KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:00 2014 Check: 00 .. Name: ENSP00000453307/1-421 Len: 633 Check: 9391 Weight: 1.00 Name: bmy_06604T0/1-548 Len: 633 Check: 5598 Weight: 1.00 Name: BACU002153/1-415 Len: 633 Check: 2958 Weight: 1.00 Name: ENSTTRP00000002136/1-421 Len: 633 Check: 552 Weight: 1.00 Name: ENSBTAP00000009013/1-359 Len: 633 Check: 6426 Weight: 1.00 // 1 50 ENSP00000453307/1-421 ---------- ---------- ---------- ---------- MARRYDELPH bmy_06604T0/1-548 ASCPTPWRRH RGPSGAAAPG CALPAGQALE GPGSCRRHQP MARRYDELPH BACU002153/1-415 ---------- ---------- ---------- ---------- MARRYDELPH ENSTTRP00000002136/1-421 ---------- ---------- ---------- ---------- -MRRYDELPH ENSBTAP00000009013/1-359 ---------- ---------- ---------- ---------- MARRYDELPH 51 100 ENSP00000453307/1-421 YPGIVDGPAA LASFPETVPA ---VPGPYGP HRPPQPLPPG LDSDGLKREK bmy_06604T0/1-548 YPGIVDSTAA LAGFSEAVPS APRAPRPYGP HRPPQPPPLG LDSDGLRREK BACU002153/1-415 YPGIVDSTAA LAGFSEAVPS APRAPGPYGP HRPPQPPPLG LDSDGLRREK ENSTTRP00000002136/1-421 YPGIVDSTAA LAGFSEAVPS APRAPGPYGP HRPPQPPPLG LDSDGLRREK ENSBTAP00000009013/1-359 YPGIVDSTAA LAGFSEAVSS APRAPGPYGP HRPPQPP--G LDSDGLRREK 101 150 ENSP00000453307/1-421 DEIYGHPLFP LLALVFEKCE LATCSPRDGA GAGLGTPPGG DVCSSDSFNE bmy_06604T0/1-548 DEIYGHPLFP LLALVFEKCE LATCSPRDGA GTGLGTPPGS DVCSSDSFNE BACU002153/1-415 DEIYGHPLFP LLALVFEKCE LATCSPRDGA GTGLGTPPGS DVCSSDSFNE ENSTTRP00000002136/1-421 DEIYGHPLFP LLALVFEKCE LATCSPRDGA GTGLGTPPGS DVCSSDSFNE ENSBTAP00000009013/1-359 DEIYGHPLFP LLALVFEKCE LATCSPRDGA GTGLGTPPGG DVCSSDSFNE 151 200 ENSP00000453307/1-421 DIAAFAKQVR SERPLFSSNP ELDNLMIQAI QVLRFHLLEL EK-------- bmy_06604T0/1-548 DIAAFAKQVR SERPLFSSNP ELDNLMIQAI QVLRFHLLEL EKVSACHFPS BACU002153/1-415 DIAAFAKQVR SERPLFSSNP ELDNLMIQAI QVLRFHLLEL EK-------- ENSTTRP00000002136/1-421 DIAAFAKQVR SERPLFSSNP ELDNLMIQAI QVLRFHLLEL EK-------- ENSBTAP00000009013/1-359 DIAAFAKQVR SERPLFSSNP ELDNLMIQAI QVLRFHLLEL E--------- 201 250 ENSP00000453307/1-421 ---------- ---------- ---------- ---------- ---------- bmy_06604T0/1-548 RPHLPPIPSL LAPSTPPSGS LPTRVGAEGH PHPYTPQPWP PGGPPSTPVP BACU002153/1-415 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002136/1-421 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009013/1-359 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000453307/1-421 --VHDLCDNF CHRYITCLKG KMPIDLVIED RDGGCREDFE DYPASCPSLP bmy_06604T0/1-548 PQVHDLCDNF CHRYITCLKG KMPIDLVIED RDGGCREDLD DYPASCPSLP BACU002153/1-415 --VHDLCDNF CHRYITCLKG KMPIDLVIED RDGGCREDLD DYPASCPSLP ENSTTRP00000002136/1-421 --VHDLCDNF CHRYITCLKG KMPIDLVIED RDGGCREDLD DYPASCPSLP ENSBTAP00000009013/1-359 ---------- --------KG KMPIDLVIED