KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:58 2014 Check: 00 .. Name: ENSP00000331907/1-1143 Len: 1191 Check: 3144 Weight: 1.00 Name: ENSBTAP00000008999/1-1146 Len: 1191 Check: 5528 Weight: 1.00 Name: ENSTTRP00000002124/1-1139 Len: 1191 Check: 7593 Weight: 1.00 Name: bmy_06603T0/1-1111 Len: 1191 Check: 5483 Weight: 1.00 Name: BACU002152/1-1077 Len: 1191 Check: 9827 Weight: 1.00 // 1 50 ENSP00000331907/1-1143 ---------- ---------- ---------- --------MP PPRTREGRDR ENSBTAP00000008999/1-1146 ---------- ---------- ---------- --------MP PPRTREGRGP ENSTTRP00000002124/1-1139 ---------- ---------- ---------- --------MP PPRTWEGRGP bmy_06603T0/1-1111 GAGLGCEDGV RRRRTGFGRV RDPADRKLRR SRRLTSHGMP PPRTREGRGP BACU002152/1-1077 ---------- ---------- ---------- --------MP PPRTREGRGP 51 100 ENSP00000331907/1-1143 RDHHRAPSEE EALEKWDWNC PETRRLLEDA FFREEDYIRQ GSEECQKFWT ENSBTAP00000008999/1-1146 WDRPRAPSPE AAPEKWNWNC PETRRLFEDA FFGDEDYIRQ GSEECQKFWT ENSTTRP00000002124/1-1139 RDRPPAPSQE EDPEKWDWNC PETRRLFEDA FFGDEDYIRQ GSEECQKFWT bmy_06603T0/1-1111 RDRPPAPXQE EDPEKWDWNC PETRRLFEDA FFGDEDYIRQ GSEECQKFWT BACU002152/1-1077 RDRSPAPHQE EDPEKWDWNC PETRRLFEDA FFGDEDYIRQ GSEECQKFWT 101 150 ENSP00000331907/1-1143 FFERLQRFQN LKTSRKEEKD PGQPKHSIPA LADLPRTYDP RYRINLSVLG ENSBTAP00000008999/1-1146 FFERLQRFQN LKTTRKEEKD ARQPKHSHPA LADLPRAYDP RYRINLSVLG ENSTTRP00000002124/1-1139 FFERLQRFQN LKTTRKEEKD SRHPKHSIPA LADLPRAYDP RYRINLSVLG bmy_06603T0/1-1111 FFERLQRFQN LKTASKEEKD SRHPKHSIPA LADLPRAYDP RYRINLSVLG BACU002152/1-1077 FFERLQRFQN LKTTSKEEKD SRHPKHSIPA LADLPRAYDP RYRINLSVLG 151 200 ENSP00000331907/1-1143 PATRGSQGLG RHLPAERVAE FRRALLHYLD FGQKQAFGRL AKLQRERAAL ENSBTAP00000008999/1-1146 PDARDSRGPG RRLPPERASE FRQALLHYLD FCQKQAFGRL AKLQRERAAL ENSTTRP00000002124/1-1139 PDARRSRGLG RRLAPERVSE FRQALLHYLD FGQKQAFGRL AKLQRERMAL bmy_06603T0/1-1111 PDTRRSRGLG RRLAPERVSE FRQALLHYLD FGQKQAFGRL AKLQRERVAL BACU002152/1-1077 PDTRRSRGLG RRLAPERVSE FRQALLHYLD FGQKQAFGRL AKLQRERVAL 201 250 ENSP00000331907/1-1143 PIAQYGNRIL QTLKEHQVVV VAGDTGCGKS TQVPQYLLAA GFSHVACTQP ENSBTAP00000008999/1-1146 PIAQYGHHIL QMLKEHQVVV VAGDTGCGKS TQVPQYLLAA GCSHVACTQP ENSTTRP00000002124/1-1139 PIAQYGDRIL QTLKEHQVVV VAGDTGCGKS TQVPQYLLAA GFSHVACTQP bmy_06603T0/1-1111 PIAQYADRIL QTLKEHQVLV VAGDTGCGKS TQVPQYLLAA GFSHVACTQP BACU002152/1-1077 PIAQYGDHIL QTLKEHQVVV VAGDTGCGKS TQVPQYLLAA GFSHVACTQP 251 300 ENSP00000331907/1-1143 RRIACISLAK RVGFESLSQY GSQVGYQIRF ESTRSAATKI VFLTVGLLLR