KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:01 2014 Check: 00 .. Name: BACU011189/1-534 Len: 618 Check: 9703 Weight: 1.00 Name: ENSP00000379154/1-481 Len: 618 Check: 9577 Weight: 1.00 Name: ENSBTAP00000009038/1-457 Len: 618 Check: 5126 Weight: 1.00 Name: bmy_07934T0/1-495 Len: 618 Check: 5367 Weight: 1.00 Name: ENSTTRP00000014426/1-488 Len: 618 Check: 9018 Weight: 1.00 // 1 50 BACU011189/1-534 MATPYVPVPM PIGNSASSFA TNRNQRSSSF GSISTSSNSS KGQLEDSNMG ENSP00000379154/1-481 ---------- ---------- --MPQTSVVF SSILGPSCSG QVQPGMGERG ENSBTAP00000009038/1-457 ---------- ---------- ---------- ---------- -----MGERG bmy_07934T0/1-495 MRDVPPSGCA GHVDWGPTPG ETMPQTSVVF SSILGPSCSG QVQPGMGERG ENSTTRP00000014426/1-488 ---------- ----MFLEPQ ETMPQTSVVF SSILGPGCSG QVQPGMGERG 51 100 BACU011189/1-534 NFKQTGVPDQ MESTSSVCSS PLIRTKFTGA DSSIEYSARP RESEEQNPET ENSP00000379154/1-481 GGAGGGSGDL IFQDGHLISG S--------- ---------- ---------- ENSBTAP00000009038/1-457 GGA-GGSGDL IFQDGRLISG S--------- ---------- ---------- bmy_07934T0/1-495 GGA-CSSGDL IFQDGRLISG S--------- ---------- ---------- ENSTTRP00000014426/1-488 GGV-GSSGDL VFQDGRLISG S--------- ---------- ---------- 101 150 BACU011189/1-534 VNLEDRPSTP IILGYEVMEE RAKFTVYKIL VKKSQEESWV VFRRYTDFSR ENSP00000379154/1-481 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009038/1-457 ---------- ---------- ---------- ---------- ---------- bmy_07934T0/1-495 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014426/1-488 ---------- ---------- ---------- ---------- ---------- 151 200 BACU011189/1-534 LNDKLKEMFP GFRLALPPKR WFKDNYNADF LEDRQLGLQA FLQNLVAHKD ENSP00000379154/1-481 LEALMEHLVP ---------- ------TVDY YPDR------ ---------- ENSBTAP00000009038/1-457 LEALMEHLVP ---------- ------TVDY YPDR------ ---------- bmy_07934T0/1-495 LEALMEHLVP ---------- ------TVDY YPDR------ ---------- ENSTTRP00000014426/1-488 LEALMEHLVP ---------- ------TVDY YPDR------ ---------- 201 250 BACU011189/1-534 IANWTYIFTF LLSSRVFVPP HDLLARVGQI CLEQRQQLEA GSDKARLKSF ENSP00000379154/1-481 ----TYIFTF LLSSRVFMPP HDLLARVGQI CVEQKQQLEA GPEKAKLKSF ENSBTAP00000009038/1-457 ----TYIFTF LLSSRVFIPP HDLLARVGQL CVEQRQQLEA GSEKAKLKSF bmy_07934T0/1-495 ----TYIFTF LLSSRVFVPP HDLLARVGQI CLEQRQQLEA GSDKARLKSF ENSTTRP00000014426/1-488 ----TYIFTF LLSSRVFIPP HDLLARVGQI CLEQRQQLEA GSDKARLKSF 251 300 BACU011189/1-534 SAKIVQLLKE WTEAFPYDFQ DEKAMAELKA ITHRVTQCDE ENGTVKKAMA ENSP00000379154/1-481 SAKIVQLLKE WTEAFPYDFQ DEKAMAELKA ITHRVTQCDE ENGTVKKAIA ENSBTAP00000009038/1-457 SAKIVQLLKE WTEAFPFDFQ DEKAMAELKA ITHRVTQCDE ENGTVKKAIS bmy_07934T0/1-495 SAKIVQLLKE WTEAFPYDFQ DEKAMAELKA ITHRVTQCDE ENGTVKKAIA