KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:36:53 2014 Check: 00 .. Name: ENSP00000280082/1-654 Len: 671 Check: 8288 Weight: 1.00 Name: ENSBTAP00000008973/1-544 Len: 671 Check: 2866 Weight: 1.00 Name: bmy_18137T0/1-601 Len: 671 Check: 5075 Weight: 1.00 Name: ENSTTRP00000002051/1-652 Len: 671 Check: 4555 Weight: 1.00 // 1 50 ENSP00000280082/1-654 MAKFGVHRIL LLAISLTKCL ESTKLLADLK KCGDLECEAL INRVSAMRDY ENSBTAP00000008973/1-544 MADLKIHRIF LLVISLTKCL ESTKLLADFK KCGDLECEAL ISRVFAIRDY bmy_18137T0/1-601 MADLGVHRIL LLVISLTKCL EGTKLLADLK KCGDLECER- ---------- ENSTTRP00000002051/1-652 MADLGVHRIL LLVISLTKCL EGTKLLADLK KCGDLECEX- ---------- 51 100 ENSP00000280082/1-654 RGPDCRYLNF TKGEEISVYV KLAGEREDLW ---------- ---AGSKGKE ENSBTAP00000008973/1-544 RGPDCRYLNF TKGEEISVYV KLSGKREDLW ---------- ---AGSKGKD bmy_18137T0/1-601 --PDCRYLNF TKGEEISVYV KLAGEREDLW ---------- ---AGSE-RT ENSTTRP00000002051/1-652 --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXKGKD 101 150 ENSP00000280082/1-654 FGYFPRDAVQ IEEVFISEEI QMSTKESDFL CLLGV--SYT FDNEDSELNG ENSBTAP00000008973/1-544 FGYFPRDAVQ IEEVFISEEV QIPTKESDFF CLLGI--SYI FENEASELNS bmy_18137T0/1-601 LGIFP----- --------EM QSRLKRCSYL RKLKYQQNYT FENEDSELNS ENSTTRP00000002051/1-652 FGYFPKDAVQ IEEVFISEEV EISTKESDFL CLLGI--SYT FENEDSELNS 151 200 ENSP00000280082/1-654 DYGENIYPYE EDKDEKSSIY ESDFQIEPGF YATYESTLFE DQVPALEAPE ENSBTAP00000008973/1-544 DNSENMYPYE EDNDPKSSVY ESDFQIEPGF YSTSESSLFE DQFPASEAPE bmy_18137T0/1-601 DNGENTYPYE EDKEPKSRVY ESDFQIDLGF YSTSESTLFE DQFPASEAPE ENSTTRP00000002051/1-652 GNGENIYPYE EGKEPKSRVY ENDFQIDLGF YSTSESTLFE DQFPASEAPE 201 250 ENSP00000280082/1-654 DIGSTSESKD WEEVVVESME QDRIPEV-HV PPSSAVSGVK EWFGLGGEQA ENSBTAP00000008973/1-544 DIRSTSELED WEA-EAESIK QYLIPEEDHV PPSSAVPEVK GWFGFGKDQA bmy_18137T0/1-601 DIRSTSESKD WEAVEAGNVE QYPIPEGDHV PPSSAIPEVK GWFGFGKDQA ENSTTRP00000002051/1-652 DIRSTSESKD WESVEAGNVE QYPIPEGDHV LPSSAIPEVK GWFGFGKDQA 251 300 ENSP00000280082/1-654 EEKAFESVIE PVQESSFRSR KIAVEDENDL EELNNGEPQT EHQQESESEI ENSBTAP00000008973/1-544 EEKPFESVTD PQEESSFLSR QIAVEDENDP EELNSGEPQT ERKQELELEF bmy_18137T0/1-601 GEKTFESVTE PLEESSFRSR KITVEDENDP EGLNNGEPQT EHKQELESEF ENSTTRP00000002051/1-652 GEKT-ESXXX XXXXXXXXXX XXXXXDENDP EGLNNGEPQR EHKQELESEF 301 350 ENSP00000280082/1-654 DSVPKTQSE- LASESEHIPK PQSTGWFGGG FTSYLGFGDE DTGLELIAEE