KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:00 2014 Check: 00 .. Name: ENSP00000251864/1-1189 Len: 1251 Check: 2472 Weight: 1.00 Name: ENSBTAP00000009002/1-1184 Len: 1251 Check: 6408 Weight: 1.00 Name: ENSTTRP00000009633/1-1189 Len: 1251 Check: 861 Weight: 1.00 Name: bmy_03055T0/1-1148 Len: 1251 Check: 5408 Weight: 1.00 Name: BACU004668/1-438 Len: 1251 Check: 95 Weight: 1.00 // 1 50 ENSP00000251864/1-1189 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009002/1-1184 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009633/1-1189 ---------- ---------- ---------- ---------- ---------- bmy_03055T0/1-1148 MQTAQARAAA GERAGRPERG KRRERTWLPG SRTRAGVTTA RLQRLVGVSG BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000251864/1-1189 --------MS VKSPFNVMSR NNLEAPPCKM TEPFNFEKNE NKLPPHESLR ENSBTAP00000009002/1-1184 --------VN VKLLLNMMSR NILAASTCKM TEPFNFEKNE SKLPSHESLR ENSTTRP00000009633/1-1189 --------VN VKLPLNMMSR SNLEASSCKM TEPFNFEKNE SKLPPHESLR bmy_03055T0/1-1148 PFASFQTSVN VKLPLNMMSR NNLEASSCKM TEPFNFEKNE TKLPPHESLR BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000251864/1-1189 SPGTLPNHPN FRLKSSENGN KKNNFLLCEQ TKQYLASQED NSVSSNPNGI ENSBTAP00000009002/1-1184 SPGGHPNHPN FRLKSPENGN KKNNFLLCEQ TKQFLASQED SSLSSHPNGV ENSTTRP00000009633/1-1189 SAGGHPNHPN FRLKSPENGN KKKNFLLCEQ TKQYLASQED NSESSNSNGI bmy_03055T0/1-1148 SPGGHPNHPN FRLKSPENGN KNKNFLLCEQ TKQYLASQED NSVSSNSNGI BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000251864/1-1189 NGEVVGSKGD RKKLPAGNSV SPPSAESNSP PKEVNIKPGN NVRPAKSKKL ENSBTAP00000009002/1-1184 NGEMAGSKED RKTLPTGNAV SPLNVGNNSP PKEVNSKPSN HVPPAKSKKV ENSTTRP00000009633/1-1189 SGEVAGSKGD RTMLPTGNSV SPLNVGNNSP PKEVNSKTSN NVSPAKSKKV bmy_03055T0/1-1148 SGEVAGSNGD RKMLPAGNSV SPLNVGNNSP PKEVNSKTSN NVSPAKSKKV BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000251864/1-1189 NKLVENSLSI SNPGLFTSLG PPLRSTTCHR CGLFGSLRCS QCKQTYYCST ENSBTAP00000009002/1-1184 HKLVENSLSI NNPALFNSLG PPLRSTTCHR CGLFGSLRCS QCKQTYYCSN ENSTTRP00000009633/1-1189 HKLVESSLSI NDPALFSSLG PPLRSTTCHC CGLFGPLRCS QCKQTYYCSV bmy_03055T0/1-1148 HKLVESSLSI NNPALFSSLG PPLRSTTCHC CGLFGSLRCS QCKQTYYCSA BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000251864/1-1189 ACQRRDWSAH SIVCRPVQPN FHKLE-NKSS IETKDVEVNN KSDCPLGVTK ENSBTAP00000009002/1-1184 ICQRRDWAAH KIVCKPVQQN FHKLEDYKSP FETKNMEVKD ESDSPLRVIK ENSTTRP00000009633/1-1189 ACQRRDWAAH SIVCKPVQQN FHKLEDNKSP FETKNMEVKK ESDCPVGVTK bmy_03055T0/1-1148 ACQRRDWAAH SIVCRPVQQN FHKLEDNKSP FETKNMEVKK