KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:35 2014 Check: 00 .. Name: ENSP00000424497/1-729 Len: 732 Check: 5078 Weight: 1.00 Name: bmy_20325T0/1-404 Len: 732 Check: 9959 Weight: 1.00 Name: ENSBTAP00000008898/1-728 Len: 732 Check: 1904 Weight: 1.00 Name: ENSTTRP00000015843/1-727 Len: 732 Check: 4850 Weight: 1.00 Name: BACU015992/1-543 Len: 732 Check: 5590 Weight: 1.00 // 1 50 ENSP00000424497/1-729 MDDLTLLDLL ECPVCFEKLD VTAKVLPCQH TFCKPCLQRV FKAHKELRCP bmy_20325T0/1-404 ---------- ---------- ------MIEF SFSDNAFT-- ---------- ENSBTAP00000008898/1-728 MDDVTLLDLL ECPVCLEKLD VTAKVLPCQH TFCKPCLQRI FKAHKELRCP ENSTTRP00000015843/1-727 MDDVTLLDLL ECPVCLEKLD VTAKVLPCQH TFCKPCLQRI FKTHKELRCP BACU015992/1-543 MDDVTLLDLL ECPVCLEKLD VTAKVLPCQH TFCKPCLQRI FKTHKELRCP 51 100 ENSP00000424497/1-729 ECRTPVFSNI EALPANLLLV RLLDGVRSGQ SSGRGGSFRR PGTMTLQDGR bmy_20325T0/1-404 ---------- ---------- -----LRANQ STGR------ ---------- ENSBTAP00000008898/1-728 ECRTLVFCSI EALPANLLLV RLLDGVRAGQ SSGRGGSFRR PGVLTPQDGR ENSTTRP00000015843/1-727 ECRTLVFCSI EALPANLLLV RLLDGVRSGQ GSGGGGSLCR PGVLTSQGSR BACU015992/1-543 ECRTLVFCSI EALPANLLLM RLLDGVRSGQ GSGGGGSLRR PGVLTSQDSR 101 150 ENSP00000424497/1-729 KSRTNPRRLQ ASPFRLVPNV RIHMDGVPRA KALCNYRGQN PGDLRFNKGD bmy_20325T0/1-404 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008898/1-728 RSRTHPRGPQ CSPFRLVPNV RIHMDGVPRA KALCNYRGQN PGDLRFNKGD ENSTTRP00000015843/1-727 KSKTHPRGLQ CSPFQLVPNI RIHMDGVPRA KALCNYRGQN PGDLRFNKGD BACU015992/1-543 KSKTHPRGLQ CSPFRLVPNI RIHMDGVPRA KALCNYRGQN PGDLRFNKGD 151 200 ENSP00000424497/1-729 IILLRRQLDE NWYQGEINGI SGNFPASSVE VIKQLPQPPP LCRALYNFDL bmy_20325T0/1-404 ---------- ---------- ---------- ---RLPAHP- ---------- ENSBTAP00000008898/1-728 VILLRRQLDE NWYQGEINGV SGVFPASSVE VIKQLPQPPP LCRALYNFDL ENSTTRP00000015843/1-727 VILLRRQLDE NWYQGEINGV SGIFPASSVE VLKQLPQPPP LCRALYNFDL BACU015992/1-543 VILLQRQLDE NWYQGEINGV SGIFPASSVE VLKQLPQPPP LCRALYNFDL 201 250 ENSP00000424497/1-729 RGKDKSENQD CLTFLKDDII TVISRVDENW AEGKLGDKVG IFPILFVEPN bmy_20325T0/1-404 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008898/1-728 RDKDRSENQD CLTFLKDDII TVISRVDENW AEGKLGDKVG IFPILFVEPN ENSTTRP00000015843/1-727 RDKDKSKNQD CLTFLKDDII TVINRVDENW AEGKLGDKVG IFPILFVEPN BACU015992/1-543 RNKDKSENQD CLTFLKDDII TVISRVDENW AEGKLGDKVG IFPILFVEPN 251 300 ENSP00000424497/1-729 LTARHLLEKN KGRQSSRTKN LSLVSSSSRG ---NTSTLRR GPGSRRKVPG bmy_20325T0/1-404 ---------- ---------- -------EQG ---------- ---------- ENSBTAP00000008898/1-728 LTARHLLEKN KGRPSSRTKN LSLVSSPSRG KATSTPTLRR GPGSRRKGPG ENSTTRP00000015843/1-727 LTARHLLQKN KGRQSSHTKG MSLVSS-SRG KATNAPTLRR GPGSRRKGPG BACU015992/1-543 LTARHLLEKN KGRQSSRTKG MSLVSS-SRG KATNTPILRR GPGSRRKGPG 301 350 ENSP00000424497/1-729 QFSITTALNT LNRMVHSPSG RHMVEISTPV LISSSNPSVI TQPMEKADVP bmy_20325T0/1-404 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008898/1-728 QFSITTALNT LNRMVHSPSG RHMVEISTPV LISSSNPSVI TQHVEKADAS ENSTTRP00000015843/1-727 QFSIMTALNT LNRMVHSPSG HRMVEISTPV LISSSNPSVI TQHMEKADAP BACU015992/1-543 QFSIMTALNT