KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:03 2014 Check: 00 .. Name: ENSTTRP00000012509/1-942 Len: 1269 Check: 3707 Weight: 1.00 Name: ENSP00000319974/1-941 Len: 1269 Check: 7514 Weight: 1.00 Name: ENSBTAP00000009058/1-942 Len: 1269 Check: 8655 Weight: 1.00 Name: bmy_12478T0/1-928 Len: 1269 Check: 6090 Weight: 1.00 Name: BACU012311/1-974 Len: 1269 Check: 2236 Weight: 1.00 // 1 50 ENSTTRP00000012509/1-942 ---------- ------MKGS NRNKDHSAEG EGAGKRPKRK CLQWHPLLAK ENSP00000319974/1-941 ---------- ------MKGS NRNKDHSAEG EGVGKRPKRK CLQWHPLLAK ENSBTAP00000009058/1-942 ---------- ------MKGS NRNKDHSAEG EGTGKRPKRK CLQWHPLLAK bmy_12478T0/1-928 ---------- ---------- ---------- ---------- ---------- BACU012311/1-974 MSSAAALSEG FKQVTVMKGS NRNKDHSAEG EGAGKRPKRK CLQWHPLLAK 51 100 ENSTTRP00000012509/1-942 KLLDFSEEEE EEDEEEDIDK VQLLGADGLE QDVGETEDDE SPEQRARRPM ENSP00000319974/1-941 KLLDFSEEEE EEDEEEDIDK VQLLGADGLE QDVGETEDDE SPEQRARRPM ENSBTAP00000009058/1-942 KLLDFSEEEE EEDEEEDIDK VQLLGADGLE QDVGETEDDE SPEQRARRPM bmy_12478T0/1-928 ---------- ---------- ---------- ---------- ---------- BACU012311/1-974 KLLDFSEEEE EDDEEEDIDK VQLLGADGLE QDVGETEDDE SPEQRARRPM 101 150 ENSTTRP00000012509/1-942 NAFLLFCKRH RSLVRQEHPR LDNRGATKIL ADWWAVLDPK EKQKYTDMAK ENSP00000319974/1-941 NAFLLFCKRH RSLVRQEHPR LDNRGATKIL ADWWAVLDPK EKQKYTDMAK ENSBTAP00000009058/1-942 NAFLLFCKRH RSLVRQEHPR LDNRGATKIL ADWWAVLDPK EKQKYTDMAK bmy_12478T0/1-928 ---------- ---------- ---------- ---------- ---------- BACU012311/1-974 NAFLLFCKRH RSLVRQEHPR LDNRGATKIL ADWWAVLDPK EKQKYTDMAK 151 200 ENSTTRP00000012509/1-942 EYKDAFMKAN PGYKWCPTTN KPVKSPTS-T VNPRKKLWAF PSDSSRDLSS ENSP00000319974/1-941 EYKDAFMKAN PGYKWCPTTN KPVKSPTP-T VNPRKKLWAF PSDSSRDLPS ENSBTAP00000009058/1-942 EYKDAFMKAN PGYKWCPTTN KPVKSPAPTT VNPRKKLWAF PSDSSRDLPS bmy_12478T0/1-928 ---------- ---------- ---------- ---------- ---------- BACU012311/1-974 EYKDAFMKAN PGYKWCPTTN KPVKSPTS-A VNPRKKLWAF PSDSSRDLPS 201 250 ENSTTRP00000012509/1-942 PKKAKTEEMP QLNFGMADPT QMGGLSMLLL AGEHALGTPE ISSGTCRPDV ENSP00000319974/1-941 PKKAKTEEMP QLNFGMADPT QMGGLSMLLL AGEHALGTPE VSSGTCRPDV ENSBTAP00000009058/1-942 PKKTKTEEMP QLNFGMADPT QMGGLSMLLL AGEHALGTPE ISSGTCRPDV bmy_12478T0/1-928 ---------- ---------- ---------- ---------- ---------- BACU012311/1-974 PKKAKTEEMP QLNFGMADPT QMGGLSMLLL AGEHALGTPE ISSGTCRPDV 251 300 ENSTTRP00000012509/1-942 SESSELRQKS PLFQFAEISS GTSHPDVPSK QCQASALFQF AEISSNTSQL ENSP00000319974/1-941 SESPELRQKS PLFQFAEISS STSHSDASTK QCQTSALFQF AEISSNTSQL ENSBTAP00000009058/1-942 PESSELRQKS PLFQFAEISS STSHPDAPSK QCQASALFQF