KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:56 2014 Check: 00 .. Name: ENSP00000313454/1-1052 Len: 1063 Check: 7107 Weight: 1.00 Name: ENSBTAP00000008985/1-1057 Len: 1063 Check: 8511 Weight: 1.00 Name: ENSTTRP00000007361/1-1047 Len: 1063 Check: 7112 Weight: 1.00 Name: bmy_18324T0/1-533 Len: 1063 Check: 3805 Weight: 1.00 Name: BACU015716/1-1052 Len: 1063 Check: 5840 Weight: 1.00 // 1 50 ENSP00000313454/1-1052 MEGSEPVAAH QGEEASCSSW GTGSTNKNLP IMSTASVEID DALYSRQRYV ENSBTAP00000008985/1-1057 MEGSLPVAAR PGEEASCSSW RTSRANTNFS IMPTESVEID DALYSRQRYV ENSTTRP00000007361/1-1047 MEGSQPVAAR QGEEASCSSW GAGSVNTNLP -MPTESVEID DALYXXXXXX bmy_18324T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU015716/1-1052 MEGSQPVAAR QGEEASCSSW GAGSVNTNLP NMPTESVEID DALYSRQRYV 51 100 ENSP00000313454/1-1052 LGDTAMQKMA KSHVFLSGMG GLGLEIAKNL VLAGIKAVTI HDTEKCQAWD ENSBTAP00000008985/1-1057 LGDTAMQKMA KSHVFLSGMG GLGLEIAKNL VLAGIKALTI HDTEKCQAWD ENSTTRP00000007361/1-1047 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXALTI HDTEECQAXX bmy_18324T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU015716/1-1052 LGDTAMQKMA KSHVFLSGMG GLGLEIAKNL VLAGIKALTI HDTEECQAWD 101 150 ENSP00000313454/1-1052 LGTNFFLSED DVVNKRNRAE AVLKHIAELN PYVHVTSSSV PFNETTDLSF ENSBTAP00000008985/1-1057 LGTNFFLCED DVVNIRNRAE AVLQHIAELN PYVHVTSSSI PLNETTDLSF ENSTTRP00000007361/1-1047 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18324T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU015716/1-1052 LGTNFFLCED DVVSMRNRAE AVLQHIAELN PYVHVTSSSI PLNETTDLSF 151 200 ENSP00000313454/1-1052 LDKYQCVVLT EMKLPLQKKI NDFCRSQCPP IKFISADVHG IWSRLFCDFG ENSBTAP00000008985/1-1057 LDKYQCVVLT EMKLSVQKKI NDFCRSQCPP IKFISADVHG IWSRLFCDFG ENSTTRP00000007361/1-1047 XXXXXCVVLT EIKLSLQKKI NDFCRSQCPP VKFISADIHG IWSRLFCDFG bmy_18324T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU015716/1-1052 LDKYQCVVLT EIKLSLQKKI NDFCRSQCPP IKFISADIHG IWSRLFCDFG 201 250 ENSP00000313454/1-1052 DEFEVLDTTG EEPKEIFISN ITQANPGIVT CLENHPHKLE TGQFLTFREI ENSBTAP00000008985/1-1057 DEFEVLDTTG EEPKEIFISD ITQANPGIVT CLENHPHKLE TGQFLTFREI ENSTTRP00000007361/1-1047 DEFEVLDTTG EEPKEIFISN IT-ANPGIVT CLENHPHKLE TGQFLTFREI