ESDCPLGVIK BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000251864/1-1189 EIAIWAERIM FSDLRSLQLK KTMEIKGTVT EFKHPGDFYV QLYSSEVLEY ENSBTAP00000009002/1-1184 ERAICADKIM FSDLRSLQLR KTMEIKGTVT EFKHPGDFYV QLYSSEVLEC ENSTTRP00000009633/1-1189 EIATCADKIM FSDLRSLQLR KSMEIKGIVT EFKHPGDFYV QLHSSEVLEY bmy_03055T0/1-1148 EIAVCADKIM FSDLRNLQLR NTMEIKGTVT EFKHPGDFYV QLHSSEVLEY BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000251864/1-1189 MNQLSASLKE TYAN-VHEKD YIPVKGEVCI AKYTVDQTWN RAIIQNVDVQ ENSBTAP00000009002/1-1184 MNQLSASLKE TYANKAHEED HVPVKGEICV AKYTVDQTWN RVIIQDVDLL ENSTTRP00000009633/1-1189 MNQLSASLKE TYANKAHEED YIPVKGEVCV AKYTVDQTWN RVIIQDVDVL bmy_03055T0/1-1148 VNQLSASLKE TYANKAHEED YIPVKGEVCV AKYTVDQTWN RVIIQDVDVL BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000251864/1-1189 QKKAHVLYID YGNEEIIPLN RIYHLNRNID LFPPCAIKCF VANVIPAEGN ENSBTAP00000009002/1-1184 QKVAQVLYID YGNEEVIPIN RIHQLNRKID LFPPCAIRCS VASVIPAEGN ENSTTRP00000009633/1-1189 QKKAQVLYID YGNEEIIPVN RIHQLNRKID LFPPCAIKCF VANVIPAEGN bmy_03055T0/1-1148 QKKAQVLYID YGNEEIIPVN RIHQLNRKID LFPPCAIKCF VANVIPAEGN BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000251864/1-1189 WSSDCIKATK PLLMEQYCSI KIVDILEEEV -VTFAVEVEL PNSGKLLDHV ENSBTAP00000009002/1-1184 WSSDCIKTIK LLLMEQYCSL KIVDIVKEEE GVTFAVDVMM TSSGKFLDHV ENSTTRP00000009633/1-1189 WSNDCIKTIK SLLMQQYCSL KIVDILK-EV -ISFAVDVML TSSGKFLDHV bmy_03055T0/1-1148 WSDDCIKTIK SLLMEQYCSV KIVDILKEEV -VSFAVDVML TSSGKFLDHV BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000251864/1-1189 LIEMGYGLKP SGQDSKKENA DQSDPEDVGK MTTENNIVVD KSDLIPKVLT ENSBTAP00000009002/1-1184 LIEMGYGLKP KGQNSKKQST DSSDLKDVRK MMAENKIVVD RSDLIPKVLT ENSTTRP00000009633/1-1189 LIEMGYGLKP KGQNSKKPSV DSSDLEDVRK ITAENKIVID RSGLIPKVLT bmy_03055T0/1-1148 LIEMGYGLKP KGQNSKKQSA DSSDLEDVRK IIAENKIVVD RRDLIPKVLT BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000251864/1-1189 LNVGDEFCGV VAHIQTPEDF FCQQLQSGRK LAELQASLSK YCDQLPPRSD ENSBTAP00000009002/1-1184 LNVGDEFCGV VAHVQTPEDF FCQQLQSGRK LAELQRSLGE YCSQVPPRSD ENSTTRP00000009633/1-1189 LNVGDEFCGV VAHIQTPEDF FCQRLQSGHK LAELQASLTT YCSQVSPRSD bmy_03055T0/1-1148 LNVGDEFCGV VAHIQTPEDF FCQQLQSGHK LAELQASLSE YCSQVSPRSD BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000251864/1-1189 FYPAIGDICC AQFSEDDQWY RASVLAYASE ESVLVGYVDY GNFEILSLMR ENSBTAP00000009002/1-1184 FYPTIGDICC AQFSEDDQWY RASVLAYASE ESVLVGYVDY GNFEILSLTR ENSTTRP00000009633/1-1189 FYPTIGDICC AQFSEDDQWY RASVLAYASE ESVLVGYVDY GNFEILSLTR