KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:34 2014 Check: 00 .. Name: ENSP00000312671/1-1523 Len: 1660 Check: 5008 Weight: 1.00 Name: ENSBTAP00000008891/1-1451 Len: 1660 Check: 9978 Weight: 1.00 Name: ENSTTRP00000002129/1-1372 Len: 1660 Check: 8315 Weight: 1.00 Name: bmy_10223T0/1-1498 Len: 1660 Check: 6770 Weight: 1.00 Name: BACU003477/1-1068 Len: 1660 Check: 3286 Weight: 1.00 // 1 50 ENSP00000312671/1-1523 MTSVWKRLQR VGKRAAKFQF VACYHELVLE CTKKWQPDKL VVVWTRRNRR ENSBTAP00000008891/1-1451 MTSVWKRLQR VGKRAAKFQF VACYHELVVE CTKKWQPDKL VVVWTRRNRR ENSTTRP00000002129/1-1372 MTSVWNRLHR VGMRARQFQF VAWYHELVVD CTKKWQPDKL VVVWTRRNRR bmy_10223T0/1-1498 MTSVWKRLQR VGKRAAKFQF VACYHELVVE CTKKWQPDKL VVVWTRRNRR BACU003477/1-1068 MTSVWKRLQR VGKRAAKFQF VACYHELVVE CTKKWQPDKL VVVWTRRNRR 51 100 ENSP00000312671/1-1523 ICSKAHSWQP GIQNPYRGTV VWMVPENVDI SVTLYRDPHV DQYEAKEWTF ENSBTAP00000008891/1-1451 ICSKAHSWQP GIQNPYRGTV VWMVPENVDI SVTLYRDPHV DQYEAKEWTF ENSTTRP00000002129/1-1372 ICSKAHSWQP GIQNPYRGTV LWMVPENVDI SVTLYRDPHV DQYEAKEWTF bmy_10223T0/1-1498 ICSKAHSWQP GIQNPYRGTV VWMVPENVDI SVTLYRDPHV DQYEAKEWTF BACU003477/1-1068 ICSKAHSWQP GIQNPYRGTV VWMVPENVDI SVTLYRDPHV DQYEAKEWTF 101 150 ENSP00000312671/1-1523 IIENESKGQR KVLATAEVDL ARHAGPVPVQ VPVRLRLKPK SVKVVQAELS ENSBTAP00000008891/1-1451 IIENESKGQR KVLATAEVDL ARHAGPVPTQ VPLRLRLKPK SVKVVQAELS ENSTTRP00000002129/1-1372 VIENESKGQR KVLATAEVDL ARHAGPVPAQ ASLRLRLKPK SVKVVQAELS bmy_10223T0/1-1498 VIENESKGQR KVLATAEVDL ARHAGPVPAQ APLRLRLKPK SVKVVQAELS BACU003477/1-1068 VIENESKGQR KVLATAEVDL ARHAGPVPAQ APLRLRLKPK SVKVVQAELS 151 200 ENSP00000312671/1-1523 LTLSGVLLRE GRATDDDMQS LASLMSVKPS DVGNLDDFAE SDEDEAHGPG ENSBTAP00000008891/1-1451 LTLSGVLLRE GRATDDDMQS LASLMSMKPS DVGNLDDFAE SDEEEANGPG ENSTTRP00000002129/1-1372 LTLSGVLLRE GRATDDDMQS LASLMSMKPS DVGNLEDFAE SDEEDANGPG bmy_10223T0/1-1498 LTLSGVLLRE GRATDDDMQS LASLMSMKPS DVGNLEDFAE SDEEEANGPG BACU003477/1-1068 LTLSGVLLRE GRATDDDMQS LASLMSMKPC DVGNLEDFAE SDEEEANGPG 201 250 ENSP00000312671/1-1523 APEARARVPQ P--------- ---------- ---------- ---------- ENSBTAP00000008891/1-1451 ALEARTRVPQ P--------- ---------- ---------- ---------- ENSTTRP00000002129/1-1372 GLDARVRVLQ P--------- ---------- ---------- ---------- bmy_10223T0/1-1498 GPEARARVLQ P--------- ---------- ---------- ---------- BACU003477/1-1068 GPEARARVLQ PVQARHPSLP NLVPPFCLLR LFFPSVLSLF SSAPVGLSLL 251 300 ENSP00000312671/1-1523 ---------- ---DPSRELK TLCEEEEEGQ GRPQQA---- ---------- ENSBTAP00000008891/1-1451 ---------- ---ETPRELK TLCEEEEEGR LQPRQA---- ---------- ENSTTRP00000002129/1-1372 ---------- ---DTSRELK TLCEEEEEGR FRPRQA---- ---------- bmy_10223T0/1-1498 -GPGSSLRLG RFPDTSRELK TLCEEEEEGR SRPRQAGEAQ AGVGTVGTGP BACU003477/1-1068 VGPGSSLRLG RFPDTSRELK TLCEEEEEGR SRPRQA---- ---------- 301 350 ENSP00000312671/1-1523 ---------- -----VASPS NAEDTSPAPV SAPAPPARTS RGQGSERANE ENSBTAP00000008891/1-1451 ---------- -----AASPS SAEDTSPAPV SAPAPPARAS RGQGSEPATV ENSTTRP00000002129/1-1372 ---------- -----AASPS SAEDTSPAPV SAPAPPARAC RGQGSEPAPV bmy_10223T0/1-1498 PVTGPRPQHP PSFHPAASPS SAEDTSPAPV SAPAPPARAC RGQGSEPAPV BACU003477/1-1068 ---------- -----AASPS SAEDTSPAPV SAPAPPARAC RGQGSEPAPG 351 400 ENSP00000312671/1-1523 AGGQVGPEAP RPPETSPEMR SSRQPAQDTA PTPAPRLRKG SDALRPPVPQ ENSBTAP00000008891/1-1451 AGGQVGLKAS RPPGTLPETR PSRQPGQDMA PTPAPRLQKG SDAPWPPVHQ ENSTTRP00000002129/1-1372 AGGQVGPKAP RPPGTPPETR SSRQPGQDAA PSPAPRLWKG SDAPWPPVPQ bmy_10223T0/1-1498 AGGQVGPKAP RPPGTPPETR SSRQPGQDAA PSPAPRLRKG SDAPWPPVPQ BACU003477/1-1068 AGGQVGPKAP RPPGTPPETR SSRQPGQDAA PSPAPRLRKG SDAPWPPLPQ 401 450 ENSP00000312671/1-1523 GEDEVPKASG APPAGLGSAR ETQAQACPQE GTEAHGARLG PSIEDKGSGD ENSBTAP00000008891/1-1451 GEDEAPKASG APPAGVDSAV ETQARASPQE GTEAQGAGLG PGIENRDSSN ENSTTRP00000002129/1-1372 GGDEAPNASG APPTGVNSAV ETQAWASPQK GTEAQGTGLG PGIEDRDSSN bmy_10223T0/1-1498 GGDEAPSASG APPAGVNSAV ETQAWASPQK GTAAQGTGLG PGTEDRDSSN BACU003477/1-1068 GGDEAPSASG APPAGVNSAV ETQAWASPQK GTAAQGTGLG PGIEDRDSSN 451 500 ENSP00000312671/1-1523 PFGRQRLKAE EMDTEDRPEA SGVDTEPRSG GREANTKRSG VRAGEAEESS ENSBTAP00000008891/1-1451 SLEGQKPKVE EGGAGDRAEA SGVDTGHGPG VREVNSQRSV VRAGEAEESL ENSTTRP00000002129/1-1372 SLEGQKPKVE EGGIGDRPEA SGVDTEHGSG VREVNSKRSE VRAGEAEESL bmy_10223T0/1-1498 SLEGQKPKVE EGGTGDRPEA SGVDTEHGSG VREVNSRRSE VRAGEAEESL BACU003477/1-1068 SLEGQKPKVE EGGIGDRPEA SGVDTEHGSG VREVNSRRSE VRAGEAEESL 501 550 ENSP00000312671/1-1523 AVCQVDAEQR SKVRHVDTKG PEATGVMPEA RCRGTPEAPP RGSQGRLGVR ENSBTAP00000008891/1-1451 EIDHVDVEQR SKVKPVDTKG PEATEVTSEA RFKGTPEAPP