KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:05 2014 Check: 00 .. Name: ENSP00000327251/1-1153 Len: 1160 Check: 4408 Weight: 1.00 Name: ENSTTRP00000002190/1-933 Len: 1160 Check: 436 Weight: 1.00 Name: ENSBTAP00000009062/1-1156 Len: 1160 Check: 9176 Weight: 1.00 Name: bmy_15632T0/1-907 Len: 1160 Check: 536 Weight: 1.00 Name: BACU010517/1-1160 Len: 1160 Check: 2365 Weight: 1.00 // 1 50 ENSP00000327251/1-1153 MACPWKFLFK TKFHQYAMNG EKDINNNVEK APCATSSPVT QDDLQYHNLS ENSTTRP00000002190/1-933 MACPWQFLFK AKSYKFDLTE EMDINNNVDK ARQPPSSPVT QDDPKCHNLG ENSBTAP00000009062/1-1156 MACPWQFLFK IKSQKVDLAT ELDINNNVGK FYQPPSSPVT QDDPKRHSPG bmy_15632T0/1-907 MACPWQFLFK AKSYKFDLTE EIDINNNVEK ARQPLSSPVT QDDPKCHSLG BACU010517/1-1160 MACPWQFLFK AKSYKFDLTE EIDINNNVEK AHQPLSSPVT QDDPKCHSLG 51 100 ENSP00000327251/1-1153 KQQNESPQPL VETGKKSPES LVKLDATPLS SPRHVRIKNW GSGMTFQDTL ENSTTRP00000002190/1-933 KHRNESPQPL TGTAKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000009062/1-1156 KHGNESPQPL TGTVKTSPES LSKLDAPPSA CPRHVRIKNW GSGVTFQDTL bmy_15632T0/1-907 KHRNESSQPL TGTAK----- ---------- ---------- ---------- BACU010517/1-1160 KHRNESSQPL TGTAKQSPES LVKPAAPPSA CPRHVRIKNW GSGMTFQDTL 101 150 ENSP00000327251/1-1153 HHKAKGILTC RSKSCLGSIM TPKSLTRGPR DKPTPPDELL PQAIEFVNQY ENSTTRP00000002190/1-933 XXXXXXDLAC KSRSCLGAIM NPKSLTIGPR DKPTLPDELL PQAIEFVNQY ENSBTAP00000009062/1-1156 HQKAKGDLSC KSKSCLASIM NPKSLTIGPR DKPTPPDELL PQAIEFVNQY bmy_15632T0/1-907 ------DLAC KSRSCLGAIM NPKSLTIGPR DKPTLPDELL PQAIEFVNQY BACU010517/1-1160 HHKAKRDLAC KSRSCLGAIM NPKSLTIGPR DKPTLPEELL PQAIEFVNQY 151 200 ENSP00000327251/1-1153 YGSFKEAKIE EHLARVEAVT KEIETTGTYQ LTGDELIFAT KQAWRNAPRC ENSTTRP00000002190/1-933 YGSFKEAKIE EHLARVEAVT KEIETTGTYQ LTGDELIFAT KQAWRNAPRC ENSBTAP00000009062/1-1156 YGSFKEAKIE EHLARVEAVT KEIETTGTYQ LTGDELIFAT KQAWRNAPRC bmy_15632T0/1-907 YGSFKEAKIE EHLARVEAVT KEIETTGTYQ LTGDELIFAT KQAWRNAPRC BACU010517/1-1160 YGSFKEAKIE EHLARVEAVT KEIETTGTYQ LTGDELIFAT KQAWRNAPRC 201 250 ENSP00000327251/1-1153 IGRIQWSNLQ VFDARSCSTA REMFEHICRH VRYSTNNGNI RSAITVFPQR ENSTTRP00000002190/1-933 IGRIQWSNLQ VFDARSCSTA QEMFEHICRH LRYATNNGNI RSAITVFPQR ENSBTAP00000009062/1-1156 IGRIQWSNLQ VFDARSCSTA QEMFEHICRH VRYATNNGNI RSAITVFPQR bmy_15632T0/1-907 IGRIQWSSLQ VFDARSCSTA QEMFEHICRH LRYATNSGNI RMAITVFPQR BACU010517/1-1160 IGRIQWSNLQ VFDARSCSTA QEMFEHICRH LRYATNSGNI RLAITVFPQR 251 300 ENSP00000327251/1-1153 SDGKHDFRVW NAQLIRYAGY QMPDGSIRGD PANVEFTQLC IDLGWKPKYG ENSTTRP00000002190/1-933 SDGKHDFRVW NAQLIRYAGY QMPDGTIRGD PASVELTQLC IDLGWKPKYG ENSBTAP00000009062/1-1156 SDGKHDFRVW NAQLIRYAGY QMPDGSIRGD PANVEFTQLC IDLGWKPKYG bmy_15632T0/1-907 SDGKHDFRVW NAQLIQYAGY QMPDGTIRGD PASVEFTQLC IDLGWKPKYG BACU010517/1-1160 SDGKHDFRVW NAQLIQYAGY QMPDGAIRGD PASVEFTQLC IDLGWKPKYG 301 350 ENSP00000327251/1-1153 RFDVVPLVLQ ANGRDPELFE IPPDLVLEVA MEHPKYEWFR ELELKWYALP ENSTTRP00000002190/1-933 RFDVVPLVLQ ADGRDPELFE IPPDLVFEVP MEHPKYEWFR ELELKWYALP ENSBTAP00000009062/1-1156 RFDVLPLVLQ ADGRDPELFE IPPDLVLEVP MEHPRYEWFR ELELKWYALP bmy_15632T0/1-907 RFDVVPLVLQ ADGHDPELFE IPPDLVFEVP MEHPKYEWFR ELELKWYALP BACU010517/1-1160 RFDVVPLVLQ ADGQDPELFE IPPDLVFEVP MEHPKYEWFR ELELKWYALP 351 400 ENSP00000327251/1-1153 AVANMLLEVG GLEFPGCPFN GWYMGTEIGV RDFCDVQRYN ILEEVGRRMG ENSTTRP00000002190/1-933 AVANMLLEVG GLEFPGCPFN GWYMGTEIGV RDFCDVQRYN ILEEVGRRMG ENSBTAP00000009062/1-1156 AVANMLLEVG GLEFPGCPFN GWYMGTEVGV RDFCDAQRYN ILEEVGRRMG bmy_15632T0/1-907 AVANMLLEVG GLEFPGCPFN GWYMGTEIGV RDFCDIQRYN ILE------- BACU010517/1-1160 AVANMLLEVG GLEFPGCPFN GWYMGTEIGV RDFCDVQRYN ILEEVGRRMG 401 450 ENSP00000327251/1-1153 LETHKLASLW KDQAVVEINI AVLHSFQ--- KQNVTIMDHH SAAESFMKYM ENSTTRP00000002190/1-933 LETHKVASLW KDRAVIEINV AVLHSFQ--- KHNVTIMDHH SAAESFMKYM ENSBTAP00000009062/1-1156 LETHKVASLW KDRAVVEINV AVLHSFQ--- KQNVTIMDHH SAAESFMKYM bmy_15632T0/1-907 ---------- ---------- ---------- ---------- ---------- BACU010517/1-1160 LETHKVASLW KDRAVIEINV AVLHSFQARL KHNVTITDHH SAAESFMKYM 451 500 ENSP00000327251/1-1153 QNEYRSRGGC PADWIWLVPP MSGSITPVFH QEMLNYVLSP FYYYQVEAWK ENSTTRP00000002190/1-933 QNEYRSRGGC PADWIWLVPP ISGSITPMFH QEMLNYVLSP FYYYQVEAWK ENSBTAP00000009062/1-1156 QNEYRSRGGC PADWIWLVPP ISGSITPVFH QEMLNYVLSP FYYYQVEPWK bmy_15632T0/1-907 ---------- ---------- ---------- ---------- ---------- BACU010517/1-1160 QNEYRSRGGC PADWIWLVPP ISGSITPVFH QEMLNYILSP FYYYQVAAWK 501 550 ENSP00000327251/1-1153 THVWQDEKRR PKRREIPLKV LVKAVLFACM LMRKTMASRV RVTILFATET ENSTTRP00000002190/1-933 THVWQDERRR PRRREIRFKV LVKAVLFASV LMREKMASRV RATILFATET ENSBTAP00000009062/1-1156 THVWQDERRR PQRREIRFKV LVKAVFFASV LMHKTMASRV RATILFATET bmy_15632T0/1-907 ---------- ---------- ---------- ---------- ---------- BACU010517/1-1160 THVWQDERRR PRRREIRFKV LVKAVLFASV LMRERMASRV RATILFATET 551 600 ENSP00000327251/1-1153 GKSEALAWDL GALFSCAFNP KVVCMDKYRL