bmy_03055T0/1-1148 FYPTIGDICC AQFSEDDQWY RASVLAYASE EFVLVGYVDY GNFEILSLTR BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000251864/1-1189 LCPIIPKLLE LPMQAIKCVL AGVKPSLGIW TPEAICLMKK LVQNKIITVK ENSBTAP00000009002/1-1184 LCPITPKLLE LPMQAIKCVL AGVKPSLGIW TPEAVCLMKK IVQNKMITVN ENSTTRP00000009633/1-1189 LCPITPKLLE LPMQAIKCVL AGVKPSLGIW TPEAIYLMRK IVQNKMITVK bmy_03055T0/1-1148 LCPITPKLLE LPMQAIKCVL AGVKPSSGIW TPEALCLMRK IVQNKMITVI BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000251864/1-1189 VVDKLENSSL VELIDKSETP HVSVSKVLLD AGFAVGEQSM VTDKPSDVKE ENSBTAP00000009002/1-1184 VVDKLENSSL VELTDRSVTP HISVTKALLN AGFAVEDKGL VTDKPSDVKE ENSTTRP00000009633/1-1189 VVDKLENSSL VELTDRSVMP HISVTRVLID AGFAVGDKGV VTVKPSVMKE bmy_03055T0/1-1148 VVDKLENSSL VELMDRSVMP HISVTKALID AGFAMGDKGV VTDKPSDMKE BACU004668/1-438 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000251864/1-1189 TSVPLGVEGK VNPLEWTWVE LGVDQTVDVV VCVIYSPGEF YCHVLKED-A ENSBTAP00000009002/1-1184 ASVPLGMETK VNPLEWTWVE LAVDQTLDVV VCVIDSPGEF YCHVLKGDGA ENSTTRP00000009633/1-1189 ASVPSGVEAE ISQLEWTWVE LAVDQTVDVV VCVMYSPGEF YCHVLKED-X bmy_03055T0/1-1148 ASVPSGVEAE ISLLEWTWVE LAVDQTVDVV VCMMYSPGEF YCHVLKED-A BACU004668/1-438 ---------- ---------- ---------- --MMYSPGEF YCHVLKED-A 801 850 ENSP00000251864/1-1189 LKKLNDLNKS LAEHCQQKLP NGFKAEIGQP CCAFFAGDGS WYRALVKEIL ENSBTAP00000009002/1-1184 LKELSDLNNL LAEYCQQKLP NDFKAEIGQP CCAFFVGDNN WYRALVKEIL ENSTTRP00000009633/1-1189 XXXXXDLNKL VAEYCQQKLP KNFKAEVGQP CCAFFVGDGN WYRALVKEIL bmy_03055T0/1-1148 LKKLSDLNKL VAEYCQQKLP NNFKAEVGQP CCAFFIGDGN WYRALVKEIL BACU004668/1-438 LKKLSDLNKL VAEYCQQKLP NNFKAEVGQP CCAFFVGDGN WYRALVKEIL 851 900 ENSP00000251864/1-1189 PNGHVKVHFV DYGNIEEVTA DELRMISSTF LNLPFQGIRC QLADIQSRNK ENSBTAP00000009002/1-1184 PNGNFKVHFV DYGNIEEVTA DELQMIPSKF LKLPFQGIQC WLVGIQPRNK ENSTTRP00000009633/1-1189 SNGNVKVQFV DYGNIEEVTA DELQMIPSKF LKLPFQGIQC WLVDIQPRNK bmy_03055T0/1-1148 PNGNIKVQFV DYGNIEEVTA DELQMIPSKF LKLPFQGIQC CLV------- BACU004668/1-438 PNGNIKVQFV DYGNIEEVTA DELQMIPSKF LKLPFQGIQC WLVDIQPRNK 901 950 ENSP00000251864/1-1189 HWSEEAITRF QMCVAGIKLQ ARVVEVTENG IGVELTDLST CYPRIISDVL ENSBTAP00000009002/1-1184 HWSKEAIARF QTCVARIKLQ AQVVEITENG VGIELTDLST SYPRIISDIL ENSTTRP00000009633/1-1189 HWTREAIARF QTCVTGIKLQ ARVVEITENG VGVELTDLST SYPRIITDVL bmy_03055T0/1-1148 ---------- ---------- ---------- ---------- ---------- BACU004668/1-438 RWTREAIARF QTCVTGIKLQ ARVVEITENG VGIELTDLST SYPRIITDVL 951 1000 ENSP00000251864/1-1189 IDEHLVLKSA SPHKDLPNDR