bmy_18324T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU015716/1-1052 DEFEVLDTTG EEPKEIFISN ITQANPGIVT CLENRPHKLE TGQFLTFREI 251 300 ENSP00000313454/1-1052 NGMTGLNGSI QQITVISPFS FSIGDTTELE PYLHGGIAVQ VKTPKTVFFE ENSBTAP00000008985/1-1057 NGMTGLNGST QQITVVSPFS FSIGDTTELE PYLHGGIAIQ VKTSKTFCFE ENSTTRP00000007361/1-1047 NGMTGLNGST QQITVVSPFS FSIGDTRELE -YLHGEIAVQ VKTHKTFCFE bmy_18324T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU015716/1-1052 NGMTGLNGCT QQITVVSPFS FSIGDTRELE PYLHGGIAVQ VKTPKTFCFE 301 350 ENSP00000313454/1-1052 SLERQLKHPK CLIVDFSNPE APLEIHTAML ALDQFQEKYS RKPNVGCQQD ENSBTAP00000008985/1-1057 SLEMQLKHPK YLIVDFSKPE APLEIHLAML ALDQFQENYS RKPNIGCQQD ENSTTRP00000007361/1-1047 PLEKQIKHPK CLIADFSKPE APLEIHSAML ALDQFQENYS RKPNTGCQQD bmy_18324T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU015716/1-1052 PLEKQIKHPK CLIADFSKPE APLEIHSAML ALDQFQENYS RKPNIGCQQD 351 400 ENSP00000313454/1-1052 SEELLKLATS ISETLEEKPD VNADIVHWLS WTAQGFLSPL AAAVGGVASQ ENSBTAP00000008985/1-1057 SEELLKLATS ISETLEEKPE VNYDIVRWLS WTAQGFLPPL AAAVGGVASQ ENSTTRP00000007361/1-1047 SEELLKLATS ISETLEEQPE VNYDIVRWLS WTAQGFLPPL AAAVGGVASQ bmy_18324T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU015716/1-1052 SEELLKLATS ISETLEEQPE VNYDIVRWLS WTAQGFLPPL AAAVGGVASQ 401 450 ENSP00000313454/1-1052 EVLKAVTGKF SPLCQWLYLE AADIVESLGK PECEEFLPRG DRYDALRACI ENSBTAP00000008985/1-1057 EVLKAVTGKF SPLCQWLYIE AADLVESLSK PERQEFLPRG DRYDALRACI ENSTTRP00000007361/1-1047 EVLKAVTGKF SPLCQWLYIE AADIVESLGK PEREEFLPRG DRYDALRACI bmy_18324T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU015716/1-1052 EVLKAVTGKF SPLCQWLYIE AADIVESLGK PEREEFLPRG DRYDALRACI 451 500 ENSP00000313454/1-1052 GDTLCQKLQN LNIFLVGCGA IGCEMLKNFA LLGVGTSKEK GMITVTDPDL ENSBTAP00000008985/1-1057 GDTLCQKLQN LNIFLVGCGA IGCEMLKNFA LLGVGTGKQK GMVTVTDPDL ENSTTRP00000007361/1-1047 GDTLCRKLQN LNIFLXXXXX XXX-XXXXXX XXXXXXXXXX XXXTVTDPDL bmy_18324T0/1-533 ---------- ---------- ----MLKNFA LLGVGTGKEK GMVTVTDPDL BACU015716/1-1052 GDTLCRKLQN LNIFLVGCGA IGCEMLKNFA LLGVGTGKEK GMVTVTDPDL 501 550 ENSP00000313454/1-1052 IEKSNLNRQF LFRPHHIQKP KSYTAADATL KINSQIKIDA HLNKVCPTTE ENSBTAP00000008985/1-1057 IEKSNLNRQF LFRPHHIQKP KSCTAADATL KINPQLKIDA