KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:53 2014 Check: 00 .. Name: ENSTTRP00000008675/1-680 Len: 722 Check: 9291 Weight: 1.00 Name: ENSP00000288266/1-709 Len: 722 Check: 3414 Weight: 1.00 Name: ENSBTAP00000008971/1-708 Len: 722 Check: 3431 Weight: 1.00 Name: bmy_05648T0/1-639 Len: 722 Check: 4788 Weight: 1.00 Name: BACU015063/1-654 Len: 722 Check: 3403 Weight: 1.00 // 1 50 ENSTTRP00000008675/1-680 ---------- --------TR SLLGVFEEDA TAISNYMNQL YQAMHRIYDA ENSP00000288266/1-709 MPGIDKLPIE ETLEDSPQTR SLLGVFEEDA TAISNYMNQL YQAMHRIYDA ENSBTAP00000008971/1-708 MPGIDKLPIE ETLEDSPQTR SLLGVFEEDA TAISNYMNQL YQAMRRIYDA bmy_05648T0/1-639 MPGIDKLPIE ETLEDSP--- ---------- ---------- ---------- BACU015063/1-654 ---------- --------TR SLLGVFEEDA TAISNYMNQL YQAMHRIYDA 51 100 ENSTTRP00000008675/1-680 QXXXXXXXXX XXKLLKEYEN QRFPLGGDDE VMSSTLQQFS KVIDELSSCH ENSP00000288266/1-709 QNELSAATHL TSKLLKEYEK QRFPLGGDDE VMSSTLQQFS KVIDELSSCH ENSBTAP00000008971/1-708 QNELSAATHL TSKLLKEYEK QRFPLGGDDE VMSSTLQQFS KVIDELSSCH bmy_05648T0/1-639 QNELSAATHL TSKLLKEYEK QRFPLGGDDE VMTSTLQQFS KVIDELSSCH BACU015063/1-654 QNELSAATHL TSKLLKEYEK QRFPLGGDDE VMSSTLQQFS KVIDELSSCH 101 150 ENSTTRP00000008675/1-680 AVLSTQLADA MMFPITQFKE RDLKXXXXXX XXXXXXXXXH DAAINRYSRL ENSP00000288266/1-709 AVLSTQLADA MMFPITQFKE RDLKEILTLK EVFQIASNDH DAAINRYSRL ENSBTAP00000008971/1-708 AVLSTQLADA MMFPITQFKE RDLKEILTLK EVFQIASNDH DAAINRYSRL bmy_05648T0/1-639 AVLSTQLADA MMFPITQFKE RDLKEILTLK EVFQIASNDH DAAINRYSRL BACU015063/1-654 AVLSTQLADA MMFPITQFKE RDLK------ --------DH DAAINRYSRL 151 200 ENSTTRP00000008675/1-680 SKKRENDKVK YEVTEDVYTS RKKQHQTMMH YFCALNTLQY KKKIALLEPL ENSP00000288266/1-709 SKKRENDKVK YEVTEDVYTS RKKQHQTMMH YFCALNTLQY KKKIALLEPL ENSBTAP00000008971/1-708 SKKRENDKVK YEVTEDVYTS RKKQHQTMMH YFCALNTLQY KKKIALLEPL bmy_05648T0/1-639 SKKRENDK-- ---------- ---------- ---------- ---------- BACU015063/1-654 SKKRENDKVK YEVTEDVYTS RKKQHQTMMH YFCALNTLQY KKKIALLEPL 201 250 ENSTTRP00000008675/1-680 LGYMQAQISF FKMGSENLND QLEEFLTNIG TSVQNVRREM DSDVETMQQT ENSP00000288266/1-709 LGYMQAQISF FKMGSENLNE QLEEFLANIG TSVQNVRREM DSDIETMQQT ENSBTAP00000008971/1-708 LGYMQAQISF FKMGSENLND QLEEFLTNIG TSVQNVRREM DSDVETMQQT bmy_05648T0/1-639 -------ISF FKMGSENLND QLEEFLTNIG TSVQNVRREM DSDVETMQQT BACU015063/1-654 LGYMQAQISF FKMGSENLND QLEEFLTNIG TSVQ---KEM DSDVETMQQT 251 300 ENSTTRP00000008675/1-680 IEDLEVASDP LYVPDPDPTK FPVNRNLTRK AGYLNARXXX XXXXXXXXXX ENSP00000288266/1-709 IEDLEVASDP LYVPDPDPTK FPVNRNLTRK AGYLNARNKT GLVSSTWDRQ ENSBTAP00000008971/1-708 IEDLEVASDP LYVPDPDPTK FPVHRNLTRK AGYLNARNKT GLVSSTWDRQ bmy_05648T0/1-639 IEDLEVASDP LYVPDPDPTK FPVNRNLTRK AGYLNARNKT GLVSSTWDRQ BACU015063/1-654 IEDLEVASDP LYVPDPDPTK FPVNRNLTRK AGYLNARNKT GLVSSTWDRQ 301 350 ENSTTRP00000008675/1-680 XXXXXXXXXX SQARGDVAGG LAMDIDNCSV MAVDCEDRRY CFQITSFDGK ENSP00000288266/1-709 FYFTQGGNLM SQARGDVAGG LAMDIDNCSV MAVDCEDRRY CFQITSFDGK ENSBTAP00000008971/1-708 FYFTQGGNLM SQARGDVAGG LAMDIDNCSV MAVDCEDRRY CFQITSFDGK bmy_05648T0/1-639 FYFTQGGNLM SQARGDVAGG LAMDIDNCSV MAVDCEDRRY CFQITSFDGK