KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:36:41 2014 Check: 00 .. Name: bmy_21177T0/1-359 Len: 360 Check: 5298 Weight: 1.00 Name: ENSP00000330774/1-262 Len: 360 Check: 4323 Weight: 1.00 Name: ENSBTAP00000008944/1-261 Len: 360 Check: 4709 Weight: 1.00 Name: BACU007116/1-261 Len: 360 Check: 5718 Weight: 1.00 // 1 50 bmy_21177T0/1-359 MGETFSQLGS -REDENKSIL SPDPAFGSKA ASYSSTTSSK PFCSCVPCER ENSP00000330774/1-262 MGKTFSQLGS WREDENKSIL SSKPAIGSKA VNYSSTGSSK SFCSCVPCEG ENSBTAP00000008944/1-261 MGETFSQLAS -QKDENKLIL PPNPAFGSKA ASYSSMGNSR PFFSCVPCER BACU007116/1-261 MGETFSQLGS -RENENKSIL SPDPAFGSKA ASYSSTTSSK PFCSCVPCER 51 100 bmy_21177T0/1-359 AAGVSFVTCP TCQGSGEIPR EMAKLSCQQP SIPSPALRQR WHASDTALWD ENSP00000330774/1-262 TADASFVTCP TCQGSGKIPQ ---------- ---------- ---------- ENSBTAP00000008944/1-261 AAGAGFVTCP TCQGSGEIPR ---------- ---------- ---------- BACU007116/1-261 AAGVSFVTCP TCQGSGEIPR ---------- ---------- ---------- 101 150 bmy_21177T0/1-359 GGVLLAGWHR KHLSWTLVGP PSHPLSTELE KQLVALIPYG DQRLKPRHTK ENSP00000330774/1-262 ---------- ---------- -------ELE KQLVALIPYG DQRLKPKHTK ENSBTAP00000008944/1-261 ---------- ---------- -------ELE KQLVALIPYG DQRLKPRHTK BACU007116/1-261 ---------- ---------- -------ELE KQLVALIPYG DQRLKPRHTK 151 200 bmy_21177T0/1-359 LFVFLAVFIC LVTSSLIVFF LFPRTIAVQP VGLNSSTVTV DEADIHLNIT ENSP00000330774/1-262 LFVFLAVLIC LVTSSFIVFF LFPRSVIVQP AGLNSSTVAF DEADIYLNIT ENSBTAP00000008944/1-261 LSVFLAVSIC LVTSSLIIFF LFPRTIAVQP VGLNSSTVAT DEANVYLNIT BACU007116/1-261 LFVFLAVFIC LVTSSLIVFF LFPRTIAVQP VGLNSSTVTV DEADIHLNIT 201 250 bmy_21177T0/1-359 NILSISNNNY YPIAVTQLTI EVLHLSLVVG QVSNRLLLRI GPLASEQQDL ENSP00000330774/1-262 NILNISNGNY YPIMVTQLTL EVLHLSLVVG QVSNNLLLHI GPLASEQ--M ENSBTAP00000008944/1-261 SILNISNNNY CPITVTQLTI EVLHLSLVVG QVSHSLLLHI GPLASEQ--M BACU007116/1-261 NILSVSNNNY YPVAVTQLTI EVLHLSLVVG QVSNRLLLRI GPLASEQ--M 251 300 bmy_21177T0/1-359 YLAENQSPPR ASAHPVSRAW SPGTPLPLLP HPRGRRVIAA NPGHPDLFLP ENSP00000330774/1-262 FYAVATKIRD ENTYKIC-TW LEIKVHHVLL HIQG-TLTCS YLSHSEQLVF ENSBTAP00000008944/1-261 FYAVTNRIND ENTYKIC-TW LEIKVHHVLL YIQG-TLTYS YLSRSEQLVF BACU007116/1-261 LYTVANRIWD ENTYKIC-TW LKIKVHHVLL HIQG-TLTCS YLSHSEQLVF 301 350 bmy_21177T0/1-359 EPFRAAGLPE LRICGLPGKH IQAPLAGPSP AVTCLLSSSS GHLPAWSVSP ENSP00000330774/1-262 QSYE------ ---------- ---------- YVDCRGNASV PHQ----LTP ENSBTAP00000008944/1-261 QSYE------ ---------- ---------- YVDCRGNTSV PHL----LVS BACU007116/1-261 QSYE------ ---------- ---------- YVDCRGNTSK PHL----LVP 351 400 bmy_21177T0/1-359 TTPWHPTGRE ENSP00000330774/1-262 HPP------- ENSBTAP00000008944/1-261 HPP------- BACU007116/1-261 RPP-------