KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:37:01 2014 Check: 00 .. Name: BACU008085/1-398 Len: 450 Check: 5701 Weight: 1.00 Name: bmy_04698T0/1-301 Len: 450 Check: 8190 Weight: 1.00 Name: ENSP00000446680/1-304 Len: 450 Check: 5876 Weight: 1.00 Name: ENSBTAP00000009028/1-304 Len: 450 Check: 5089 Weight: 1.00 // 1 50 BACU008085/1-398 ---------- ---------- ---------- ---------- ---------- bmy_04698T0/1-301 MAQPNGLWDS GKSEPERAQC SSCSSTSTED HRGSGIRSKT SIWSRQEKRT ENSP00000446680/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009028/1-304 ---------- ---------- ---------- ---------- ---------- 51 100 BACU008085/1-398 MFNSVNLGNF CSPSRKERGA DFGERGSCAS NLYLPSCTYY VPEFSTVSSF bmy_04698T0/1-301 MFNSVNLGNF CSPSRKERGA DFGERGSCAS NLYLPSCTYY VPEFSTVSSF ENSP00000446680/1-304 MFNSVNLGNF CSPSRKERGA DFGERGSCAS NLYLPSCTYY MPEFSTVSSF ENSBTAP00000009028/1-304 MFNSVNLGNF CSPSRKERGA DFGERGSCAS NLYLPSCTYY VPEFSTVSSF 101 150 BACU008085/1-398 LPQAPSRQIS YPYPAQVPPV REVSYGLEPS GKWHHRNSYS SCYAAADELM bmy_04698T0/1-301 LPQAPSRQIS YPYPAQVPPV REVSYGLEPS GKWHHRNSYS SCYAAADELM ENSP00000446680/1-304 LPQAPSRQIS YPYSAQVPPV REVSYGLEPS GKWHHRNSYS SCYAAADELM ENSBTAP00000009028/1-304 LPQAPSRQIS YPYPAQVPPV REVSYGLEPS GKWHPRNSYS SCYAAADELM 151 200 BACU008085/1-398 HRECLPPSTV TEILMKNEGS YGGHHHPSAP HAAPAGFYSS VNKNSVLPQA bmy_04698T0/1-301 HRECLPPSTV TEILMKNEGS YGGHHHPSAP HAAPAGFYSS VNKNSVLPQA ENSP00000446680/1-304 HRECLPPSTV TEILMKNEGS YGGHHHPSAP HATPAGFYSS VNKNSVLPQA ENSBTAP00000009028/1-304 HRECLPPSTV TEILMKNEGS YGGHHHPSAP HAAPAGFYSS VNKNSVLPQA 201 250 BACU008085/1-398 FDRFFDNAYC GGGDASAEPP CPGKGEAKGE PEAPPASGLA SRAEAGPEAE bmy_04698T0/1-301 FDRFFDNAYC GGGDASAEPP CPGK------ ---------- ---------- ENSP00000446680/1-304 FDRFFDNAYC GGGDPPAEPP CSGKGEAKGE PEAPPASGLA SRAEAGAEAE ENSBTAP00000009028/1-304 FDRFFDNAYC GGGDPPAEPP CPGKGEAKGE PEAPPASGLA SRAEAGAEAE 251 300 BACU008085/1-398 AEEENTNPSS SGSAHSAAKE PAKGAAPRRP PHPQEALPL- -FEIPDPGTG bmy_04698T0/1-301 ---------- ---------- -------DAP RTRKKRCPYS KFQIREL--- ENSP00000446680/1-304 AEEENTNPSS SGSAHSVAKE PAKGAAPNAP RTRKKRCPYS KFQIREL--- ENSBTAP00000009028/1-304 AEEENTNPSS SGSAHSAAKE PAKGAAPNAP RTRKKRCPYS KFQIREL--- 301 350 BACU008085/1-398 ARVFLQRVYQ QREAAAAVPD AEPDGPTSEN LVSEQKDERK KTKQRPAAVF bmy_04698T0/1-301 EREFFFNVYI NKEKRLQL-- -------SRM LNLTDRQVKI WFQNRRM--- ENSP00000446680/1-304 EREFFFNVYI NKEKRLQL-- -------SRM LNLTDRQVKI WFQNRRM--- ENSBTAP00000009028/1-304 EREFFFNVYI NKEKRLQL-- -------SRM LNLTDRQVKI WFQNRRM--- 351 400 BACU008085/1-398 LGKSSAVTAD RALWGEGGKG EIILFYFYFL FSNSPSFRGW KTGLWPGLAP bmy_04698T0/1-301 --KEKKLSRD RLQY------ ---------- FSGNPLL--- ---------- ENSP00000446680/1-304 --KEKKLSRD RLQY------ ---------- FSGNPLL--- ---------- ENSBTAP00000009028/1-304 --KEKKLSRD RLQY------ ---------- FSGNPLL--- ---------- 401 450 BACU008085/1-398 TAVARTSFRN LLHLGLTQCG TGTGPGKGGE GKCLIHGEWT PLAPRPRIFI bmy_04698T0/1-301 ---------- ---------- ---------- ---------- ---------- ENSP00000446680/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009028/1-304 ---------- ---------- ---------- ---------- ----------