BACU015063/1-654 FYFTQGGNLM SQARGDVAGG LAMDIDNCSV MAVDCEDRRY CFQITSFDGK 351 400 ENSTTRP00000008675/1-680 KSSILQAESK KDHEEWICTI NNISKQIYLS ENPEEIAARV NQSALEAVTP ENSP00000288266/1-709 KSSILQAESK KDHEEWICTI NNISKQIYLS ENPEETAARV NQSALEAVTP ENSBTAP00000008971/1-708 KSSILQAESK KDHEEWICTI NNISKQIYLS ENPEEIAARV NQSALEAVTP bmy_05648T0/1-639 KSSILQAESK KDHEEWICTI NNISKQIYLT ENPEEIAARV NQSALEAVTP BACU015063/1-654 KSSILQAESK KDHE------ ---------- ---EEIAARV NQSALEAVTP 401 450 ENSTTRP00000008675/1-680 SPSFQQRHES LRP-AGQSRP LTARTSSSGS IGSEPTNLAA LSLDSLVAPD ENSP00000288266/1-709 SPSFQQRHES LRPAAGQSRP PTARTSSSGS LGSESTNLAA LSLDSLVAPD ENSBTAP00000008971/1-708 SPSFQQRHES LRP-AGQSRP PTARTSSSGS LGSESTNLAA LSLDSLVAPD bmy_05648T0/1-639 SPSFQQRHES LRP-AGQSRP LTPRTSSSGS IASESTNLAA LSLDSLVAPD BACU015063/1-654 SPSFQQRHES LRP-AGQSRP LTARTSSSGS IASESTNLAA LSLDSLVAPD 451 500 ENSTTRP00000008675/1-680 TPIQFDIISP VCEDQPGQAK ASGQGGRRTN PFGESGGGTK SETEDSILHQ ENSP00000288266/1-709 TPIQFDIISP VCEDQPGQAK AFGQGGRRTN PFGESGGSTK SETEDSILHQ ENSBTAP00000008971/1-708 TPIQFDIISP VCEDQSGQAK ASGQGGRRTN PFGESGGGTK SETEESILHQ bmy_05648T0/1-639 TPIQFDIISP VCEDQPGQAK ASGQGGRRTN PFGESGGGTK SETEDSILHQ BACU015063/1-654 TPIQFDIISP VCEDQPGQAK ASGQGGRRTN PFGESGGGTR SETEDSILHQ 501 550 ENSTTRP00000008675/1-680 LFIVRFLGSM EVKSDDNPDV VYETMRQILA ARAIHNIFRM TESHLLVSCD ENSP00000288266/1-709 LFIVRFLGSM EVKSDDHPDV VYETMRQILA ARAIHNIFRM TESHLLVTCD ENSBTAP00000008971/1-708 LFIVRFLGSM EVKSDDNPDV VYETMRQILA ARAIHNIFRM TESHLLVTCD bmy_05648T0/1-639 LFIVRFLGSM EVKSDDNPDV VYETMRQILA ARAIHNIFRM TESHLLVSCD BACU015063/1-654 LFIVRFLGSM EVKSDDNPDV VYETMRQILA ARAIHNIFRM TESHLLVSCD 551 600 ENSTTRP00000008675/1-680 CLKLIDPQTQ VTRLMFPLPS VVLYATHQEN KRLFGFVLRT SGGRSESNLS ENSP00000288266/1-709 CLKLIDPQTQ VTRLTFPLPC VVLYATHQEN KRLFGFVLRT SSGRSESNLS ENSBTAP00000008971/1-708 CLKLIDPQTQ VTRLTFPLPS VVLYATHQEN KRLFGFVLRT SGGRSESNLS bmy_05648T0/1-639 CLKLIDPQTQ VTRLMFPLPS VVLYATHQEN KRLFGFVLRT SGGRSESNLS BACU015063/1-654 CLKLIDPQTQ VTRLMFPLPS VVLYATHQEN KRLFGFVLRT SGGRSESNLS 601 650 ENSTTRP00000008675/1-680 SVCYIFESNN EGEKI----- --------CD SVG------- ---LDRRASE ENSP00000288266/1-709 SVCYIFESNN EGEKI----- --------CD SVGLAKQIAL HAELDRRASE ENSBTAP00000008971/1-708 SVCYIFESNN EGEKI----- --------CD SVGLAKQIAL HAELDRRASE bmy_05648T0/1-639 SVCYIFESNN EGEKVRGFSK CVSVVKYICD SVGLAKQIAL HAELDRRASE BACU015063/1-654 SVCYIFESNN EGEKI----- --------CD SVGLAKQIAL HAELDRRASE 651 700 ENSTTRP00000008675/1-680 KQKEIERVKE KQQKELSKQK QIEKDLEEQS RLIAASSRPN QASSEGQFVV ENSP00000288266/1-709 KQKEIERVKE KQQKELNKQK QIEKDLEEQS RLIAASSRPN QASSEGQFVV ENSBTAP00000008971/1-708 KQKEIERVKE KQQKELSKQK QIEKDLEEQS RLIAASSRPN QASSEGQFVV bmy_05648T0/1-639 KQKEIERVKE KQQKELSKQK QIEKDLEEQS RLIAASSRPN QASSEGQFVV BACU015063/1-654 KQKEIERVKE KQQKELSKQK QIEKDLEEQS RLIAASSRPN QASSEGQFVV 701 750 ENSTTRP00000008675/1-680 LSSSQSEESD LGEEGKKRES EA ENSP00000288266/1-709 LSSSQSEESD LGEGGKKRES EA ENSBTAP00000008971/1-708 LSSSQSEESD LGEEGKKRES EA bmy_05648T0/1-639 LSSSQSEESD LGEEGKKRES EA BACU015063/1-654 LSSSQSEESD LGEEGKKRES EA