KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:06 2014 Check: 00 .. Name: ENSP00000355890/1-1512 Len: 1519 Check: 6054 Weight: 1.00 Name: ENSBTAP00000009064/1-1511 Len: 1519 Check: 5775 Weight: 1.00 Name: ENSTTRP00000012350/1-1511 Len: 1519 Check: 6320 Weight: 1.00 Name: bmy_17009T0/1-1481 Len: 1519 Check: 7747 Weight: 1.00 Name: BACU004034/1-1511 Len: 1519 Check: 6801 Weight: 1.00 // 1 50 ENSP00000355890/1-1512 MATLSLTVNS GDPPLGALLA VEHVKDDVSI SVEEGKENIL HVSENVIFTD ENSBTAP00000009064/1-1511 MATLCLTVNS GDPPLGALLA VEHVKDNVSI SVEEGKENIL HVSENVVFTD ENSTTRP00000012350/1-1511 MATLCLTVNS GDPPLGALLA VEHVKDNVSI SVEEGKENIL HVSENVVFTD bmy_17009T0/1-1481 MATLCLTVNS GDPPLGALLA VEHVKDNVSI SVXDGKENIL RVSENVVFTD BACU004034/1-1511 MATLCLTVNS GDPPLGALLA VEHVKGKASX XXXX-KENIL RVSENVVFTD 51 100 ENSP00000355890/1-1512 VNSILRYLAR VATTAGLYGS NLMEHTEIDH WLEFSATKLS SCDSFTSTIN ENSBTAP00000009064/1-1511 INSILRYLAR IATAAGLYGS NLLEHTEIDH WLEFSATKLS SCDLFTSAVN ENSTTRP00000012350/1-1511 INSILRYLAR IATTAGLYGS NLLEHTEIDH WLEFSATKLS SCDLFTSAIN bmy_17009T0/1-1481 INSILRYLAR XATTAGLYGS NLLEHTEIDH WLEFSATKLS SCDLFTSAIN BACU004034/1-1511 INSILRYLAR IATTAGLYGS NLLEHTEIDH WLEFSATKLS SCDLFTSAIN 101 150 ENSP00000355890/1-1512 ELNHCLSLRT YLVGNSLSLA DLCVWATLKG NAAWQEQLKQ KKAPVHVKRW ENSBTAP00000009064/1-1511 ELNHCLSLRT YLVGNSLSLA DLCVWATLKG NAAWQEQLGQ NKAPVHVKRW ENSTTRP00000012350/1-1511 ELSHCLSLRT YLVGNSLSLA DLCVWATLKG NAAWQEQLEQ NKAPVHVKRW bmy_17009T0/1-1481 ELNHCLSLRT YLVGNSLSLA DLCVWATLKG NAAWQEQLEQ SKAPVHVKRW BACU004034/1-1511 ELNHCLSLRT YLAGNSLSLA DLCVWATLKG NAAWQEQLEQ SKAPVHVKRW 151 200 ENSP00000355890/1-1512 FGFLEAQQAF QSVGTKWDVS TTKARVAPEK KQDVGKFVEL PGAEMGKVTV ENSBTAP00000009064/1-1511 FGFLEAQQAF QSVGTKWNVS ATKAKVVPEK KQDVGKFVEL PGAEMGKVTV ENSTTRP00000012350/1-1511 FGFLEAQQAF QSVGTKWNVS TSKAKVVPEK KQDVGKFVEL PGAEMGKVTV bmy_17009T0/1-1481 FGFLEAQQAF QSVGTKWNVS TTKAKV---- ---------L PGAEMGKVTV BACU004034/1-1511 FGFLEAQQAF QSVGTKWNVS TTKAKVVPEK KQDIGKFVEL PGAEMGKVTV 201 250 ENSP00000355890/1-1512 RFPPEASGYL HIGHAKAALL NQHYQVNFKG KLIMRFDDTN PEKEKEDFEK ENSBTAP00000009064/1-1511 RFPPEASGYL HIGHAKAALL NQHYQVNFKG KLIMRFDDTN PEKEKEDFEK ENSTTRP00000012350/1-1511 RFPPEASGYL HIGHAKAALL NQHYQVNFKG KLIMRFDDTN PEKEKEDFEK