KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:36 2014 Check: 00 .. Name: ENSTTRP00000015845/1-1176 Len: 1176 Check: 493 Weight: 1.00 Name: ENSP00000377954/1-1176 Len: 1176 Check: 4909 Weight: 1.00 Name: ENSBTAP00000008902/1-1176 Len: 1176 Check: 3959 Weight: 1.00 Name: bmy_20419T0/1-1017 Len: 1176 Check: 4510 Weight: 1.00 Name: BACU015993/1-1176 Len: 1176 Check: 6645 Weight: 1.00 // 1 50 ENSTTRP00000015845/1-1176 MAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXKDKYFVTF ENSP00000377954/1-1176 MAERKGTAKV DFLKKIEKEI QQKWDTERVF EVNASNLEKQ TSKGKYFVTF ENSBTAP00000008902/1-1176 MAERKGTAKV DFLKKIEKEV QQKWDAKKVF EVNACNLEKQ TSKDKYFVTF bmy_20419T0/1-1017 MAERKRTTKV DFLKKIEKEV QQKWDAKKVF EVNASNLEKQ TSKDKYFVTF BACU015993/1-1176 MAERKRTTKV DFLKKIEKEV QQKWDAKKVF EVNASNLEKQ TSKDKYFVTF 51 100 ENSTTRP00000015845/1-1176 PYPYMNGRLH LGHTFSLSKC EFAVGYQRLK GKTCLFPFGL HCTGMPVKAC ENSP00000377954/1-1176 PYPYMNGRLH LGHTFSLSKC EFAVGYQRLK GKCCLFPFGL HCTGMPIKAC ENSBTAP00000008902/1-1176 PYPYMNGRLH LGHTFSLSKC EFAVGYQRLK GKTCLFPFGL HCTGMPIKAC bmy_20419T0/1-1017 PYPYMNGRLH LGHTFSLSKC EFAVGYQRLK GKTCLFPFGL HCTGMPV--- BACU015993/1-1176 PYPYMNGRLH LGHTFSLSKC EFAVGYQRLK GKTCLFPFGL HCTGMPVKAC 101 150 ENSTTRP00000015845/1-1176 ADKLKREIEL YGCPPDFPDE EEEEEEISIK TEDIIIKDKA KGKKSKAAAK ENSP00000377954/1-1176 ADKLKREIEL YGCPPDFPDE EEEEEETSVK TEDIIIKDKA KGKKSKAAAK ENSBTAP00000008902/1-1176 ADKLKREVEL YGCPPDFPDE EEEEEEINDK TENIIIKDKA KGKKSKAAAK bmy_20419T0/1-1017 ---------- ---------- ---------- ---------- ---KSKAAAK BACU015993/1-1176 ADKLKREIEL YGCPPDFPDE EEEEEEISIK TEDIIIKDKA KGKKSKAAAK 151 200 ENSTTRP00000015845/1-1176 AGSSKYQWDI MKSLGLSDEE IVKFSEAEYW LDYFPPLAVQ DLKRMGLKVD ENSP00000377954/1-1176 AGSSKYQWGI MKSLGLSDEE IVKFSEAEHW LDYFPPLAIQ DLKRMGLKVD ENSBTAP00000008902/1-1176 AGSSKYQWDI MKSLGLSDDE IVKFSEAEHW LEYFPPLAVQ DLKRMGLKVD bmy_20419T0/1-1017 AGSSKYQWDI MKSLGLSDEE IVKFSEAEYW LDYFPPLAVQ DLKRMGLK-- BACU015993/1-1176 AGSSKYQWDI MKSLGLSDEE IVKFSEAEYW LDYFPPLAVQ DLKRMGLKVD 201 250 ENSTTRP00000015845/1-1176 WRRSFITTDV NPYYDSFVRW QFLTLRERSK IKFGKRYTIY SPKDGQPCMD ENSP00000377954/1-1176 WRRSFITTDV NPYYDSFVRW QFLTLRERNK IKFGKRYTIY SPKDGQPCMD ENSBTAP00000008902/1-1176 WRRSFITTDV NPYYDSFVRW QFLTLRERSR IKFGKRYTIY SPKDGQPCMD bmy_20419T0/1-1017 ---------- ---------- ---------- ---------- ---------- BACU015993/1-1176 WRRSFITTDV NPYYDSFVRW QFLTLRERSK IKFGKRYTIY SPKDGQPCMD 251 300 ENSTTRP00000015845/1-1176 HDRQTGEGVG PQEYTLIKLK VLEPYPSKLS