LNRMVHSPSG RHMVAISTPV LVSSSNPSVI TQHMEKADAP 351 400 ENSP00000424497/1-729 SSCVGQVSTY HPAPVSPGHS TAVVSLPGSQ QHLSANMFVA LHSYSAHGPD bmy_20325T0/1-404 ----GFVSTY HPAPASPGHS TAIISLPGSQ QHLSANMFVA LHSYSAHGPD ENSBTAP00000008898/1-728 PSSVGQVSTY HPAPASPGHS TAIVSLPGSQ QHLSANMFVA LHSYSAHGPD ENSTTRP00000015843/1-727 PSSVGQVSTY HPAPASPGHS TAIISLPGSQ QHLSANMFVA LHSYSAHGPD BACU015992/1-543 PSSVGQVSTY HPAPASPGHS TAIISLPGSQ QHLSANMFVA LHSYSAHGPD 401 450 ENSP00000424497/1-729 ELDLQKGEGV RVLGKCQDGW LRGVSLVTGR VGIFPNNYVI PIFRKTSSFP bmy_20325T0/1-404 ELDLQKGEGI RVLGKYQDGW LRGVSLVTGR VGIFPNNYVI PIFRKTSSVP ENSBTAP00000008898/1-728 ELDLQKGEGV RVLGKYQDGW LRGVSLVTGR VGIFPNNYVI PIFRKTSSVP ENSTTRP00000015843/1-727 ELDLQKGEGI RVLGKYQDGW LRGVSLVTGR VGIFPNNYVI PIFRKTSSVP BACU015992/1-543 ELDLQKGEGI RVLGKYQDGW LRGVSLVTGR VGIFPNNYVI PIFRKTSSVP 451 500 ENSP00000424497/1-729 DSRSPGLYTT WTLSTSSVSS QGSISEGDPR QSRPFKSVFV PTAIVNPVRS bmy_20325T0/1-404 DSRSSALYTT WTLSTPSVSS QGSISEGDPR QSQPFKSVFV PTAIVNPVRN ENSBTAP00000008898/1-728 DSRSPGLYTA WTLSTSSVSS QGSISESDPR QSQPFKSVFV PTAIVNPVRS ENSTTRP00000015843/1-727 DSRSSALYAT WTLSTSSVSS QGSISEGDPR QSQPFKSVFV PTAIVNPVRN BACU015992/1-543 DSRSSALYAT WTLSTSSVSS QGSISDGDPR QSQPFKSVFV PTAIVNPVRN 501 550 ENSP00000424497/1-729 TAGPGTLGQG SLRKGRSSMR KNGSLQRPLQ SGIPTLVVGS LRRSPTMVLR bmy_20325T0/1-404 LAGLGTLGQG SLRKARSSMR KNGSLQRPVQ SGVPTLVVGS LRRSRTMVVR ENSBTAP00000008898/1-728 PASLGTLGQG SLRKGRGSMR KNGSLQRPVQ SGIPTLVVGS FRRSPTMVVQ ENSTTRP00000015843/1-727 LAGLRTLGQG SLRKRRSNMR KNGSLQRPVR SGVHTLVVGS LRRSPTMVVR BACU015992/1-543 LAGLGTLGQG SLRKARSSMR K--------- ---------- ---------- 551 600 ENSP00000424497/1-729 PQQFQFYQPQ GIPSSPSAVV VEMGSKPALT GEPALTCISR GSEAWIHSAA bmy_20325T0/1-404 PQQFQFYQPQ GAPSSASAVV AEMGPKPTAT GEPALTCVSR GSDTRIHSAA ENSBTAP00000008898/1-728 PQQFQFYQPQ GAPSSASTVV AELGPKPTST GEPAITCVSR GSDTRIHTAA ENSTTRP00000015843/1-727 PQQFQFYQPQ GAPSSPSAVV AEMGPKPTAT GEPALTCVSR GSDTRIHSAA BACU015992/1-543 ---------- ---TSQNREV SELQPSS--- ---------- ---------- 601 650 ENSP00000424497/1-729 SSLIMEDKEI PIKSEPLPKP PASAPPSILV KPENSRNGIE KQVKTVRFQN bmy_20325T0/1-404 SSLIMEGKEI PARSEPLPKL PASPPPSILV KPENSRNGSE KQVKTVRFQN ENSBTAP00000008898/1-728 SSLIMEGKEI PIKSEPLPKP PASAPPSILV KPENSRNGSE KQVKTVRFQN ENSTTRP00000015843/1-727 SSLIMEGKEI PVRSEPLPKL PASAPPSILV KPENSRNGSE KQVKTVRFQN BACU015992/1-543 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000424497/1-729 YSPPPTKHYT SHPTSGKPEQ PATLKASQPE AASLGPEMTV LFAHRSGCHS bmy_20325T0/1-404 YSPPPAKHH- ---TSGKPEQ AATPKGSQPE AAPLGPEMTV LFAHRSGCHS ENSBTAP00000008898/1-728 YSPPPAKHH- ---TSGKPEQ PATPKGSQPE AAPLGPEMTI LFAHRSGCHS ENSTTRP00000015843/1-727 YSPPPAKHH- ---TSGKPEQ PATPKGSQPE AAPLGPEMTV LFAHRSGCHS BACU015992/1-543 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000424497/1-729 GQQTDLRRKS ALGKATTLVS TASGTQTVFP SK bmy_20325T0/1-404 GQQTDLRRKS TFSKTMTPAP TASATQTVFP SK ENSBTAP00000008898/1-728 GQQTDLRRKS AFSKTVTPAS TASATQTAFP SK ENSTTRP00000015843/1-727 GQQTDLRRKS TFSKIMAPAP TASTTQTVFP SK BACU015992/1-543 ------RQTS HLWEA----- ---------- --