HLNKVCSATE ENSTTRP00000007361/1-1047 IEKSNLNRQF LFRPHHIQKP KSYTAADATL KINPQLKIDA HLNKVCPATE bmy_18324T0/1-533 IEKSNLNRQF LFRPHHIQKP KSYTAADATL KINPQLKIDA HLNKVCPATE BACU015716/1-1052 IEKSNLNRQF LFRPHHIQKP KSYTAADATL KINPQLKIDA HLNKVCPATE 551 600 ENSP00000313454/1-1052 TIYNDEFYTK QDVIITALDN VEARRYVDSR CLANLRPLLD SGTMGTKGHT ENSBTAP00000008985/1-1057 AIYNDEFYTK QDIIITALDN VEARRYVDSR CLANLRPLLD SGTMGTKGHT ENSTTRP00000007361/1-1047 VIYNDEFYTK QDIIITALDN VEARRYVDSR CLANLRPLLD SGTMGTKGHT bmy_18324T0/1-533 VIYNDEFYTK QDIIITALDN VEARRYVDSR CLANLRPLLD SGTMGTKGHT BACU015716/1-1052 VIYNDEFYTK QDIIITALDN VEARRYVDSR CLANLRPLLD SGTMGTKGHT 601 650 ENSP00000313454/1-1052 EVIVPHLTES YNSHRDPPEE EIPFCTLKSF PAAIEHTIQW ARDKFESSFS ENSBTAP00000008985/1-1057 EVIVPHLTES YNSHRDPPEE EIPFCTLKSF PAAIEHTIQW ARDKFESSFS ENSTTRP00000007361/1-1047 EVIVPHLTES YNSHRDPPEE EIPFCTLKSF PAAIEHTIQW ARDKFESSFS bmy_18324T0/1-533 EVIVPHLTES YNSHRDPPEE EIPFCTLKSF PAAIEHTIQW ARDK------ BACU015716/1-1052 EVIVPHLTES YNSHRDPPEE EIPFCTLKSF PAAIEHTIQW ARDKFESSFS 651 700 ENSP00000313454/1-1052 HKPSLFNKFW QTYSSAEEVL QKIQSGHSLE GCFQVIKLLS RRPRNWSQCV ENSBTAP00000008985/1-1057 QKPSLFNKFW QTYPSAEEVL QKIQTGHSLE GCFQVIKLLS RRPRNWSQCV ENSTTRP00000007361/1-1047 YKPSLFNKFW QTYPSAEEVL KKIQTGQSLE GCFQVIKLLS RRPRNWSHCV bmy_18324T0/1-533 ---------- ---------- -KIQTGHSLE GCFQVIKLLS KRPRNWSHCV BACU015716/1-1052 YKPSLFNKFW QTYPSAEVVL KKIQTGHSLE GCFQVIKLLS KRPRNWSHCV 701 750 ENSP00000313454/1-1052 ELARLKFEKY FNHK------ ALQLLHCFPL DIRLKDGSLF WQSPKRPPSP ENSBTAP00000008985/1-1057 ELARLKFEKY FNHK------ ALQLLHCFPL DTRLKDGSLF WQSPKRPPSP ENSTTRP00000007361/1-1047 ELARLKFEKY FNHK------ ALQLLHCFPL DTRLKDGSLF WQSPKRPPSP bmy_18324T0/1-533 ELARLKFEKY FNHKEAFQKL ALQLLHCFPL DTRLKDGSLF WQSPKRPPSP BACU015716/1-1052 ELARLKFEKY FNHK------ ALQLLHCFPL DTRLKDGSLF WQSPKRPPSP 751 800 ENSP00000313454/1-1052 IKFDLNEPLH LSFLQNAAKL YATVYCIPFA EEDLSADALL NILSEVKIQE ENSBTAP00000008985/1-1057 LKFDLNEPLH FSFLLNAAKL YATIYCIPFT EEDLSADTLL NILSEVKIQE ENSTTRP00000007361/1-1047 LKFDLNEPLH FSFLLNAAKL YATVYCIPFT EEDLSADTLL NILSEVKIQE bmy_18324T0/1-533 LKFDLNEPLH FSFLLNAAKL YATVYCIPFT EE-------- ---------- BACU015716/1-1052 LKFDLNEPLH FSFLLNAAKL YATVYCIPFT