GLKGKNIFLV AATLRPETMF ENSP00000377954/1-1176 HDRQTGEGVG PQEYTLLKLK VLEPYPSKLS GLKGKNIFLV AATLRPETMF ENSBTAP00000008902/1-1176 HDRQTGEGVG PQEYTLIKLK VLEPYPSKLS GLKGKNIFLV AATLRPETMF bmy_20419T0/1-1017 -------GVG PQEYILIKLK VLEPYPSKLS GLKGKNIFLV AATLRPETMF BACU015993/1-1176 HDRQTGEGVG PQEYTLIKLK VLEPYPSKLS GLKGKNIFLV AATLRPETMF 301 350 ENSTTRP00000015845/1-1176 GQTNCWVCPH MKYIGFETVN GDIFICTQRA ARNMSYQGFT KDNGVVPVVK ENSP00000377954/1-1176 GQTNCWVRPD MKYIGFETVN GDIFICTQKA ARNMSYQGFT KDNGVVPVVK ENSBTAP00000008902/1-1176 GQTNCWVRPD MKYIGFETMN GDIFICTQRA ARNMSYQGFT KDNGVVPVVK bmy_20419T0/1-1017 GQTNCWVCPH MKYIGFETVN GDIFXCTQRA ARNMSYQGFT KDNGVVPVVK BACU015993/1-1176 GQTNCWVCPH MKYIGFETAN GDIFICTQRA ARNMSYQGFT KDNGVVPVVK 351 400 ENSTTRP00000015845/1-1176 ELMGEDILGA SLSAPLTSYK VIYVLPMLTI KEDKGTGVVT SVPSDSPDDF ENSP00000377954/1-1176 ELMGEEILGA SLSAPLTSYK VIYVLPMLTI KEDKGTGVVT SVPSDSPDDI ENSBTAP00000008902/1-1176 ELMGEDILGA SLSAPLTSYK VIYVLPMLTI KEDKGTGVVT SVPSDSPDDF bmy_20419T0/1-1017 ELMGEDILGA SLSAPLTSYK VIYVLPMLTI KEDKGTGVVT SVPSDSPDDF BACU015993/1-1176 ELMGEDILGA SLSAPLTSYK VIYVLPMLTI KEDKGTGVVT SVPSDSPDDF 401 450 ENSTTRP00000015845/1-1176 AAFRDLKKKQ ALRAKYGIRD DMVLPFEPVP VIEIPGFGQL SAVTMCDELK ENSP00000377954/1-1176 AALRDLKKKQ ALRAKYGIRD DMVLPFEPVP VIEIPGFGNL SAVTICDELK ENSBTAP00000008902/1-1176 AALRDLKKKQ ALRVKYGIRD DMVLPFEPVP VIEIPDFGKL SAVTVCDELK bmy_20419T0/1-1017 AAFRDLKKKQ ---------- --------VP VIEIPGFGQL SAVTMCDELK BACU015993/1-1176 AAFRDLKKKQ ALRAKYGIRD DMVLPFEPVP VIEIPGFGQL SAVTVCDELK 451 500 ENSTTRP00000015845/1-1176 VQSQNDREKL AEAKEKLYLR GFYDGVMLVD GFKGQKVQDV KKTIKNKMID ENSP00000377954/1-1176 IQSQNDREKL AEAKEKIYLK GFYEGIMLVD GFKGQKVQDV KKTIQKKMID ENSBTAP00000008902/1-1176 IQSQNDREKL AEAKEKLYLR GFYDGVMLVD GFKGQKVQDV KKTIRNKMID bmy_20419T0/1-1017 VQSQNDREKL AEAKEKLYLR GFYDGVMLVD GFKGQKVQDV KKTIKNKMID BACU015993/1-1176 VQSQNDREKL AEAKEKLYLR GFYDGVMLVD GFKGQKVQDV KKTIKNKMID 501 550 ENSTTRP00000015845/1-1176 TGDAYIYMEP EKQVMSRSSD ECVVALCDQW YLDYGEENWK KQTSQCLKNL ENSP00000377954/1-1176 AGDALIYMEP EKQVMSRSSD ECVVALCDQW YLDYGEENWK KQTSQCLKNL ENSBTAP00000008902/1-1176 TGDAYIYMEP EKQVISRSSD ECVVALCDQW YLDYGEENWK KQTSQCLKNL bmy_20419T0/1-1017 TGDAYIYMEP EKQVMSRSSD ECVVALCDQW YLDYGEENWK KQTSQCLKNL BACU015993/1-1176 TGDAYIYMEP EKQVMSRSSD ECVVALCDQW YLDYGEENWK KKTSQCLKNL 551 600 ENSTTRP00000015845/1-1176 ETFCEETRRN FEATLDWLQE HACSRTYGLG TRLPWDEQWL IESLSDSTIY ENSP00000377954/1-1176 ETFCEETRRN FEATLGWLQE