RGSQGRTGVK ENSTTRP00000002129/1-1372 EVGQVDAEQR SKVRHVDTKG PEATGVTSEA RFKGTPEAPP RGSQGRTGVR bmy_10223T0/1-1498 EVGQVDAEQR SKVRHVDTKG PEATGVTSEA RFKGTPEAPP RGSQGRTGVR BACU003477/1-1068 EVGQVDAEQR SKVRHVDTKG PEATGVTSEA RFKGTPEAPP RGSQGRTGVR 551 600 ENSP00000312671/1-1523 TRDEAPSGLS LPPAEPAGHS GQLGDLEGAR AAAGQEREGA EVRGGAPGIE ENSBTAP00000008891/1-1451 TRDEAPTVLS PTPEEPVGHS GHLGDLKVAR AAAGQERECA EVRGGAPGVG ENSTTRP00000002129/1-1372 TREEAPTILS PPPAEPAGQS RHLSDLKGAR AAAGQEREGA EVRGGAPGVG bmy_10223T0/1-1498 TREEAPAILS PPPAEPAGQS RHLSDLKGAR AAAGQEREGA EVRGGAPGVG BACU003477/1-1068 TREEAPAILS PPPAEPAGQS RHLSDLKGAR AAAGQEREGA EVRGGAPGVG 601 650 ENSP00000312671/1-1523 GTGLEQGPSV GAISTRPQVS SWQGALLSTA QGAISRGLGG WEAEAGGSGD ENSBTAP00000008891/1-1451 GTGLEQGPSA GAPSAGPQVS WYEGAPPAAE QGVMSRDLRV WEVETGDSSV ENSTTRP00000002129/1-1372 GTGLEQGPSA GAASARPQVS QYQGAPPAAD QGVMSRDMRV QEVETGDLRD bmy_10223T0/1-1498 GTGLEQGPSA GAASARPQVS QYQGAPPAAD QGVMSRDMRV WEVETGDLRV BACU003477/1-1068 GTGLEQGPSA GAASARPQVS QYQGAPPAAD QGMMSRDMRV WEVETGDLRV 651 700 ENSP00000312671/1-1523 LETETEVVGL EVLGTQEKE- VEGSGFPE-- TRTLEIEILG ALEKEAARSR ENSBTAP00000008891/1-1451 LGTEPGVAES ELLGTQEIS- ----GSPEIV SEVAEAKTLG TQETEAVRSG ENSTTRP00000002129/1-1372 LGTETGVTES ELLGTQRTE- VGGSGFPEIE TETAEVEILG TQETEAVRSG bmy_10223T0/1-1498 LGTKTGVTES ELLGTRETEV VGGSGFPEIE TETAEVEILG TQETEAVRSG BACU003477/1-1068 LGAETGVTES ELLGTRETE- VGGSGFSEIE TETAEVQILG TQETEAVRSG 701 750 ENSP00000312671/1-1523 VLESEVAGTA QCEGLETQET EVGVIETPGT ET-----EVL GTQKTEAGGS ENSBTAP00000008891/1-1451 VLESEAAEMA ESEDLGTQKT GVSISGASGT EGGMAECKEL GTQETEAGGS ENSTTRP00000002129/1-1372 VLESEAAEMA ESEELGTQKT EVSVLGVPGA EAGMAECEVL GTQETEAVGT bmy_10223T0/1-1498 VLESEAAEMA ESEELGTQKT EVRVLEAPGA EAGMAECEVL GTQETEAVGT BACU003477/1-1068 VLESEAAEMA ESEELGTQKT E--------- ---------- ---------- 751 800 ENSP00000312671/1-1523 GVLQTRTTIA ETEVLVTQEI SGDLGPLKIE -DTIQSEMLG TQETEVEASR ENSBTAP00000008891/1-1451 GVLRTKTGML EIKMLGTQEI SGCSGILRRE AETAESEILG AQDTEVGC-- ENSTTRP00000002129/1-1372 GVLGTKTRIS EIEILGIQEI SGGSRVLKIE ADTAESEILG AQETEMGC-- bmy_10223T0/1-1498 GVLGTKTRMS EIEILGIQEI SGGSRVLKIE AEIAESEILG AQETEVGC-- BACU003477/1-1068 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000312671/1-1523 VPESEAEGTE AKILGTQEIT