KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:37:01 2014  Check: 00 ..

 Name: BACU008085/1-398          Len:    450  Check:  5701  Weight:  1.00
 Name: bmy_04698T0/1-301         Len:    450  Check:  8190  Weight:  1.00
 Name: ENSP00000446680/1-304     Len:    450  Check:  5876  Weight:  1.00
 Name: ENSBTAP00000009028/1-304  Len:    450  Check:  5089  Weight:  1.00

//


                          1                                                   50
BACU008085/1-398          ---------- ---------- ---------- ---------- ---------- 
bmy_04698T0/1-301         MAQPNGLWDS GKSEPERAQC SSCSSTSTED HRGSGIRSKT SIWSRQEKRT 
ENSP00000446680/1-304     ---------- ---------- ---------- ---------- ---------- 
ENSBTAP00000009028/1-304  ---------- ---------- ---------- ---------- ---------- 


                          51                                                 100
BACU008085/1-398          MFNSVNLGNF CSPSRKERGA DFGERGSCAS NLYLPSCTYY VPEFSTVSSF 
bmy_04698T0/1-301         MFNSVNLGNF CSPSRKERGA DFGERGSCAS NLYLPSCTYY VPEFSTVSSF 
ENSP00000446680/1-304     MFNSVNLGNF CSPSRKERGA DFGERGSCAS NLYLPSCTYY MPEFSTVSSF 
ENSBTAP00000009028/1-304  MFNSVNLGNF CSPSRKERGA DFGERGSCAS NLYLPSCTYY VPEFSTVSSF 


                          101                                                150
BACU008085/1-398          LPQAPSRQIS YPYPAQVPPV REVSYGLEPS GKWHHRNSYS SCYAAADELM 
bmy_04698T0/1-301         LPQAPSRQIS YPYPAQVPPV REVSYGLEPS GKWHHRNSYS SCYAAADELM 
ENSP00000446680/1-304     LPQAPSRQIS YPYSAQVPPV REVSYGLEPS GKWHHRNSYS SCYAAADELM 
ENSBTAP00000009028/1-304  LPQAPSRQIS YPYPAQVPPV REVSYGLEPS GKWHPRNSYS SCYAAADELM 


                          151                                                200
BACU008085/1-398          HRECLPPSTV TEILMKNEGS YGGHHHPSAP HAAPAGFYSS VNKNSVLPQA 
bmy_04698T0/1-301         HRECLPPSTV TEILMKNEGS YGGHHHPSAP HAAPAGFYSS VNKNSVLPQA 
ENSP00000446680/1-304     HRECLPPSTV TEILMKNEGS YGGHHHPSAP HATPAGFYSS VNKNSVLPQA 
ENSBTAP00000009028/1-304  HRECLPPSTV TEILMKNEGS YGGHHHPSAP HAAPAGFYSS VNKNSVLPQA 


                          201                                                250
BACU008085/1-398          FDRFFDNAYC GGGDASAEPP CPGKGEAKGE PEAPPASGLA SRAEAGPEAE 
bmy_04698T0/1-301         FDRFFDNAYC GGGDASAEPP CPGK------ ---------- ---------- 
ENSP00000446680/1-304     FDRFFDNAYC GGGDPPAEPP CSGKGEAKGE PEAPPASGLA SRAEAGAEAE 
ENSBTAP00000009028/1-304  FDRFFDNAYC GGGDPPAEPP CPGKGEAKGE PEAPPASGLA SRAEAGAEAE 


                          251                                                300
BACU008085/1-398          AEEENTNPSS SGSAHSAAKE PAKGAAPRRP PHPQEALPL- -FEIPDPGTG 
bmy_04698T0/1-301         ---------- ---------- -------DAP RTRKKRCPYS KFQIREL--- 
ENSP00000446680/1-304     AEEENTNPSS SGSAHSVAKE PAKGAAPNAP RTRKKRCPYS KFQIREL--- 
ENSBTAP00000009028/1-304  AEEENTNPSS SGSAHSAAKE PAKGAAPNAP RTRKKRCPYS KFQIREL--- 


                          301                                                350
BACU008085/1-398          ARVFLQRVYQ QREAAAAVPD AEPDGPTSEN LVSEQKDERK KTKQRPAAVF 
bmy_04698T0/1-301         EREFFFNVYI NKEKRLQL-- -------SRM LNLTDRQVKI WFQNRRM--- 
ENSP00000446680/1-304     EREFFFNVYI NKEKRLQL-- -------SRM LNLTDRQVKI WFQNRRM--- 
ENSBTAP00000009028/1-304  EREFFFNVYI NKEKRLQL-- -------SRM LNLTDRQVKI WFQNRRM--- 


                          351                                                400
BACU008085/1-398          LGKSSAVTAD RALWGEGGKG EIILFYFYFL FSNSPSFRGW KTGLWPGLAP 
bmy_04698T0/1-301         --KEKKLSRD RLQY------ ---------- FSGNPLL--- ---------- 
ENSP00000446680/1-304     --KEKKLSRD RLQY------ ---------- FSGNPLL--- ---------- 
ENSBTAP00000009028/1-304  --KEKKLSRD RLQY------ ---------- FSGNPLL--- ---------- 


                          401                                                450
BACU008085/1-398          TAVARTSFRN LLHLGLTQCG TGTGPGKGGE GKCLIHGEWT PLAPRPRIFI 
bmy_04698T0/1-301         ---------- ---------- ---------- ---------- ---------- 
ENSP00000446680/1-304     ---------- ---------- ---------- ---------- ---------- 
ENSBTAP00000009028/1-304  ---------- ---------- ---------- ---------- ----------