RDSSCREDLD DYPASCPSLP 301 350 ENSP00000453307/1-421 DQNNMWIRDH EDSGSVHLGT PGPSSGGLAS QSGDNSSDQ- -------GDG bmy_06604T0/1-548 DQHAS----- ---------- --PCS----- ---------- -------GDG BACU002153/1-415 DQNTTWIRDH EDSGSVHLGT SGPSSGGLAS QSGDNSSDQA QRASPCSGDG ENSTTRP00000002136/1-421 DQNTTWIRDQ EDSGSVHLGT PGPSSGGLAS QSGDNSSDQ- -------GDG ENSBTAP00000009013/1-359 DQNTAWIRDH EDSGSVHLGT PGPSSGGLAS QSGDNSSDQ- -------GDG 351 400 ENSP00000453307/1-421 LDTSVASPSS GGEDEDLDQE RRRNKKRGIF PKVATNIMRA WLFQHLSRRS bmy_06604T0/1-548 LDTNVASPSS GGEDEELDQE PRQNKKRGIF PKVATNIMRA WLFQHLS--- BACU002153/1-415 LDTNVASPSS GGEDEELDQE PRQNKKRGIF PKVATNIMRA WLFQHLS--- ENSTTRP00000002136/1-421 LDTNVASPSS GGEDEELDHE RRQNKKRGIF PKVATNIMRA WLFQHLSRSS ENSBTAP00000009013/1-359 LDTSVASPSS GGEDEELDQE RRRNKKRGIF PKVATNIMRA WLFQHLS--- 401 450 ENSP00000453307/1-421 EAPVLPDVCL GLGSPSPGPR WARPWGSDCG RPGRQSDSCW WLQHPYPSEE bmy_06604T0/1-548 ---------- ---------- ---------- ---------- ---HPYPSEE BACU002153/1-415 ---------- ---------- ---------- ---------- ---HPYPSEE ENSTTRP00000002136/1-421 DRPPAVLACL SLGSPTPGPG QARPGGS--G QPGKQGDSCW WPQHPYPSEE ENSBTAP00000009013/1-359 ---------- ---------- ---------- ---------- ---HPYPSEE 451 500 ENSP00000453307/1-421 QKKQLAQDTG LTILQVNNWF INARRRIVQP MIDQSNRT-G QGAAFSPEGQ bmy_06604T0/1-548 QKKQLSQDTG LTILQVNNWF INARRRIVQP MIDQSNRTAG QGAAFSPEGQ BACU002153/1-415 QKKQLSQDTG LTILQVNNWF INARRRIVQP MIDQSNRTAG QGAAFSPEGQ ENSTTRP00000002136/1-421 QKKQLSQDTG LTILQVNNWF INARRRIVQP MIDQSNRT-G QGAAFSPEGQ ENSBTAP00000009013/1-359 QKKQLAQDTG LTILQVNNWF INARRRIVQP MIDQSNRT-G QGAAFSPEGQ 501 550 ENSP00000453307/1-421 PIGGYTETQP HVAVRPP--- ---------- ---------- ---------- bmy_06604T0/1-548 PMGGYTETQP QVTVRPPGKT RPLTKPHPQH CRINGDEFEL RRRVALFIEA BACU002153/1-415 PMAGYTETQP QVTVRPP--- ---------- ------DPHL WTVAARLIPA ENSTTRP00000002136/1-421 PMGAYTETQP QVTVRPP--- ---------- ---------- ---------- ENSBTAP00000009013/1-359 PMAGYTETQS HVTVRPP--- ---------- ---------- ---------- 551 600 ENSP00000453307/1-421 GSVGMS---- LNLEGEWHYL ---------- ---------- ---------- bmy_06604T0/1-548 GVRRNTPTSG LWLPGSYLLL VDTWPSGFRT PPPTAPPNSM PTSLGPCRDT BACU002153/1-415 SGRRLA---- LWLQHPTSYS ---------- -----PPTQC LPPWGPAGT- ENSTTRP00000002136/1-421 GSMGMS---- LNLEGEWHYL ---------- ---------- ---------- ENSBTAP00000009013/1-359 GSMGMS---- LNLEGEWHYL ---------- ---------- ---------- 601 650 ENSP00000453307/1-421 ---------- ---------- ---------- --- bmy_06604T0/1-548 RGLSAHSRVS QGQRQGLQAL CPTSALTSAW NPS BACU002153/1-415 ---------- ---------- ---------- --- ENSTTRP00000002136/1-421 ---------- ---------- ---------- --- ENSBTAP00000009013/1-359 ---------- ---------- ---------- ---