ARDSGVREIE AEIAESDILV AQEIEVGLLG ENSBTAP00000008891/1-1451 ---------- ---------- ---SGVSEIK SKITGS---- -QETEVGSSG ENSTTRP00000002129/1-1372 ---------- ---------- ---SGVSEIK FKITGM---- -QETELWGSE bmy_10223T0/1-1498 ---------- ---------- ---SGVSEIK SKITGM---- -QETELGGSE BACU003477/1-1068 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000312671/1-1523 VLGIETGAAE GAILGTQEIA SRDSGVPGLE ADTTGIQVKE VGGSEVPEIA ENSBTAP00000008891/1-1451 VPGTETEVAE AEI------- ---------- ---LGIQEIE AGG------- ENSTTRP00000002129/1-1372 VPGIETETAE AEILETQETE VGGSGAPGTE TETLGTQETE VGG------- bmy_10223T0/1-1498 VPGIETETAE AEILETQEMA AGGSRVPGME TETLGTQETE VGG------- BACU003477/1-1068 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000312671/1-1523 TGTAETEILG TQEIASRSSG VPGLESEVAG AQETEVGGSG ISGPEAGMAE ENSBTAP00000008891/1-1451 ---------- --------SG APEMEAETLR TQETEVGDSG FAGSEAGMAE ENSTTRP00000002129/1-1372 ---------- --------SG APGTETETLG TQETEVGGSG APGTETETLG bmy_10223T0/1-1498 ---------- --------SG APGTETETLG TQETEVEDSQ FSGPEARMAK BACU003477/1-1068 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000312671/1-1523 ARVLMTRKTE IIVPEAEKEE AQTSGVQEAE TRVGSALKYE ALRAPVTQPR ENSBTAP00000008891/1-1451 AEGLGNQQTE TTVLEAEKGK AQTSGVQEAE TGLGETLKYE ALGVPVVKHE ENSTTRP00000002129/1-1372 TQETEVEDSQ FSGPEARMAK AQTSGAQRAE TGLWETLRYE ALGAPVTKHG bmy_10223T0/1-1498 AQGLGTQQTE TTVLEAEKAK AKTSGVQKAE TGLWETLKYE ALGAPVIKHG BACU003477/1-1068 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000312671/1-1523 VLGSQEAKAE ISGVQGSETQ VLRVQEAEAG VWGMSEGKSG AWGAQEAEMK ENSBTAP00000008891/1-1451 VLESQGTEA- -------ETT VSRGQEADTG IWGVSEAKSG VWGAREAEME ENSTTRP00000002129/1-1372 ILGSQGAEA- -------ETT VLRGQEVEAG TLGVSEAMSG VWGAEEAETE bmy_10223T0/1-1498 ILGSQGAEA- -------ETT VLRGQEVEAG ILGVSEAMSG VWGAEEAEME BACU003477/1-1068 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000312671/1-1523 VLESPENKSG TFKAQEAEAG VLGNEKGKEA EGSLTEASLP EAQVASGAGA ENSBTAP00000008891/1-1451 VSGASENPSG IFEAQEAEAG VSGAEKGKEA EGNLPEASLM EVQVASGAGA ENSTTRP00000002129/1-1372 VSGASENQSG IFEAQEAEAG VSGTEKGKEA EGNLPEASLM EAQVASGAGA bmy_10223T0/1-1498 VSGASENQSG IFEAQEAEAG VSGTEKGKEA EGNLPEASLM EAQVASGAGA BACU003477/1-1068 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000312671/1-1523 