HACSRTYGLG THLPWDEQWL IESLSDSTIY ENSBTAP00000008902/1-1176 ETYCEETRRN FEATLDWLQE HACSRTYGLG TRLPWDEQWL IESLSDSTIY bmy_20419T0/1-1017 ETFCEETRRN FEATLDWLQE HACSRTYGLG TRLPWDEQWL IESLSDSTIY BACU015993/1-1176 ETFCEETRRN FEATLDWLQE HACSRTYGLG TRLPWDEQWL IESLSDSTIY 601 650 ENSTTRP00000015845/1-1176 MAFYTVAHLL QGGNLRGQTE SPLGIRPQQM TKEVWDYVFF KEAPFPKTQI ENSP00000377954/1-1176 MAFYTVAHLL QGGNLHGQAE SPLGIRPQQM TKEVWDYVFF KEAPFPKTQI ENSBTAP00000008902/1-1176 MAFYTVAHLL QGGDLHGQAE SPLGIRPQQM TKEVWDYIFF KEAPFPKTQI bmy_20419T0/1-1017 MAFYTVAHLL QGGNLRGQAE SPLGIRPQQM TKEVWDYVFF KEAPFPKTQI BACU015993/1-1176 MAFYTVVHLL QGGNLRGQAE SPLGIRPQQM TKEVWDYVFF KEAPFPKTQI 651 700 ENSTTRP00000015845/1-1176 PKEKLDQLKQ EFEFWYPVDL RASGKDLIPN HLSYFLYNHV AMWPEESDKW ENSP00000377954/1-1176 AKEKLDQLKQ EFEFWYPVDL RVSGKDLVPN HLSYYLYNHV AMWPEQSDKW ENSBTAP00000008902/1-1176 PKEKLDQLKQ EFEFWYPVDL RASGKDLIPN HLSYFLYNHV AMWPEECDKW bmy_20419T0/1-1017 LKEKLDQLKQ EFEFWYPVDL RASGKDLIPN HLSYFLYNHV AMWPEERN-L BACU015993/1-1176 PKEKLDQLKQ EFEFWYPVDL RASGKDLIPN HLSYFLYNHV AMWPEESDKW 701 750 ENSTTRP00000015845/1-1176 PVAVRANGHL LLNSEKMSKS TGNFLTLTQA LDKYSADGMR LALADAGDTV ENSP00000377954/1-1176 PTAVRANGHL LLNSEKMSKS TGNFLTLTQA IDKFSADGMR LALADAGDTV ENSBTAP00000008902/1-1176 PVAVRANGHL LLNSEKMSKS TGNFLTLSQA VDKYSADGMR LALADAGDTV bmy_20419T0/1-1017 RTYLGPPKHV ---TCQMSKS TGNFLTLTQA LDKYSADGMR LALADAGDTV BACU015993/1-1176 PVAVRANGHL LLNSEKMSKS TGNFLTLTQA LDKYSADGMR LALADAGDTV 751 800 ENSTTRP00000015845/1-1176 EDANFVETMA DAGILRLYTW VEWVKEMVAN WDSLRSGPAN TFNDRVFASE ENSP00000377954/1-1176 EDANFVEAMA DAGILRLYTW VEWVKEMVAN WDSLRSGPAS TFNDRVFASE ENSBTAP00000008902/1-1176 EDANFVEAMA DAGILRLYTW VEWVKEMVAN WDSLRSGPAN TFNDKVFASE bmy_20419T0/1-1017 EDANFVETMA DAGILRLXTW VEWVKEMVAN WDSLRSGPAS TFNDRVFASE BACU015993/1-1176 EDANFVETMA DAGILRLYTW VEWVKEMVAN WDSLRSGPAS TFNDRVFASE 801 850 ENSTTRP00000015845/1-1176 MNAGIIKTDQ NYEKMMFKEA LKTGFFEFQA AKDKYRELAI EGMHRDLVFR ENSP00000377954/1-1176 LNAGIIKTDQ NYEKMMFKEA LKTGFFEFQA AKDKYRELAV EGMHRELVFR ENSBTAP00000008902/1-1176 MNAGIIKTDQ NYEKMMFKEA LKTGFFEFQA AKDKYRELAI EGMHRDLVFR bmy_20419T0/1-1017 MNAGIIKTDQ NYEKMMFKEA LKTGFFEFQA AKDKYRELAI EGMHRDLVFR BACU015993/1-1176 MNAGIIKTDQ NYEKMMFKEA LKTGFFEFQA AKDKYRELAI EGMHRDLVFR 851 900 ENSTTRP00000015845/1-1176 FIEVQTLLLA PFCPHLCEHI WTLLGKPDSV MNASWPLAGP VDESLIRSSQ ENSP00000377954/1-1176 FIEVQTLLLA PFCPHLCEHI WTLLGKPDSI MNASWPVAGP VNEVLIHSSQ ENSBTAP00000008902/1-1176 FIEVQTLLLA