWGAQCR--- PCPPRGA--- ---------- -------GSH CPTSQSESNS ENSTTRP00000002108/1-1301 GWGAQCR--- PCPPRGA--- ---------- -------GSH CPTSQSESNS 1301 1350 bmy_10221T0/1-1313 FWDASPLLLG KPPREEDSSE EDSDECRCVS GRCVPRPGGA VCECPGGFQL BACU003473/1-1276 FWDASPLLLG KPPREEDSSE EDSDECRCVS GRCVPRPGGA VCECPGGFQL ENSBTAP00000008880/1-1250 FWDTSPLLLG KPAREEDSSE EDSDECRCVS GRCVPRPGGA VCECPGGFQL ENSP00000301873/1-1303 FWDTSPLLLG KPPRDEDSSE EDSDECRCVS GRCVPRPGGA VCECPGGFQL ENSTTRP00000002108/1-1301 FWDASPLLLG KPPREEDSSE EDSDECRCVS GRCVPRPGGA VCECPGGFQL 1351 1400 bmy_10221T0/1-1313 DASRARCIDI DECRELNQRG LLCKSERCVN TSGSFRCVCK AGFARSRPHG BACU003473/1-1276 DASRARCVDI DECRELNQRG LLCKSERCVN TSGSFRCVCK AGFARSRPHG ENSBTAP00000008880/1-1250 DASRARCVDI DECRELNQRG LLCKTERCVN TSGSYRCVCK AGFARSRTHG ENSP00000301873/1-1303 DASRARCVDI DECRELNQRG LLCKSERCVN TSGSFRCVCK AGFARSRPHG ENSTTRP00000002108/1-1301 DASRARCVDI DECRELNQRG LLCKSERCVN TSGSFRCVCK AGFARSRPHG 1401 1450 bmy_10221T0/1-1313 ACVPQRRR BACU003473/1-1276 ACVPQRRR ENSBTAP00000008880/1-1250 ACVPQRRR ENSP00000301873/1-1303 ACVPQRRR ENSTTRP00000002108/1-1301 ACVPQRRR