AEISSNTSHL bmy_12478T0/1-928 ---------- ---------- ---------- ---------- ---------- BACU012311/1-974 SESSELRQKS PLFQFAEISS DTSHPDVPSK QCQASALFQF AEISSNTSQL 301 350 ENSTTRP00000012509/1-942 GSAEPVKRCG KSALFQLAEM CLASEGVKME ESKLIKAKES DGGRIKELEK ENSP00000319974/1-941 GGAEPVKRCG KSALFQLAEM CLASEGMKME ESKLIKAKES DGGRIKELEK ENSBTAP00000009058/1-942 GGAEPVKRCG KSALFQLAEM CLASEGVKME ESKLIRTKEL DGGRIKELEK bmy_12478T0/1-928 ---------- ---------- --------ME ESKXIKAKES DGGRIKELEK BACU012311/1-974 GGAEPVKRCG KSALFQLAE- ---AKGVKME ESKLIKAKES DGGRIKELEK 351 400 ENSTTRP00000012509/1-942 GKEEREIKME KIDEARLQKE AEFEKSAKEN VRDSKELRNF EELRMDDIMG ENSP00000319974/1-941 GKEEKEIKME KTDETRLQKE AEFEKSAKEN LRDSKELRNF EALQIDDIMA ENSBTAP00000009058/1-942 GKEERDTKME KTDEARLQKE AEFEKSAKEN VRDSKEIRNF EELRMDDIIG bmy_12478T0/1-928 GKEEREIKME KIDEARLQKE AEFEKSAKEN VRDSKELRNF EELRMDDIMG BACU012311/1-974 GKEEREIKME KIDEARLQKE AEFEKSAKEN VRDSKELRNF EELRMDDIMG 401 450 ENSTTRP00000012509/1-942 IKMEAPKEIK KEELEEDQKC SHFPDFSYSA SSKIIISDVP SRKDHMCHPH ENSP00000319974/1-941 IKMEDPKEIR KEELEEDHKC SHFPDFSYSA SSKIIISDVP SRKDHMCHPH ENSBTAP00000009058/1-942 IKMEAPKEIK KEELEEDQKC GHFPDFSYSA SSKIIISDVP SRKDHICHPH bmy_12478T0/1-928 IKMEAPKEIK KEELEEDQKC SHFPDFSYSA SSKIIISDVP SRKDHMCHPH BACU012311/1-974 IKMEAPKEIK KEELEEDQKC SHFPDFSYSA SSKIIISDVP SRKDHMCHPH 451 500 ENSTTRP00000012509/1-942 GIMIIEDPTA LSKPEKLKKK KKKNKMDRHG NDKSTPKKTC KKRQSSESDI ENSP00000319974/1-941 GIMIIEDPAA LNKPEKLKKK KKKSKMDRHG NDKSTPKKTC KKRQSSESDI ENSBTAP00000009058/1-942 GIMIIEDPTA LSKPEKLKKK KKKNKMDRHG NDKSTPKKAC KKRQSSESDI bmy_12478T0/1-928 GIMIIEDPTA LSKPEKLKKK KKKNKMDRHG NDKSTPKKTC KKRQSSESDI BACU012311/1-974 GIMIIEDPTA LSKPEKLKKK KKKNKMDRHG NDKSTPKKTC KKRQSSESDI 501 550 ENSTTRP00000012509/1-942 ESVMYTIEAV AKGDWGIEKL GETPRKKVRT SSSGKGSILD AKPPKKKVKS ENSP00000319974/1-941 ESVIYTIEAV AKGDWGIEKL GDTPRKKVRT SSSGKGSILD AKPPKKKVKS ENSBTAP00000009058/1-942 ESVMYTIEAV AKGDWGIEKL GDTPRKKVRP SSSGKGSILD AKPPKKKVKS bmy_12478T0/1-928 ESVMYTIEAV AKGDWGIEKL GETPRKKVRT SSSGKGSILD AKPPKKKVKS BACU012311/1-974 ESVMYTIEAV AKGDWGIEKL GETPRKKVRT SSSGKGSILD AKPPKKKVKS 551 600 ENSTTRP00000012509/1-942 REKKMSKEKS SDTTKESRPQ DFISISASKN ISGEVPEGIK AEPLTPTEDA ENSP00000319974/1-941 REKKMSKEKS SDTTKESRPP DFISISASKN ISGETPEGIK AEPLTPMEDA ENSBTAP00000009058/1-942 REKKMSKEKS SDPTKESRPP DFISISASKN ISGEVPEGIK AEPLTPTEDA bmy_12478T0/1-928 REKKMSKEKS SDTTKESRPQ DFISISASKN ISGEVPEGIK AEPLTPTEDA BACU012311/1-974 REKKMSKEKS SDTTKESRPQ DFISISASKN ISGEVPEGIK AEPLTPTEDA 601 650 ENSTTRP00000012509/1-942 LPPSLSGQAK PEDSDCHRKI ETCGSRKSER SCKGALYKTL