ENSBTAP00000008999/1-1146 RRIACISLAK RVGFESLSQY GSQVGYQIRF ESTRSAATKI VFLTVGLLLR ENSTTRP00000002124/1-1139 RRIACISLAK RVGFESLSQY GSQVGYQIRF ESTRSAATKI VFLTVGLLLR bmy_06603T0/1-1111 RRIACISLAK RVGFESLSQY GSQVGYQIRF ESTRSAATKI VFLTVGLLLR BACU002152/1-1077 RRIACISLAK RVGFESLTQY GSQVGYQIRF ESTRSAATKI VFLTVGLLLR 301 350 ENSP00000331907/1-1143 QIQREPSLPQ YEVLIVDEVH ERHLHNDFLL GVLQRLLPTR PDLKVILMSA ENSBTAP00000008999/1-1146 QMQREPSLPQ YQVLIVDEVH ERHLHNDFLL GVLQRLLPQR PDLKVVLMSA ENSTTRP00000002124/1-1139 QIQREPRLPQ YQVLIVDEVH ERHLHNDFLL GILRRLLP-R PDLRVILMSA bmy_06603T0/1-1111 QIQREPSLPQ YQVLIVDEVH ERHLHNDFLL GILRRLLPQR PDLKVILMSA BACU002152/1-1077 QIQREPSLPQ YQVLIVDEVH ERHLHNDFLL GILRRLLPQR PDLKVILMSA 351 400 ENSP00000331907/1-1143 TINISLFSSY FSNAPVVQVP GRLFPITVVY QPQEAEPTTS KSEKLDPRPF ENSBTAP00000008999/1-1146 TINISLFSSY FGNAPVVQVP GRLFPITVVY QPQEAEPTTS KSEKLDPRPF ENSTTRP00000002124/1-1139 TINISLFSSY FGMPLVXXXX XXXXXXXVVY QPQEAEPTTS KSEKLDPRPF bmy_06603T0/1-1111 TINISLFSSY FGNAPVVQVP GRLFPITVVY QPQEAEPTTS KSEKLDPRPF BACU002152/1-1077 TINISLFSSY FGNAPVVQ-- -------VVY QPQEAEPTTS KSEKLDPRPF 401 450 ENSP00000331907/1-1143 LRVLESIDHK YPPEERGDLL VFLSGMAEIS AVLEAAQTYA SHTQRWVVLP ENSBTAP00000008999/1-1146 LRVLEAIDNK YPPEERGDLL VFLSGMAEIS AVLEPAQAYA SHTQRWVVLP ENSTTRP00000002124/1-1139 LRVLEAIDNK YPPEERGDLL VFLSGMAEIS AVLEAAQTYA SHTQRWAVLP bmy_06603T0/1-1111 LRVLEAIDNK YPPEERGDLL VFLSGMAEIS AVLEAAQTYA SHTQRWAVLP BACU002152/1-1077 LRVLEAIDNK YPPEERGDLL VFLSGMAEIS AVLEAAQTYA SHTQRWAVLP 451 500 ENSP00000331907/1-1143 LHSALSVADQ DKVFDVAPPG VRKCILSTNI AETSVTIDGI RFVVDSGKVK ENSBTAP00000008999/1-1146 LHSALSVADQ DKVFDVAPPG VRKCILSTNI AETSVTIDGI RFVVDSGKVK ENSTTRP00000002124/1-1139 LHSALSVADQ DKVFDVAPPG VRKCILSTNI AETSVTIDGI RFVVDSGKVK bmy_06603T0/1-1111 LHSALSVADQ D--------- --KCILSTNI AETSVTIDGI RFVVDSGKVK BACU002152/1-1077 LHSALSVADQ DKVFDMAPPG VRKCILSTNI AETSVTIDGI RFVVDSGKVK 501 550 ENSP00000331907/1-1143 EMSYDPQAKL QRLQEFWISQ ASAEQRKGRA GRTGPGVCFR LYAESDYDAF ENSBTAP00000008999/1-1146 EMSYDPQAKL QRLQEFWISQ ASAEQRKGRA GRTGPGVCFR LYAESDYDAF ENSTTRP00000002124/1-1139 EMSYDP-AKL QRLHEFWIS- ASAEQR-GRA GRTGP-VC-R LYAESDYDAF bmy_06603T0/1-1111 EMSYDPQAKL QRLQEFWISQ ASAEQRKGRA GRTGPGVCFR LYAESDYDAF BACU002152/1-1077 EMSYDPQAKL QRLQEFWISQ ASAEQRKGRA GRTGPGVCFR LYAESDYDAF 551 600 ENSP00000331907/1-1143 APYPVPEIRR VALDSLVLQM KSMSVGDPRT FPFIEPPPPA SLETAILYLR ENSBTAP00000008999/1-1146 APYPVPEIRR VALDALVLQM KSMSVGDPRT FPFIEPPPPT SLETAILYLR