GAPR---ASS PEKAEEDRRL PGSQAPPALV SSSQSLLEWC QEVTTGYRGV ENSBTAP00000008891/1-1451 GVSRPSGASS PEEPEEDRRL PGSQAPPAQV SFSQSLLEWC QEVTAGYRGV ENSTTRP00000002129/1-1372 GVPRPSGASS PEEPEEDRRL PGSQAPPAPV SFSQSLLEWC QEVTAGYRGV bmy_10223T0/1-1498 GVPRPSGASS PEEPEEDRRL PGSQALPAPV SFSQSLLEWC QEVTAGYRGV BACU003477/1-1068 ---------- ---------- ----ALPAPV SFSQSLLEWC QEVTAGYRGV 1151 1200 ENSP00000312671/1-1523 RITNFTTSWR NGLAFCAILH RFYPDKIDYA SLDPLNIKQN NKQAFDGFAA ENSBTAP00000008891/1-1451 RITNFTTSWR NGLAFCAILH RFYPDKIDFA SLDPLNIKQN NKQAFDGFAA ENSTTRP00000002129/1-1372 RITNFTTSWR NGLAFCAILH RFHPDKIDFA SLDPLNIKQN NKQAFDGFAA bmy_10223T0/1-1498 RITNFTTSWR NGLAFCAILH RFYPDKIDFA SLDPLNIKQN NKQAFDGFAA BACU003477/1-1068 RITNFTTSWR NGLAFCAILH RFYPDKIDFA SLDPLNIKQN NKQAFDGFAA 1201 1250 ENSP00000312671/1-1523 LGVSRLLEPA DMVLLSVPDK LIVMTYLCQI RAFCTGQELQ LVQLEGGGGA ENSBTAP00000008891/1-1451 LGVSRLLEPA DMVLLSVPDK LIVMTYLCQI RAFCTGQELQ LVQLEGGGGT ENSTTRP00000002129/1-1372 LGVSRLLEPA DMVLLSVPDK LIVMTYLCQI RAFCTGQELQ LVQLEGGGGA bmy_10223T0/1-1498 LGVSRLLEPA DMVLLSVPDK LIVMTYLCQI RAFCTGQELQ LVQLEGGGGA BACU003477/1-1068 LGVSRLLEPA DMVLLAVPDK LIVMTYLCQI RAFCTGQELQ LVQLEGGGGA 1251 1300 ENSP00000312671/1-1523 GTYRVGSAQP SPPDDLDAGG LAQRLRGHGA EGPQEPKEAA DRADGAAPGV ENSBTAP00000008891/1-1451 GTYRVASAQP SPPDDLDTGG LAQRLREHRA EAPQQPQEAA TRVDGAASEA ENSTTRP00000002129/1-1372 GTYRVASSQS SPPDELDTGG LAQRLREHWA ---QEPQEAA TRADGTAPEA bmy_10223T0/1-1498 GTYCVASAQS SPPDELDASG LAQRLREHRA EASQEPQEAA TRADGTAPEA BACU003477/1-1068 GTYRVASAQS IPPDELDASG LAQ------- ------ADSA SKLPGAG--- 1301 1350 ENSP00000312671/1-1523 ASRNAVA--- --GRASKDGG AEAPRESRPA EVPAEGLVNG AGAPG-GGGV ENSBTAP00000008891/1-1451 ASKDRGAVAA QEARSTE--A PADGPGARAS VPPAEGLVNG VGTPGAAGGV ENSTTRP00000002129/1-1372 ASKDRGAEAA SKDRASKDCG AEAAQEPRSV EAPAEGLVNG MEAPGAAGGV bmy_10223T0/1-1498 ASKDRGA--- ---------- ---------- ---------- ---------- BACU003477/1-1068 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000312671/1-1523 RLRRPSVNGE PGSVPPPRAH GSFSHVRDAD LLKKRRSRLR NSSSFSMDDP ENSBTAP00000008891/1-1451 RLRRPSVNAE AGPVPPPRAH GSFSHVRDAD LLKKRRSRLR NSSSFSGDEP ENSTTRP00000002129/1-1372 RLRRPSVNAE AGPVPPPRAH GSFSHVRDAD LLKKRRSRLR NSSSFSGDDP bmy_10223T0/1-1498 -----SVNAE AGPVPPPRAH GSFSHVRDAD LLKKRRSRLR