VSEGMLTSLR ENSP00000319974/1-941 LPPSLSGQAK PEDSDCHRKI ETCGSRKSER SCKGALYKTL VSEGMLTSLR ENSBTAP00000009058/1-942 LPPTLSGQAK PEDSDCHRKI ETCGSRKSER SCKGALYKTL VSEGMLTSLR bmy_12478T0/1-928 LPPSLSGQAK PEDSDCHRKI ETCGSRKSER SCKGALYKTL VSEGMLTSLR BACU012311/1-974 LPPSLSGQAK PEDSDCHRKI ETCGSRKSER SCKGALYKTL VSEGMLTSLR 651 700 ENSTTRP00000012509/1-942 ANVDRGKRSS GKGNSSDHEG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000319974/1-941 ANVDRGKRSS GKGNSSDHEG -CWNEESWTF SQSGTSGSKK FKKTKPKEDC ENSBTAP00000009058/1-942 ANVDRGKRSS GKGNSSDHEG -CWNEESWTF SQSGTSGSKK FKKTKPKEDS bmy_12478T0/1-928 ANVDRGKRSS GKGNSSDHEG -CWNEESWXF NQSGTSGSKK FKKTKPKEDS BACU012311/1-974 ANVDRGKRSS GKGNSSDHEG -CWNEESWTF NQSGTSGSKK FKKTKPKEDS 701 750 ENSTTRP00000012509/1-942 XXXSAKLDEE FEKKFNSLPQ YSPVTFDRKC VPVPRKKKKT GNMSSEPTKT ENSP00000319974/1-941 LLGSAKLDEE FEKKFNSLPQ YSPVTFDRKC VPVPRKKKKT GNVSSEPTKT ENSBTAP00000009058/1-942 VLGSTKLDEE FEKKFNSLPQ YSPVTFDRKC VPVPRKKKKT GNMSAEPTKT bmy_12478T0/1-928 LLGSAKLDEE FEKKFNSLPQ YSPIT----- -----TTQFK NYIYSAVTGC BACU012311/1-974 LLGSAKLDEE FEKKFNSLPQ YSPVTFDRKC VPVPRKKKKT GNMSSEPTKT 751 800 ENSTTRP00000012509/1-942 SKGPFQSQKK NLFHKIVSKY KHKKEKPNVP EK-------G SGDKWSNKQL ENSP00000319974/1-941 SKGPFQSQKK NLFHKIVSKY KHKKEKPNVP EK-------G SGDKWSNKQL ENSBTAP00000009058/1-942 SKGPFQSQKK NLFHKIVSKY KHKKEKPNVP EK-------G SGDKWSSKQL bmy_12478T0/1-928 --GPFQSQKK NLFHKIVSKY KHKKEKPNVP EKVEKDHSLG SGDKWSNKQL BACU012311/1-974 SKGPFQSQKK NLFHKIVSKY KHKKEKPNVP EK-------G SGDKWSNKQL 801 850 ENSTTRP00000012509/1-942 FLDAIHPTEA ---------- ---------- ---------- ---------- ENSP00000319974/1-941 FLDAIHPTEA ---------- ---------- ---------- ---------- ENSBTAP00000009058/1-942 FLDAIHPTEA ---------- ---------- ---------- ---------- bmy_12478T0/1-928 FLDAIHPTEA FFVFLRYIYC LISNVYLRIH LLMSTTRGEG ERRTPKEMSK BACU012311/1-974 FLDAIHPTEA ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000012509/1-942 ---------- ---------I FSEDKNTTEP AYKVKNAPSI PSTPEPTTTQ ENSP00000319974/1-941 ---------- ---------I FSEDRNTMEP VHKVKNIPSI FNTPEPTTTQ ENSBTAP00000009058/1-942 ---------- ---------I FSEDKNTTEP AYKVKNALSI PNTPEPTTTQ bmy_12478T0/1-928 KRHSVPNPFE LGAKSLVATI FSEDKNTTEP AYKVKNAPSI PNAPEPTTTQ BACU012311/1-974 ---------- ---------I FSEDKNTTEP AYKVKNAPSI PNTPEPTTTQ 901 950 ENSTTRP00000012509/1-942 EPLVGSQKRK ARKTKITHLV RTADGRVSPA GGTL------ --------DD ENSP00000319974/1-941 EPLVGSQKRK ARKTKITHLV RTADGRVSPA GGTL------ --------DD ENSBTAP00000009058/1-942 EPLVGSQKRK ARKTKITHLV RTADGRVSPA GGTL------ --------DD bmy_12478T0/1-928 EPLVGSQKRK ARKTKITHLV RTADGRVSPA GGTLGQSDPL