ENSTTRP00000002124/1-1139 APYPVXXXXX XXXXXXXXXM KGMSVGDPRT FPFIEPPPPT SLETAICYLR bmy_06603T0/1-1111 APYPVPEIRR VALDALVLQM KGMSVGDPRT FPFIEPPPPT SLETAILYLR BACU002152/1-1077 APYPVPEIWR VALDALVLQM KSMSVGDPRT FPFIEPPPPT SLETAILYLR 601 650 ENSP00000331907/1-1143 DQGALDSSEA LTPIGSLLAQ LPVDVVIGKM LILGSMFSLV EPVLTIAAAL ENSBTAP00000008999/1-1146 DQGALDSSEA LTPIGSLLAQ LPVDVVIGKM LILGSMFHLA EPVLTIAAAL ENSTTRP00000002124/1-1139 DQGALDSSEA LTPIGSLLAQ LPVDVVIGKM LILGSMFHLA EPVLTIAAAL bmy_06603T0/1-1111 DQGALDSSEA LTPIGSLLAQ LPVDVVIGKM LILGSMFHLA EPVLTIAAAL BACU002152/1-1077 DQGALDSSEA LTPIGSLLAQ LPVDVVIGKM LILGSMFHLA EPVLTIAAAL 651 700 ENSP00000331907/1-1143 SVQSPFTRSA QSSPECAAAR RPLESDQGDP FTLF--NVFN AWVQVKSERS ENSBTAP00000008999/1-1146 SVQTPFTRSA QSNPECAATR RPLESDQGDP FTLL--NVFN TWVQVKSERG ENSTTRP00000002124/1-1139 SVQSPFTRGA QSNPECVAAR RPLESDQGDP FTLFNENXXX XXXXVKSERS bmy_06603T0/1-1111 SVQSPFTRGA QSNPECVAAR RPLESDQGDP FTLF--NVFN TWVQVKSERS BACU002152/1-1077 SVQSPFTRGA QSNPECVAAR RPLESDQGDP FTLF--NVFN TWVQVKSERS 701 750 ENSP00000331907/1-1143 RNSRKWCRRR GIEEHRLYEM ANLRRQFKEL LEDHGLLAGA QAAQVGDSYS ENSBTAP00000008999/1-1146 RNSRKWCRHR GIEEHRLYEM ANLRRQFKEL LEDHGLLAGA QAPQPGDSYS ENSTTRP00000002124/1-1139 RNSRRWCRHR GIEEHRLYEM A-LRRQFKEL LEDHGLLARA QASKPGDSYS bmy_06603T0/1-1111 RNSRRWCRHR GIEEHRLYEM ANLRRQFKEL LEDHGLLARA QASKPGDSYS BACU002152/1-1077 RNSRRWCRHR GIEEHRLYEM ANLRRQFKEL LEDHGLLARA QASKPGDSYS 751 800 ENSP00000331907/1-1143 RLQQRRERRA LHQLKRQHEE GAGRRRKVLR LQEEQDGGSS DEDRAGPAPP ENSBTAP00000008999/1-1146 RLQRRRERQA LYELKRRHEE GVGRKRKVLR VQDDQDGWSS DEDRGGSASR ENSTTRP00000002124/1-1139 RLRQRRERQA LYQLKRQHEQ GQGRRRKVLR LQEDQDGCSS DEDRGGAASQ bmy_06603T0/1-1111 RLRQRRERQA LYQLKRQHEE GQGRRRKVLR LQEDQDGGSS DEDRGGTASQ BACU002152/1-1077 RLRQRRERQA LYQLKRQHEE GQGRRRKVLR LPEDQDGGSS DEDRRGAASQ 801 850 ENSP00000331907/1-1143 GASDGVDIQD VKFKLRHDLA QLQAAASSAQ DLSREQLALL KLVLGRGLYP ENSBTAP00000008999/1-1146 GAGDSVDIQD VKFKLRHNLE QLHAAASSAQ ALTRDQMALL KLVLGRGLYP ENSTTRP00000002124/1-1139 GGGDNVDIQD VKFKLRHNLE QLQAAASSAQ ALTRDQMALL KLVLGRGLYP bmy_06603T0/1-1111 GAGDNVDIQD VKFKLRHNLE QLQAAAGAAQ ALTRDQMALL KLVLGRGLYP BACU002152/1-1077 GAGDNVDIQD VKFKLRHNLE QLQAAASSAQ ALTRDQMALL KLVLGRGLYP 851 900 ENSP00000331907/1-1143 QLAVPDAFNS SRKDSDQIFH TQAKQGAVLH PTCVFAGSPE VLHAQELEAS ENSBTAP00000008999/1-1146 QLAVPDPFNS SRKDSDQIFH TQTKQGVVLH PTCVFTNSPE VLHAQEQAAR ENSTTRP00000002124/1-1139 QLAIPDPFNS GRKDSDQIFH TKTKQGAVLH PTCIFANSP- VLHTQEQEAR