KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:38 2014 Check: 00 .. Name: ENSTTRP00000009152/1-533 Len: 549 Check: 3315 Weight: 1.00 Name: ENSBTAP00000008907/1-533 Len: 549 Check: 5012 Weight: 1.00 Name: ENSP00000358417/1-533 Len: 549 Check: 4222 Weight: 1.00 Name: BACU019599/1-531 Len: 549 Check: 3152 Weight: 1.00 Name: bmy_15109T0/1-533 Len: 549 Check: 6920 Weight: 1.00 // 1 50 ENSTTRP00000009152/1-533 MAFANLRKVL ISDSLDPCCR KILQDGGLQV VEKQNLSQEE LIAELQDCEG ENSBTAP00000008907/1-533 MAFANLRKVL ISDSLDPCCR KILQDGGLQV VEKQNLSKEE LIAELQDCEG ENSP00000358417/1-533 MAFANLRKVL ISDSLDPCCR KILQDGGLQV VEKQNLSKEE LIAELQDCEG BACU019599/1-531 MAFADLRKVL ISDSLDPCCR KILQDGGLQV VEKQNLSKEE LIAELQDCEG bmy_15109T0/1-533 MAFADLRKVL ISDSLDPCCR KILQDGGLQV VEKQNLSXEE LIAELQDCEG 51 100 ENSTTRP00000009152/1-533 LIVRSATKVT SDVINATKKL QVVGRAGTGV DNVDLEAATR KGILVMNTPS ENSBTAP00000008907/1-533 LIVRSATKVT SDIINAAEKL QVVGRAGTGV DNVDLEAATR KGILVMNTPN ENSP00000358417/1-533 LIVRSATKVT ADVINAAEKL QVVGRAGTGV DNVDLEAATR KGILVMNTPN BACU019599/1-531 LIVRSGTKVT SDVINATKKL QVVGRAGTGV DNVDLEAATR KGILVMNTPS bmy_15109T0/1-533 LIVRSGTKVT SDVINATKKL QVVGRAGTGV DNVDLEAATR KGILVMNTPS 101 150 ENSTTRP00000009152/1-533 GNSLSAAELT CGMIMCLARQ IPQATASMKD GKWERKKFMG TELNGKILGI ENSBTAP00000008907/1-533 GNSLSAAELT CGMIMCLARQ IPQAAASMKD GKWERKKFMG TELNGKVLGI ENSP00000358417/1-533 GNSLSAAELT CGMIMCLARQ IPQATASMKD GKWERKKFMG TELNGKTLGI BACU019599/1-531 GNSLSAAELT CGMIMCLARQ IPQATASMKN GKWERKKFMG TELNGKILGI bmy_15109T0/1-533 GNSLSAAELT CGMIMCLARQ IPQATASMKN GKWERKKFMG TELNGKILGI 151 200 ENSTTRP00000009152/1-533 LGLGRIGREV ATRMQSFGMK TIGYDPIISP EVSASFGVQQ VPLEEIWPLC ENSBTAP00000008907/1-533 LGLGRIGREV ATRMQSFGMK TIGYDPIISP EVSASFGVQQ LPLEQIWPLC ENSP00000358417/1-533 LGLGRIGREV ATRMQSFGMK TIGYDPIISP EVSASFGVQQ LPLEEIWPLC BACU019599/1-531 LGLGRIGREV ATRMQSFGMK TIGYDPIISP EVSASFGVQQ VPLEEIWPLC bmy_15109T0/1-533 LGLGRIGREV ATRMQSFGMK TIGYDPIISP EVSASFGVQQ VPLEEIWPLC 201 250 ENSTTRP00000009152/1-533 DFITVHTPLL PSTTGLLNDS TFAQCKKGVR VVNCARGGIV DEGALLRALQ ENSBTAP00000008907/1-533 DFITVHTPLL PSTTGLLNDS TFAQCKKGVC VVNCARGGIV DEGALLRALQ ENSP00000358417/1-533 DFITVHTPLL PSTTGLLNDN TFAQCKKGVR VVNCARGGIV DEGALLRALQ BACU019599/1-531 DFITVHTPLL PSTTG----S TFAQCKKGVR VVNCARGGIV DEGALLRALQ bmy_15109T0/1-533 DFITVHTPLL PSTTGLLNDS TFAQCKKGVR VVNCARGGIV DEGALLRALQ 251 300 