EEDLSADTLL NILSEVKIQE 801 850 ENSP00000313454/1-1052 FKPSNKVVQT DETARKPDHV PISSEDERNA IFQLEKAILS NEATKSDLQM ENSBTAP00000008985/1-1057 FKPSDKVVQT DETARKPDQV PVSSEDERNA IFQLEKAIAS NEATTSDLQM ENSTTRP00000007361/1-1047 FRPSNKVVQT DETARKPDHV PVSSEDERNA VFQLEKAISS SEATTSDLQM bmy_18324T0/1-533 ------VVQT DETARKPDHV PVSSEDERNA VFQLQKAISS SEATASDLQM BACU015716/1-1052 FKPSNKVVQT DETARKPDHV PVSSEDERNA VFQLEKAISS SEATASDLQM 851 900 ENSP00000313454/1-1052 AVLSFEKDDD HNGHIDFITA ASNLRAKMYS IEPADRFKTK RIAGKIIPAI ENSBTAP00000008985/1-1057 AVLSFEKDDD HNGHIDFITA ASNLRAKMYS IEPADRLKTK RIAGRIIPAI ENSTTRP00000007361/1-1047 AVLSFEKDDD RNGHIDFITA ASNLRAK-YS IEPADRLKTK RIAGRIIPAI bmy_18324T0/1-533 AALSFEKDDD RNGHIDFITA ASNLRAKMYN IEPADRLKTK RIAGRIIPAI BACU015716/1-1052 AALSFEKDDD RNGHIDFITA ASNLRAKMYN IEPADRLKTK RIAGRIIPAI 901 950 ENSP00000313454/1-1052 ATTTATVSGL VALEMIKVTG GYPFEAYKNC FLNLAIPIVV FTETTEVRKT ENSBTAP00000008985/1-1057 ATSTAAVSGL VALEMIKVAG DYPFEAYKNC FLNLAIPIIV FTETSEVRKT ENSTTRP00000007361/1-1047 ATSTAAVTGL VALEMIKVAG DYPFEAYKNC FFNLAIPIIV FTETSEVRKT bmy_18324T0/1-533 ATSTAAVSGL VALEMIKVAG DYPFEAYKNC FFNLAIPIIV FTETSEVRKT BACU015716/1-1052 ATSTAAVSGL VALEMIKVAG DYPFEAYKNC FFNLAIPIIV FTETSEVRKT 951 1000 ENSP00000313454/1-1052 KIRNGISFTI WDRWTVHGKE DFTLLDFINA VKEKYGIEPT MVVQGVKMLY ENSBTAP00000008985/1-1057 EIRNGISFTI WDRWTIHGKE DFTLLDFINA VKEKYGIEPT MVVQGVKMLY ENSTTRP00000007361/1-1047 EIRNGISFTI WDRWIIHGKE EFTLLDFINA VKEKYGIEPT MVVQGVKMLY bmy_18324T0/1-533 EIRNGISFTI WDRWIIHGKE EFTLLDFINA VKEKYGIEPT MVVQGVKMLY BACU015716/1-1052 EIRNGISFTI WDRWIIHGKE EFTLLDFINA VKEKYGIEPT MVVQGVKMLY 1001 1050 ENSP00000313454/1-1052 VPVMPGHAKR LKLTMHKLVK PTTEKKYVDL TVSFAPDIDG DEDLPGPPVR ENSBTAP00000008985/1-1057 VPIVPGHAKR LKLTMHKLVK PSAEKRYVDL TVSFAPDVDG DEDLPGPPVR ENSTTRP00000007361/1-1047 VPVMPGHAKR LKLTMHKLVK PSTEKKYVDL TVSFAPDTDG DEDLPGPPVR bmy_18324T0/1-533 VPVMPGHAKR LKLTMHKLVK PSTEKKYVDL TVSFAPDTDG DEDLPGPPVR BACU015716/1-1052 VPVMPGHAKR LKLTMHKLVK PSTEKKYVDL TVSFAPDTDG DEDLPGPPVR 1051 1100 ENSP00000313454/1-1052 YYFSHDTD-- --- ENSBTAP00000008985/1-1057 YYFSHDTDEQ KLS ENSTTRP00000007361/1-1047 YYFSHDTD-- --- bmy_18324T0/1-533 YYFSHDTD-- --- BACU015716/1-1052 YYFSHDTD-- ---