ENSTTRP00000014426/1-488 SAKIVQLLKE WTEAFPYDFQ DEKAMAELKA ITHRVTQCDE ENGTVKKAIA 301 350 BACU011189/1-534 QMTQSLLLSL AARSQLQELR EKLRSPAMDK GPILKAKPPA AQKDILGVCC ENSP00000379154/1-481 QMTQSLLLSL AARSQLQELR EKLRPPAVDK GPILKTKPPA AQKDILGVCC ENSBTAP00000009038/1-457 QMTQSLLLSL AARSQLQELR EKLRSPAMDK GPVLKAKPPA AQKDILGVCC bmy_07934T0/1-495 QMTQSLLLSL AARSQLQELR EKLRSPAMDR GPILKAKPPA AQKDILGVCC ENSTTRP00000014426/1-488 QMTQSLLLSL AARSQLQELR EKLRSPAMDK GPILKAKPPA AQKDILGVCC 351 400 BACU011189/1-534 DPLVLAQQLT HIELERVSSI HPEDLMQIVS HMDSRDKHRC RGDLIKTYSL ENSP00000379154/1-481 DPLVLAQQLT HIELDRVSSI YPEDLMQIVS HMDSLDNHRC RGDLTKTYSL ENSBTAP00000009038/1-457 DPLVLAQQLT HIELERVSSI HPEDLMQIVS HMDSRDKHRC RGDMTKTYSL bmy_07934T0/1-495 DPLVLAQQLT HIELERVSSI HPEDLMQIVS HMDSRDKHRC RGDLIKTYSL ENSTTRP00000014426/1-488 DPLVLAQQLT HIELERVSSI HPEDLMQIVS HMDSRDKHRC RGDLIKTYSL 401 450 BACU011189/1-534 EAYDNWFNCL SMLVATEAFC ETLEETNYRF QKELLEKQKE ---------- ENSP00000379154/1-481 EAYDNWFNCL SMLVATEVCR VVKKKHRTRM LEFFIDVARE CFNIGNFNSM ENSBTAP00000009038/1-457 EAYDNWFNCL SMLVATEVCR VVKKKHRTRM LEFFIDVARE CFNIGNFNSM bmy_07934T0/1-495 EAYDNWFNCL SMLVATEVCR VVKKKHRTRM LEFFIDVARE CFNIGNFNSM ENSTTRP00000014426/1-488 EAYDNWFNCL SMLVATEVCR VVKKKHRTRM LEFFIDVARE CFNIGNFNSM 451 500 BACU011189/1-534 ---------- -LESLKKLLC E-KQLLIDTL ENRI---RNL C------LEP ENSP00000379154/1-481 MAIISGMNLS PVARLKKTWS KVKTAKFDVL EHHMDPSSNF CNYRTALQGA ENSBTAP00000009038/1-457 MAIISGMNLS PVARLKKTWS KVKTAKFDVL EHHMDPSSNF CNYRTALQGA bmy_07934T0/1-495 MAIISGMNLS PVARLKKTWS KVKTAKFDVL EHHMDPSSNF CNYRTALQGA ENSTTRP00000014426/1-488 MAIISGMNLS PVARLKKTWS KVKTAKFDVL EHHMDPSSNF CNYRTALQGA 501 550 BACU011189/1-534 EESLLVSGTE GEQIL----- ---------- KVESSAL--- --------EV ENSP00000379154/1-481 TQRSQMANSS REKIVIPVFN LFVKDIYFLH KIHTNHLPNG HINFKKFWEI ENSBTAP00000009038/1-457 TQRSQTANSS REKIVIPVFN LFVKDIYFLH KIHTNHLPNG HINFKKFWEI bmy_07934T0/1-495 TQRSQMANSS REKIVIPVFN LFVKDIYFLH KIHTNHLPNG HINFKKFWDI ENSTTRP00000014426/1-488 TQRSQMANSS REKIVIPVFN LFVKDIYFLH KIHTNHLPNG HINFKKFWDI 551 600 BACU011189/1-534 DQDVLD---- ---EESRADN KQCSS----- --FCEPENSI SDIEVAEVAY ENSP00000379154/1-481 SRQIHEFMTW TQVECPFEKD KKIQSYLLTA PIYSEEALFV ASFESEGPEN ENSBTAP00000009038/1-457 SRQIHEFMTW TQVECPFEKD KKIQSYLLTA PIYSEEALFI ASFESEGPEN bmy_07934T0/1-495 SRQIHEFMTW TQVECPFEKD KKIQSYLLTA PIYSEEALFI ASFESEGPEN ENSTTRP00000014426/1-488 SRQIHEFMTW TQVECPFEKD KKIQSYLLTA PIYSEEALFI ASFESEGPEN 601 650 BACU011189/1-534 NVEDD----- -------- ENSP00000379154/1-481 HMEKDSWKTL RTTLLNRA ENSBTAP00000009038/1-457 HMEKDSWKTL RTTLLNRA bmy_07934T0/1-495 HMEKDSWKTL R------- ENSTTRP00000014426/1-488 HMEKDSWKTL RTTLLNRA