PFCPHLCEHI WTLLGKPDSI MTASWPLAGP VDESLIRSSQ bmy_20419T0/1-1017 FIEVQTLLLA PFCPHLCEHI WTLLGKPDSV MNASWPLAGP VDESLIRSSQ BACU015993/1-1176 FIEVQTLLLA PFCPHLCEHI WTLLGKPDSV MNASWPLAGP VDETLIRSSQ 901 950 ENSTTRP00000015845/1-1176 YLMEVAHDLR LRLKNYMIPA KGKKTDKQLP QKPSHCTIYV AKNYPSWQHI ENSP00000377954/1-1176 YLMEVTHDLR LRLKNYMMPA KGKKTDKQPL QKPSHCTIYV AKNYPPWQHT ENSBTAP00000008902/1-1176 YLMEVAHDLR LRLKNYMMPA KGKKTDKQPP EKPSHCTIYV AKNYPSWQHI bmy_20419T0/1-1017 YLMEVAHDLR LRLKNYMIPA KGKKTDKQHP QKPSHCTIYV AKNYPSWQHI BACU015993/1-1176 YLMEVAHDLR LRLKNYMIPA KGKKTDKQHP QKPSHCTIYV AKNYPSWQHI 951 1000 ENSTTRP00000015845/1-1176 TLSVLRHHFE TNSGKLPDNK VIASELVNLP ELKKYMKKVM PFVAMIKENL ENSP00000377954/1-1176 TLSVLRKHFE ANNGKLPDNK VIASELGSMP ELKKYMKKVM PFVAMIKENL ENSBTAP00000008902/1-1176 TLSVLRNHFE SNSGKLPDNK VIAGELGSLP ELKKYMKKVM PFVAMIKENL bmy_20419T0/1-1017 TLSVLRHHFE TNSGKLPDNK VIASELVNLP ELKKYMKKVM PFVAMIKENL BACU015993/1-1176 TLSVLRHHFE TNSGKLPDNK VIASELVNLP ELKKYMKKVM PFVAMIKENL 1001 1050 ENSTTRP00000015845/1-1176 EKMGPRVLDL QLEFDEQAVL MENIVYLTNS LELEHIEVKF ASEAEDKVRE ENSP00000377954/1-1176 EKMGPRILDL QLEFDEKAVL MENIVYLTNS LELEHIEVKF ASEAEDKIRE ENSBTAP00000008902/1-1176 EKMGPHVLDL QLEFDEQAVL MENIVYLTNS LELEHIEVKF ASEAEDKVRE bmy_20419T0/1-1017 EKMGPRVLDL QLEFDEQAVL MENIVYLTNS L--------- ---------- BACU015993/1-1176 EKMGPRVLDL QLEFDEQAVL MENIVYLTNS LELEHIEVKF ASEAEDKVRE 1051 1100 ENSTTRP00000015845/1-1176 DCCPGKPLNV FRTEXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377954/1-1176 DCCPGKPLNV FRIEPGVSVS LVNPQPSNGH FSTKIEIRQG DNCDSIIRRL ENSBTAP00000008902/1-1176 DCCPGKPLNV FRTEPGVLVS LLNPQPFSGH FSTKIEIRQG DNRDSILRRL bmy_20419T0/1-1017 ---------- ---EPGVSVS LVNSQPFNGH FSTKIEIRQG DNRDSIIRRL BACU015993/1-1176 DCCPGKPLNV FRTEPGVSVS LVNSQPFNGH FSTKIEIRQG DNRDSIIRRL 1101 1150 ENSTTRP00000015845/1-1176 XXXXXXXXXL SKVKLMRFDD PLLGPRRVPV LGKEHAEKTP ISEHAVFHVD ENSP00000377954/1-1176 MKMNRGIKDL SKVKLMRFDD PLLGPRRVPV LGKEYTEKTP ISEHAVFNVD ENSBTAP00000008902/1-1176 MKVDRGIKDL SKVKLMRFDD PVLGPRRVPV LGKEHAEKTP ISEHAVFHVD bmy_20419T0/1-1017 MKVDRGIKDL SKVKLMRFDD PLLGPRRVPV LGKEHAEKTP ISEHAVFHVD BACU015993/1-1176 MKVDRGIKDL SKVKLMRFDD PLLGPRRVPV LGKEHAEKTP ISEHAVFHVD 1151 1200 ENSTTRP00000015845/1-1176 LTSKKIHLTE NGLWADIGDT MIYLVH ENSP00000377954/1-1176 LMSKKIHLTE NGIRVDIGDT IIYLVH ENSBTAP00000008902/1-1176 LMNKKIHLTE NGLRADIGDT MIYLVH bmy_20419T0/1-1017 LTSKKIHLTE NGLRADIGDT MIYLVH BACU015993/1-1176 LTSKKIHLTE NGLRADIGDT MINLVH