LVNKHELQVH VQGLQATSSA EQWKTIELPV ENSBTAP00000009002/1-1184 IDEHLVLKAG SPHTDLAKTR PVDKHDLQID TPGLQAISSA DQWSTIELPV ENSTTRP00000009633/1-1189 IEEHLVLKAS SPCKDLVKNS PVNKHGLQID APWLQATSSA EQWRTIELPV bmy_03055T0/1-1148 ---------- ---------- ---------- -----ATFSA EQWRTIELPV BACU004668/1-438 IEEHLVLKAS SPCKDLVKNS PINKYGLQID APWLQATSSA EQWRTIELPV 1001 1050 ENSP00000251864/1-1189 DKTIQANVLE IISPNLFYAL PKGMPENQEK LCMLTAELLE YCNAPKSRPP ENSBTAP00000009002/1-1184 NKTVQACILE ITNANLFYAL PNEIAEDQEK LSVLTAELLE YCNAQKSRSP ENSTTRP00000009633/1-1189 NKTVQASVLE IVNPNLFYAL PNEMPXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03055T0/1-1148 NKTVQANILE IINPNLFYAL PNEMPEDQEK LCVLTAXLLE YCSAQKSRSA BACU004668/1-438 NKAVQANILE IVNPNLFYAL PNEMPEDQEK LCVLTAELLE YCSAQKSRSA 1051 1100 ENSP00000251864/1-1189 YRPRIGDACC AKYTSDDFWY RAVVLGTSDT DVEVLYADYG NIETLPLCRV ENSBTAP00000009002/1-1184 YTPKIGDACC ARYTSDDCWY RAIVLGTSDA DVRVLYVDYG NIETLPLCRV ENSTTRP00000009633/1-1189 XXXXXXXXXX XXXXXDDFWY RAVVLGTSAA DVKVLYADYG NIETLPLCRV bmy_03055T0/1-1148 YRPKIGDACC ARYTGDDFWY RAIVLGTSAA DVKVLYADYG NIETLPLCRV BACU004668/1-438 YRPKIGDACC ARYTGDDFWY RAIVLGTSAA DVKVLYADYG NIETLPLCRV 1101 1150 ENSP00000251864/1-1189 QPITSSHLAL PFQIIRCSLE GLMELNGSSS QLIIMLLKNF MLNQNVMLSV ENSBTAP00000009002/1-1184 QPISARHLEL PFQIIKCSLD GLMELNGRCS HLMIELLKNF MLNQNVMISV ENSTTRP00000009633/1-1189 QPISASHLEL PFQIIKCSLE GPMELNGSCS QLIIELLKNL MLNQNVMLSV bmy_03055T0/1-1148 QPISASHLEL PFQIIKCSLE GPVELNGSCS QLIIELLKNF MLHQNVMLSV BACU004668/1-438 QPIAASHLEL PFQIIKCSLE GPVELNGSCS QLIIELLKNF MLHQNVMLSV 1151 1200 ENSP00000251864/1-1189 KGITKNVHTV SVEKCSENGT VDVADKLVTF GLAKNITPQR QSALNTEKMY ENSBTAP00000009002/1-1184 KGVIKNVHTV SVEKCSENGI INIADKLVMY GLAKNITSKK PAAVNTETAD ENSTTRP00000009633/1-1189 KGFIKNVHTV SVEKCSENGT INIADKLVMY GLAKNITSEK QSALNKEKVN bmy_03055T0/1-1148 KGFVKNVHTV SVEKCSENGT INLADKLVMY GLAKKITSKK QSALNKEKVN BACU004668/1-438 KGFVKNVHTV SVEKCSENGT INLADKLVMY GLAKKITSKK QSALNKEKVN 1201 1250 ENSP00000251864/1-1189 RMNCCCTELQ KQVEKHEHIL LFLLNNSTNQ NKFIEMKKLL KKTASLGGKP ENSBTAP00000009002/1-1184 RMNCCCTKLQ KQVEKHEQIL LFLLNNPTNQ NKFIEMKKLL KS-------- ENSTTRP00000009633/1-1189 RMNCCCTELQ KQVEKHEQIL LFLLNSPTNQ NKFTEMKKLL KKTLRDQHLG bmy_03055T0/1-1148 RMNCCCTELQ KQVEKHEQIL LFLLNNPTNQ NKFIEMKKWL KS-------- BACU004668/1-438 RMNCCCTELQ KQ-------- ---------K HSLLEINT-- ---------- 1251 1300 ENSP00000251864/1-1189 L ENSBTAP00000009002/1-1184 - ENSTTRP00000009633/1-1189 - bmy_03055T0/1-1148 - BACU004668/1-438 -