ENSTTRP00000009152/1-533 SGQCAGAALD VFTEEPPRDR ALVDHENVIS CPHLGASTKE AQSRCGEEIA ENSBTAP00000008907/1-533 SGQCAGAALD VFTEEPPRDR ALVNHENVIS CPHLGASTKE AQSRCGEEIA ENSP00000358417/1-533 SGQCAGAALD VFTEEPPRDR ALVDHENVIS CPHLGASTKE AQSRCGEEIA BACU019599/1-531 SGQCAGAALD VFTEEPPRNR ALVDHENVIS CPHLGASTKE AQSRCGEEIA bmy_15109T0/1-533 SGQCAGAALD VFTEEPPQNR ALVDHENVIS CPHLGASTKE AQRRCGEEIA 301 350 ENSTTRP00000009152/1-533 VQFVDMVKGK SLAGVVNAQA LTSAFSPHTK PWIGLAEALG ALMQAWAGSP ENSBTAP00000008907/1-533 LQFVDMVKGK ALAGVVNAQA LASIFCPHTK PWVSLAKALG ALMQAWAGSP ENSP00000358417/1-533 VQFVDMVKGK SLTGVVNAQA LTSAFSPHTK PWIGLAEALG TLMRAWAGSP BACU019599/1-531 IQFVDMVKGK SLAGVVNAQA LTSAFSPHTK PWIGLAEALG ALMQAWAGSP bmy_15109T0/1-533 IQFVDMVKGK SLAGVVNAQA LTSAFSPHTK PWIGLAEALG ALMQAWAGSP 351 400 ENSTTRP00000009152/1-533 KGTIQVVTQX XX-------- --------XX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008907/1-533 KGAIQVVTQG SS-------- --------LK NSGSCLAPAV IIGLLKDASQ ENSP00000358417/1-533 KGTIQVITQG TS-------- --------LK NAGNCLSPAV IVGLLKEASK BACU019599/1-531 KGTIQVVTQE AAGSRALTSP FFSPHCSPIS QAGHCFCAGS RRGW------ bmy_15109T0/1-533 KGTIQVVTQG LS-------- --------LK NSGNCLTPAV IVGLLKGASR 401 450 ENSTTRP00000009152/1-533 XXXXXXXXXX XXXXXXXXXV TTSHSPAAPG EQGCGKCLLT VALAGAPYQA ENSBTAP00000008907/1-533 QSNVNLVNAM LLVKEAGLDV TTSHNPATPG KQDFGECLLT VALAGAPYQA ENSP00000358417/1-533 QADVNLVNAK LLVKEAGLNV TTSHSPAAPG EQGFGECLLA VALAGAPYQA BACU019599/1-531 --------AS LCLFAFSLQV TTSHSPAAPG EQGCGECLLT VALAGAPYQA bmy_15109T0/1-533 QVEVNLVNAK LLVKETGLNV TTSHSPAAPG EQGCGKCLLT VALAGAPYQA 451 500 ENSTTRP00000009152/1-533 VGWVQGTTPV LQALNGAVFR PEVPLHRGLP LLMFRTHPSN PAMLPTMIGL ENSBTAP00000008907/1-533 VGLVQGTKPV LQALNGAVFR PEVPLHPGQP LLMFRAQASN PAMLPTMIGL ENSP00000358417/1-533 VGLVQGTTPV LQGLNGAVFR PEVPLRRDLP LLLFRTQTSD PAMLPTMIGL BACU019599/1-531 VGWVQGTTPV LQALNGAVFR PEVPLHRGLP LLMFRAHPSN PAMLPTMIGL bmy_15109T0/1-533 VGWVQGTTPV LQALNGAVFR PEVPLHRGLP LLMFRAHPSN PVMLPTMIGL 501 550 ENSTTRP00000009152/1-533 LAESEVQLLS YQTSMVSDGE TWHVMGISSL LPSLEPWKQH ATEAFQFHF ENSBTAP00000008907/1-533 LAEAGVQLLS YQSSVVSDGE TWHVMSISSL LPSLAPWKPH VTEAFQFCF ENSP00000358417/1-533 LAEAGVRLLS YQTSLVSDGE TWHVMGISSL LPSLEAWKQH VTEAFQFHF BACU019599/1-531 LEKAEVQLLS YQTSMVSDGE TWHVMGISSL LPSLEPWKQH AAEAFQFHF bmy_15109T0/1-533 LEEAEVQLLS YQTSMVSDGE TWHVMGISSL LPSLEPWKQH ATEAFQFHF