VMNFPFVTDD BACU012311/1-974 EPLVGSQKRK ARKTKITHLV RTADGRVSPA GGTL------ --------DD 951 1000 ENSTTRP00000012509/1-942 KPKEQLQRSL AKVTETGCND ECSHNREATE TRSSTPEMPA VSAFFSLAAL ENSP00000319974/1-941 KPKEQLQRSL PKATETDCND KCSHNTEVGE TRSSTPEMPA VSAFFSLAAL ENSBTAP00000009058/1-942 KPREQLQRSL PKVTETGCSD ECSHNREAAE TRSSTPEMPA VSAFFSLAAL bmy_12478T0/1-928 KPKEQLQRSL AKVTETGCND ECSHNREATE TRSSTPEMPA VSAFFSLAAL BACU012311/1-974 KPKEQLPRSL AKVTETGCND ECSHNREATE TRSSTPEMPA VSAFFSLAAL 1001 1050 ENSTTRP00000012509/1-942 AEVAAMENVH R--------- ---------- ---------- ---------- ENSP00000319974/1-941 AEVAAMENVH R--------- ---------- ---------- ---------- ENSBTAP00000009058/1-942 AEVAAMENVH R--------- ---------- ---------- ---------- bmy_12478T0/1-928 AEVAAMENVH RLAVGNLAAL GSGDPVQLHP LSRNTGGDSD MEAQIILSDV BACU012311/1-974 AEVAAMENVH S--------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000012509/1-942 ---------- ---------- ---------- ---------- ---------- ENSP00000319974/1-941 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009058/1-942 ---------- ---------- ---------- ---------- ---------- bmy_12478T0/1-928 ICDIFHNDWG SGDFCLRGFN KTRCCALQTI VGQSKVRDQL RSPMMDSQKK BACU012311/1-974 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000012509/1-942 ---------- ---------- ---------- ---------- ---------- ENSP00000319974/1-941 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009058/1-942 ---------- ---------- ---------- ---------- ---------- bmy_12478T0/1-928 CHRLLYLFLA LTSEAPFNCK TLCFTYYPSL VFTERCYSGG GMGNINVLET BACU012311/1-974 ---------- ---------- ---------- ---------- ------VLET 1151 1200 ENSTTRP00000012509/1-942 -GQRSTPLTH D--------- GQPKEMPQAP VLISCADQ-- ---------- ENSP00000319974/1-941 -GQRSTPLTH D--------- GQPKEMPQAP VLISCADQ-- ---------- ENSBTAP00000009058/1-942 -GQRSTPLTH D--------- GQPKEMPQAP VLISCADQ-- ---------- bmy_12478T0/1-928 SGWRLEASIH TTKGKHRRFM GEEEGSRARP GVITCEGEVG VYVMLATIFR BACU012311/1-974 SGWRLEASIH TTKGKRRRFV GEEEGSRARP GVITREGEVG VYVTL----- 1201 1250 ENSTTRP00000012509/1-942 ---------- ---------- ---------- ---------- ---------- ENSP00000319974/1-941 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009058/1-942 ---------- ---------- ---------- ---------- ---------- bmy_12478T0/1-928 RSVLTSQTTF SRENNVLLKM GIILFRLTNI ILKIQKETVV QFILADTSGE BACU012311/1-974 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000012509/1-942 ---------- --------- ENSP00000319974/1-941 ---------- --------- ENSBTAP00000009058/1-942 ---------- --------- bmy_12478T0/1-928 VFRISENDKN VIKAFGDDP BACU012311/1-974 ---------- ---------