SCLEEERLLL VVTSTFGNGD ENSTTRP00000002190/1-933 GRSETLARDL GALFSCAFNP KVLCMDEYRL SHLEEEQLLL VVTSTFGNGD ENSBTAP00000009062/1-1156 GRSETLAQDL GALFSCAFNP KVLCMDQYQL SHLEEEQLLL VVTSTFGNGD bmy_15632T0/1-907 ---------- ---------- -VLCMDEYKL SHLEEEELLL VVTSTFGNGD BACU010517/1-1160 GRSETLAQDL GALFSCAFNP KVLCMDEYKL SHLEEEELLL VVTSTFGNGD 601 650 ENSP00000327251/1-1153 CPGNGEKLKK SLFMLKELNN KFRYAVFGLG SSMYPRFCAF AHDIDQKLSH ENSTTRP00000002190/1-933 SPGNGEKLKK SLFMLKELTN KFRYAVFGLG SSMYPQFCAF AHDIDQKLSQ ENSBTAP00000009062/1-1156 SPGNGEKLKK SLLMLKELTN TFRYAVFGLG SSMYPQFCAF AHDIDQKLSQ bmy_15632T0/1-907 SPSNGEKLKK SLFMLKELTN KFRYAVFGLG SSMYPQFCAF AHDIDQRLSQ BACU010517/1-1160 SPGNGEKLKK SLFMLKELTN KFRYAVFGLG SSMYPQFCAF AHDIDQKLSQ 651 700 ENSP00000327251/1-1153 LGASQLTPMG EGDELSGQED AFRSWAVQTF KAACETFDVR GKQHIQIPKL ENSTTRP00000002190/1-933 LGASQIAPTG EGDELSGQEE AFRGWAVQTF KAACETFDVR GKHHIQIPKL ENSBTAP00000009062/1-1156 LGASQLVPTG EGDELSGQEE AFRSWAVQTF KAACETFDVS GKHHIEIPKL bmy_15632T0/1-907 LGASQLAPTG EGDELSGQEE AFRGWAVQTF KAACETFDVR GKHHIQIPKL BACU010517/1-1160 LGASQLAPTG EGDELSGQEE AFRAWAVQTF KAACETFDVR GKHHIQIPKL 701 750 ENSP00000327251/1-1153 YTSNVTWDPH HYRLVQDSQP LDLSKALSSM HAKNVFTMRL KSRQNLQSPT ENSTTRP00000002190/1-933 YTANVTWDLH HYRLVQDSQP LDLNKALGSM HAKHVFTMRL KSQRNLQSPK ENSBTAP00000009062/1-1156 YTSNVTWDPQ HYRLVQDSEP LDLNKALSSM HAKHVFTMRL KSQQNLQSPK bmy_15632T0/1-907 YTASVTWDMH HYRLVQDSQP LDLNKALSSM HAKHVFTMRL KSRQNLQSPK BACU010517/1-1160 YTATVTWDLH HYRLVQDSQP LDLNKALSSM HAKHVFTMRL KSRQNLQSPK 751 800 ENSP00000327251/1-1153 SSRATILVEL SCEDGQGLNY LPGEHLGVCP GNQPALVQGI LERVVDGPTP ENSTTRP00000002190/1-933 SSRTTLLVEL SCEGSQGPSY LPGEHLGVFP GNQPALVQGI LERVVDGPAP ENSBTAP00000009062/1-1156 SSRTTLLVEL SCEGSQAPSY LPGEHLGVFP CNQPALVQGI LERVVDGPAP bmy_15632T0/1-907 SSRTTLLVEL SCEGSQGPSY LPGEHLGVFP GNQPALVQGI LERVVDGPAP BACU010517/1-1160 SSRTTLLVEL SYEGSQGPSY LPGEHLGVFP GNQPALVQGI LERVVDGPAP 801 850 ENSP00000327251/1-1153 HQTVRLEALD ESGSYWVSDK RLPPCSLSQA LTYFLDITTP PTQLLLQKLA ENSTTRP00000002190/1-933 HQPMRLETLC ENXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000009062/1-1156 HQPVRLETLC ENGSYWVKDK RLPPCSLSQA LTYFLDITTP PTQLLLRKLA bmy_15632T0/1-907 HQPMRLETLC ENGSYWVRDK RLPTCSLSQA LTYFLDITTP PTQLLLQKLA BACU010517/1-1160 DQPMRLETLC ENGSYWVRDK RLPICSLSQA LTYFLDITTP PTQLLLQKLA 851 900 ENSP00000327251/1-1153 QVATEEPERQ RLEALCQPSE YSKWKFTNSP TFLEVLEEFP SLRVSAGFLL