ENSBTAP00000008973/1-544 DSVPKEQSEL LVSELEHSLN PQDTGWFGGG FTSYLGFGGK DTELELSSKE bmy_18137T0/1-601 DSVPKKQSE- LVSESEHILN PQDTGWFGGG FTSYFGFGGE DTGLELLSKE ENSTTRP00000002051/1-652 DSVPKKQSE- LVSESEHILN PQDTGWFGGG FTSYFDFGGE DTGLELLSKE 351 400 ENSP00000280082/1-654 SNPPLQDFPN SISSDKEATV PCTEILTEKK DTITNDSLSL KPSWFDFGFA ENSBTAP00000008973/1-544 SNPPLEDVLS SISSEEESTV PCTEILTEKE DIITNESSIL KPSWFDFGFA bmy_18137T0/1-601 SNPPLQDVPS SISSEEEPTV PCTEILIEKE DTITNDSSIL KPSWFDFGFA ENSTTRP00000002051/1-652 SNPPLQDVPS SISSEEEPTV PYTEILTEKE DTITNDSSIL EPSWFDFGFA 401 450 ENSP00000280082/1-654 ILGFAYAKED KIMLDDRKNE EDGGADEHEH PLTSELDPEK EQEIETIKII ENSBTAP00000008973/1-544 MLGFAYANED KMISDDGKNE EGSEEDKHRH PSTSEFDPDK EQEIKLIKVM bmy_18137T0/1-601 MLGFAYANED KIISDDGKNE EEGGGDKHGH PPTSEFDTDK EQEIKITKIM ENSTTRP00000002051/1-652 MLGFSYANED KIISDDGKNE EEGGGDKHGH PPTSEFDPDK EQEIKIIKIM 451 500 ENSP00000280082/1-654 ETEDQIDKKP VSEKTDESDT IPYLKKFLYN FDNPWNFQNI PKETELPFPK ENSBTAP00000008973/1-544 ETENQIGKER VLEKTEDSDT VPYFKKLLYN FDNRWRFQNT PKEMELTFPK bmy_18137T0/1-601 ETENQIGKQM VLEKTDDSDT LPYFKKFLYT FDNPWNFQNI LKETELPFPK ENSTTRP00000002051/1-652 ETENQIGKKR VLEKTDDSDT LPYFKKFLYT FDNPWNLQNI PKETELPFPK 501 550 ENSP00000280082/1-654 QILDQNNVIE NEETGEFSID NYPTDNTKVM IFKSSYSLSD MVSNIELPTR ENSBTAP00000008973/1-544 QTLDESNVGE NDETEEFSAE KYPTDNIED- TLKSGYSQPG ---------- bmy_18137T0/1-601 ETLDENNGGE NDKREEFSVE YYPTDNTEDM XLKDGY---N MVSKIELSMR ENSTTRP00000002051/1-652 ETLDENNGGE NDKR-EFSVE YYPTDNTEDM MLKNGYGQPD MVSKIELSMR 551 600 ENSP00000280082/1-654 IHEEVYFEPS SSKDSDENSK PSVDTEGPAL VEIDRSVENT LLNSQMVSTD ENSBTAP00000008973/1-544 -----YFK-- ---------- ---------- --------NT FHYFKI---- bmy_18137T0/1-601 IHEEVHFKTL SSENNDEKSK TSLDTERPAQ VEIDTFVENT LSNSQIFSTD ENSTTRP00000002051/1-652 VHEEVHFKTL SSENNDEKSE TSLDTERPTQ VEIDTFVENT LSNSQIFSTD 601 650 ENSP00000280082/1-654 NSLSSQNYIS QKEDASEFQI LKYLFQIDVY DFMNSAFSPI VILTERVSLP ENSBTAP00000008973/1-544 -GLVSKLYFI L--------- ---------- ---------- ---------- bmy_18137T0/1-601 YSLSSQDYVA QKEDASECQI LKYLFQIDVY DFLNSAFSPI VVLTE----- ENSTTRP00000002051/1-652 YSLSSQNYVA LKEDASECQI LKYLYQIDVY DFLNSAFSPI VVLTERVS-R 651 700 ENSP00000280082/1-654 FKPFAIILPI LLNIRVATKY V ENSBTAP00000008973/1-544 ---------- ---------- - bmy_18137T0/1-601 ---------- ---------- - ENSTTRP00000002051/1-652 FRCFSIILPI LLSIGTAENY V