NSSSFSGDDP BACU003477/1-1068 ---------- ---------- ----HVR--- ---------- ---------- 1401 1450 ENSP00000312671/1-1523 DAGAMGAA-- AAEGQAPDPS PAPGPPTAAD SQQPPGGSSP SEEPPPSPGE ENSBTAP00000008891/1-1451 DSGAAGAA-- AAEGTSPDPS PAPGLPAASA PQQPSGGTPP AEEPPPSPGE ENSTTRP00000002129/1-1372 DSGAAGAAGA AAEVVSPDPS PAP------- -QQAPGGSPP SEELPPSPAE bmy_10223T0/1-1498 DAGAAGAA-- -AEVVSPDPS PAP------- -QQAPGGTPP SEELPPSPAE BACU003477/1-1068 --GQRCPSGL KLEVVSPDPS PAP------- -QQAPGATPP SEELPPSPAE 1451 1500 ENSP00000312671/1-1523 EAGL------ ---------- ---------- ------QRFQ DTSQYVCAEL ENSBTAP00000008891/1-1451 DSGL------ ---------- ---------- ------QRFQ DTSQYVCAEL ENSTTRP00000002129/1-1372 EAGL------ ---------- ---------- ------QRFQ DTSQYVCAEL bmy_10223T0/1-1498 EAGLVRRAEV GGAMGGLPRQ GLGSAHPVPC PRFPPQQRFQ DTSQYVCAEL BACU003477/1-1068 EAGL------ ---------- ---------- ------QRFQ DTSQYVCAEL 1501 1550 ENSP00000312671/1-1523 QALEQEQRQI DGRAAEVEMQ LRSLMESGAN KLQEEVLIQE WFTLVNKKNA ENSBTAP00000008891/1-1451 QALEQEQRQI DGRAAEVEKQ LRSLMESGTD RLQEEVLIQE WFTLVNKKNA ENSTTRP00000002129/1-1372 QALEQEQRQI DGRAAEVETQ LRSLMESGAN RLQEEVLIQE WFTLVNKKNA bmy_10223T0/1-1498 QALEQEQRQI DGRAAEVETQ LRSLMESGAN RLQEEVLIQE WFTLVNKKNA BACU003477/1-1068 QALEQEQRQI DGRAAEVETQ LRSLMESGAN RLQEEVLIQE WFTLVNKKNA 1551 1600 ENSP00000312671/1-1523 LIRRQDQLQL LMEEQDLERR FELLSRELRA MLAIEDWQKT SAQQHREQLL ENSBTAP00000008891/1-1451 LIRRQDQLQL LIEEQDLERR FELLSRELRA MLAIEDWLKT AAQQRREQLL ENSTTRP00000002129/1-1372 LIRRQDQLQL ---------- ---------- ---------- ---------- bmy_10223T0/1-1498 LIRRQDQLQL LIEEQDLERR FELLSRELRA MLAIEDWLKT AAQQHREQLL BACU003477/1-1068 LIRRQDQLQL LIEEQDLERR FELLSRELRS MLAIEDWLKT AAQQHREQLL 1601 1650 ENSP00000312671/1-1523 LEELVSLVNQ RDELVRDLDH KERIALEEDE RLERGLEQRR RK----LSRQ ENSBTAP00000008891/1-1451 LEELVSLVNQ RDELVRNLDQ KERTALEEDE RLERGLEQRR RK----LSRQ ENSTTRP00000002129/1-1372 ---------- ---------- ---------- ---------- ---------- bmy_10223T0/1-1498 LEELVSLVNQ RDELVRNLDQ KERTALEEDE RLERGLEQRR RKLSRQLSRQ BACU003477/1-1068 LEELVSLVNQ RDELVRNLDQ KERTALEEDE RLERGLEQRR RK----LSRQ 1651 1700 ENSP00000312671/1-1523 LSRRERCVLS ENSBTAP00000008891/1-1451 LGRRERCVLS ENSTTRP00000002129/1-1372 ---------- bmy_10223T0/1-1498 LSRRELCVLS BACU003477/1-1068 LSRSERCVLT