ENSTTRP00000002190/1-933 XXXXXXXXXX XXXXXXXPSD YNKWKFTNSP TFLEVLEEFP SLRVSASFLL ENSBTAP00000009062/1-1156 QLATEEAEKQ RLETLCQPSD YNKWKFTNSP TFLEVLEEFP SLRVSASFLL bmy_15632T0/1-907 QLATDEAERQ RLETLCQPSD YNMWKFTNSP TFLEVLEEFP SLRVPASFLL BACU010517/1-1160 QLATDEAERQ RLETLCQPSN YNTWKFTNSP TFLEVLEEFP SLRVPASFLL 901 950 ENSP00000327251/1-1153 SQLPILKPRF YSISSSRDHT PTEIHLTVAV VTYHTRDGQG PLHHGVCSTW ENSTTRP00000002190/1-933 SQLPVLKPRY YSISSSRDHA PTEIHLTVAV LTYRTR---- ---------- ENSBTAP00000009062/1-1156 SQLPILKPRY YSISSSRDLT PTEIHLTVAV LTYRTRDGQG PLHHGVCSTW bmy_15632T0/1-907 SQLPVLKPRY YSISSSRDHT PTEIHLTVAV LT-------- ---------- BACU010517/1-1160 SQLPVLKPRY YSISSSRDHT PTEIHLTVAV LTYRTRDGQG PLHHGVCSTW 951 1000 ENSP00000327251/1-1153 LNSLKPQDPV PCFVRNASGF HLPEDPSHPC ILIGPGTGIA PFRSFWQQRL ENSTTRP00000002190/1-933 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009062/1-1156 LSSLKPQDPV PCFVRSASGF QLPEDRSRPC ILIGPGTGIA PFRSFWQQRL bmy_15632T0/1-907 ---------- ------ASGF QLPEDPSHPC ILIGPGTGIA PFRSFWQQRL BACU010517/1-1160 LSNLKPQDLV PCFVRSASGF QLPEDPSHPC ILIGPGTGIA PFRSFWQQRL 1001 1050 ENSP00000327251/1-1153 HDSQHKGVRG GRMTLVFGCR RPDEDHIYQE EMLEMAQKGV LHAVHTAYSR ENSTTRP00000002190/1-933 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009062/1-1156 HEAEHKGLQG GRMTLVFGCR RPEEDHLYWE EMLEMARKGV LHEVHTAYSR bmy_15632T0/1-907 HDAEHKGLQS GRMTLVFGCR RPDEDHLYRE EMLEMTRKGV LHEVHTAYSR BACU010517/1-1160 HDAEHNGLQS GRMTLVFGCR HPDEDHIYRE EMLEMTRKGV LHEVHTAYSR 1051 1100 ENSP00000327251/1-1153 LPGKPKVYVQ DILRQQLASE VLRVLHKEPG HLYVCGDVRM ARDVAHTLKQ ENSTTRP00000002190/1-933 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009062/1-1156 LPDQPKVYVQ DILRQRLAGE VLRVLHEEQG HLYVCGDVRM ARDVARTLKQ bmy_15632T0/1-907 LPDQPKVYVQ DILRQQLADE VLRVLHEDQG HLYVCGDVRM ARDVVRTLKQ BACU010517/1-1160 LPDQPKVYVQ DILRQQLADE VLRVLHEERG HLYVCGDVRM ARDVARTLKQ 1101 1150 ENSP00000327251/1-1153 LVAAKLKLNE EQVEDYFFQL KSQKRYHEDI FGAVFPYEAK KDRVAVQPSS ENSTTRP00000002190/1-933 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009062/1-1156 LMATALSLNE EQVEDYFFQL KNQKRYHEDI FGAVFPYEVK KDGAAGLPSN bmy_15632T0/1-907 LVATALSLTE EQVEDYFFQL KSQKRYHEDI FGAVFPYEVK KDGAAGLPSN BACU010517/1-1160 LVATALSLTE EQVEDYFFQL KSQKRYHEDI FGAVFPYEVK KDGAAELPSN 1151 1200 ENSP00000327251/1-1153 LEMSAL---- ENSTTRP00000002190/1-933 ---------- ENSBTAP00000009062/1-1156 PRAPGAHRS- bmy_15632T0/1-907 TRAPSAHRRS BACU010517/1-1160 TRAPSAHRRS