bmy_06603T0/1-1111 QLAIPDPFNS GRKDSDQ--- ----QGAVLH PTCIFANSPE VLHTQEQEAR BACU002152/1-1077 QLAIPDPFNS GRKDSDQIFH TETKQGAVLH PTCIFANSPE VLHTQEQEAR 901 950 ENSP00000331907/1-1143 NCDGSR---- -DDKDKMSSK HQLLSFVSLL ETNKPYLVNC VRIPALQSLL ENSBTAP00000008999/1-1146 GSDGSR---- -DDRDKMSSK HQLVTFVSLL ETNKPYLVNC VRIPALQSLL ENSTTRP00000002124/1-1139 GSDGSR---- -DDKDKMSSR HQLLAFVSLL ETNKPYLVNC VRIPALQSLL bmy_06603T0/1-1111 GGDGSRGTVS PDDKDKMSSK HQLLTFVSLL ETNKPYLVNC VRIPALQSLL BACU002152/1-1077 GGDGSR---- -DDKDKMSSK HQLLTFVSLL ETNKPYLVNC VRIPALQSLL 951 1000 ENSP00000331907/1-1143 LFSRSLDTNG DCSRLVADGW LELQLADSES AIRLLAASLR LRARWESALD ENSBTAP00000008999/1-1146 LFSRSLDTNG DCSRLVADGW LELQLADTES AVRLLAASLR LRAHWESALD ENSTTRP00000002124/1-1139 LFSRSLDTNG DCCRLVADGW LELQLVDSES AVRLLAASLR LRAHWESALD bmy_06603T0/1-1111 LFSRSLDTSG DCCRLVADGW LELQLADGES AVRLLAASLR LRAHWESALD BACU002152/1-1077 LFSRSLDTNG DCCRLVADGW LELQLADSES AVRLLAASLR LRAHWESVLD 1001 1050 ENSP00000331907/1-1143 RQLAHQAQQQ LEE---EEED TPVSPKEVAT LSKELLQFTA SKIPYSLRRL ENSBTAP00000008999/1-1146 RQLAHQARRR LEDEEEEEEE APVNHKEVAA LSRELLQFMT SKVSYSLRRL ENSTTRP00000002124/1-1139 RQLAHQARWR MED-KDDEET DPVNRKEVAA LSRELLQFTA SKVSYSLRRL bmy_06603T0/1-1111 RQLAHQARWR LED-RDEEEE APVNRKEVAA LSRELLQFTA SK-------- BACU002152/1-1077 RQLAHQARWR LED-RDEEEE APVNRKEVAA LSRELLQFTA SK-------- 1051 1100 ENSP00000331907/1-1143 TGLEVQNMYV GPQTIPATPH LPGLFGSSTL SPHPTKGGYA VTDFLTYNCL ENSBTAP00000008999/1-1146 TGLEAQNLYV GPQTITAAPS LPGLFGNSTP SPHPTKGGYA VTDFLTYNCL ENSTTRP00000002124/1-1139 TGLEIQNLYV GPQTITAAPS LPGLFGCSTP SPHPTKGGYA VTDFLTYSCL bmy_06603T0/1-1111 ---------- ---------- ---------- ---------- ---------- BACU002152/1-1077 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000331907/1-1143 TNDTDLYSDC LRTFWTCPHC GLHAPLTPLE RIAHENTCPQ APQDGPPGAE ENSBTAP00000008999/1-1146 TSDADLYSDC LRTFWTCPHC GLHMPLTPLE RIAHENTCPE APQGGPPGAE ENSTTRP00000002124/1-1139 TSDADLYSDC LRTFWTCPHC DLHMPFTPLE RIAHESTCPE APQDGPPGAE bmy_06603T0/1-1111 -SDADLYSDC LRTFWTCPHC DLHMPFTPLE RIAHENTCPE APQDGSPGAE BACU002152/1-1077 -SDADLYSDC LRTFWTCPHC DLHMPFTPLE RIAHENTCPK APQDGPPGAE 1151 1200 ENSP00000331907/1-1143 EAALETLQKT SVLQRPYHCE ACGKDFLFTP TEVLRHRKQH V ENSBTAP00000008999/1-1146 EAAPEPPQKA SALQKPYHCE ACQKDFLFTP TEILRHRRQH V ENSTTRP00000002124/1-1139 EAAPEPLQKA SALQRPYHCE ACQKDFLFTP TEVLRHRRQH V bmy_06603T0/1-1111 EAAPEPLQKA SALQRPYHCE ACQKDFLFTP TEVLRHRRQH V BACU002152/1-1077 EAAPEPLQKA SALQRPYHCE ACQKDFLFTP TEVLRHRRQH V