bmy_17009T0/1-1481 RFPPEASGYL HIGHAKAALL NQHYQVNFKG KLIMRFDDTN PEKEKEDFEK BACU004034/1-1511 RFPPEASGYL HIGHAKAALL NQHYQVNFKG KLIMRFDDTN PEKEKEDFEK 251 300 ENSP00000355890/1-1512 VILEDVAMLH IKPDQFTYTS DHFETIMKYA EKLIQEGKAY VDDTPAEQMK ENSBTAP00000009064/1-1511 VILEDVAMLH IKPDQFTYTS DHFETIMKYA EKLIQEGKAY VDDTPAEQMK ENSTTRP00000012350/1-1511 VILEDVAMLH IKPDQFTYTS DHFETIMKYA EKLIQEGKAY VDDTPAEQMK bmy_17009T0/1-1481 VILEDVAMLH IKPDQFTYTS DHFETIMKYA EKLIQEGKAY VDDTPAEQMK BACU004034/1-1511 VILEDVAMLH IKPDQFTYTS DHFATIMKYA EKLIQEGKAY VDDTPAEQMK 301 350 ENSP00000355890/1-1512 AEREQRIDSK HRKNPIEKNL QMWEEMKKGS QFGQSCCLRA KIDMSSNNGC ENSBTAP00000009064/1-1511 AEREQRIESK HRENSVEKNL QMWEEMKKGS QFGQSCCLRA KIDMSSNKGC ENSTTRP00000012350/1-1511 AEREQRIESK QRKNSVEKNL QMWEEMKKGS QFGQSCCLRA KIDMSSNNGC bmy_17009T0/1-1481 AE-------- ----PVEKNL QMWEEMKKGS QFGQSCCLRA KIDMSSNNGC BACU004034/1-1511 AEREQRIESK HRKNSVEKNL QMWEEMKKGS QFGQSCCLRA KIDMSSNNGC 351 400 ENSP00000355890/1-1512 MRDPTLYRCK IQPHPRTGNK YNVYPTYDFA CPIVDSIEGV THALRTTEYH ENSBTAP00000009064/1-1511 MRDPTLYRCK IKAHPRTGNK YNVYPTYDFA CPIVDSIEGV THALRTTEYH ENSTTRP00000012350/1-1511 MRDPTLYRCK IQPHPRTGNK YNVYPTYDFA CPIVDSIEGV THALRTTEYH bmy_17009T0/1-1481 MRDPTLYRCK IQPHPRTGNK YNVYPTYDFA CPIVDSIEGV THALRTTEYH BACU004034/1-1511 MRDPTLYRCK IQPHPRTGNK YSVYPTYDFA CPIVDSIEGV THALRTTEYH 401 450 ENSP00000355890/1-1512 DRDEQFYWII EALGIRKPYI WEYSRLNLNN TVLSKRKLTW FVNEGLVDGW ENSBTAP00000009064/1-1511 DRDEQFYWII EALGIRKPFI WEYSRLNLNN TVLSKRKLTW FVNEGLVDGW ENSTTRP00000012350/1-1511 DRDEQFYWII EALGLRKPYI WEYSRLNLNN TVLSKRKLTW FVNEGLVDGW bmy_17009T0/1-1481 DRDEQFYWII EALGIRKPYI WEYSRLNLNN TVLSKRKLTW FVNEGLVDGW BACU004034/1-1511 DRDEQFYWII EALGIRKPYI WEYSRLNLNN TVLSKRKLTW FVNEGLVDGW 451 500 ENSP00000355890/1-1512 DDPRFPTVRG VLRRGMTVEG LKQFIAAQGS SRSVVNMEWD KIWAFN---- ENSBTAP00000009064/1-1511 DDPRFPTVRG VLRRGMTVEG LKQFIAAQGS SRSVVNMEWD KIWAFN---- ENSTTRP00000012350/1-1511 DDPRFPTVRG VLRRGMTVEG LKQFIAAQGS SRSVVNMEWD KIWAFN---- bmy_17009T0/1-1481 DDPRFPTVRG VLRRGMTVEG LKQFIAAQGS SRSVVNMEWD KIWAFNKKLR BACU004034/1-1511 DDPRFPTVRG VLRRGMTVEG LKQFIAAQGS SRSVVNMEWD KIWAFN---- 501 550 ENSP00000355890/1-1512 ---KKVIDPV APRYVALLKK EVIPVNVPEA QEEMKEVAKH PKNPEVGLKP ENSBTAP00000009064/1-1511 ---KKVIDPV APRYVALLKK EVVPVNIPEA QEEMKEVAKH PKNPDVGLKP ENSTTRP00000012350/1-1511 ---KKVIDPV APRYVALLKK EVIPVDIPEA QEEMKEVARH PKNPDVGLKP bmy_17009T0/1-1481 ALCKKVIDPV APRYXALLKK EVIPVNIPEA QEEMKEVAKH PKNPDVGLKP BACU004034/1-1511 ---KKVIDPV APRYVALLKE EVVPVNIPEA PEEAKEVARH PKNPDVGLKP 551 600 ENSP00000355890/1-1512 VWYSPKVFIE GADAETFSEG EMVTFINWGN LNITKIHKNA DGKIISLDAK ENSBTAP00000009064/1-1511 VWYSSKVFIE GADAETLSEG EMVTFINWGN INITKIHKSA EGKIVSLDAK ENSTTRP00000012350/1-1511 VWYSPKVFIE GADAETLSEG ETVTFINWGN INITKIHRNA EGKIVSLDAK bmy_17009T0/1-1481 VWYSPKVFIE GADAETLSEG ETVTFINWGN INITKIHKNA EGKIVSLDAK BACU004034/1-1511 VWYSPKVFIE GADAETLSEG ETVTFINWGN INITKIHKNA EGKIVSLDAK 601 650 ENSP00000355890/1-1512 LNLENKDYKK TTKVTWLAET THALPIPVIC VTYEHLITKP VLGKDEDFKQ ENSBTAP00000009064/1-1511 LNLENKDYKK TTKITWLAET EHALPVPAIC VTYEHLITKP VLGKDEDFKQ ENSTTRP00000012350/1-1511 LNLE-KDYKK TTKITGLAET ERALPVPAIC VTYEHLITKP VLGKDEDFKQ bmy_17009T0/1-1481 LNLENKDYKK TTKITWLAET ERALPVPAIC VTYEHLITKP VLGKDEDFKQ BACU004034/1-1511 LNLENKDYKK TTKITWLAET ERALPVPAIC VTYEHLITKP VLGKDEDFKQ 651 700 ENSP00000355890/1-1512 YVNKNSKHEE LMLGDPCLKD LKKGDIIQLQ RRGFFICDQP YEPVSPYSCK ENSBTAP00000009064/1-1511 YVNKNSKHEE LMLGDPCLKD LKKGDIIQLQ RRGFFICDQP YEPVSPYSCI ENSTTRP00000012350/1-1511 YVNKNSKHEE LMLGDPCLKD LKKGDIIQLQ RRGFFICDQP YEPISPYSCI bmy_17009T0/1-1481 YINKNSKHEE LMLGDPCLKD LKKGDIIQLQ RRGFFICDQP YEPVSPYSCI BACU004034/1-1511 YVNKNSKHEE LMLGDPCLKD LKKGDIIQLQ RRGFFICDQP YEPVSPYSCI 701 750 ENSP00000355890/1-1512 EAPCVLIYIP DGHTKEMPTS GSKEKTKVEA TKNETSAPFK ERPTPSLNNN ENSBTAP00000009064/1-1511 EAPCILIYIP DGHTKEMPTS GSKEKTKVET TKNEASTPLK TRSAPSLST- ENSTTRP00000012350/1-1511 EAPCILIYIP DGHTKEMPTS GSKEKTKVET TKNEAATPLK TMSAPSLNNT bmy_17009T0/1-1481 EAPCILIYIP DGHTKEMPTS GSKEKTKVET TKNEAATPLK TRSAPSLNNT BACU004034/1-1511 EAPCILIYIP DGHTKEMPTS GSKEKTKVET TKNEAATPLK TRSAPSLNNT 751 800 ENSP00000355890/1-1512 CTTSEDSLVL YNRVAVQGDV VRELKAKKAP KEDVDAAVKQ LLSLKAEYKE ENSBTAP00000009064/1-1511 CATSEDSLVL YNRVAAQGDV VRELKAKKAT KEDIDAAVKQ LLALKAEYKE ENSTTRP00000012350/1-1511 CATSEDSLVL YNRVAVQGDV VRELKAKKAA KEDIDAAVKQ LLALKAEYKE bmy_17009T0/1-1481 CATSEDSLVL YNRVAVQGDV VRELKAKKAA KEDIDAAVKQ LLALKAEYKE BACU004034/1-1511 CATSEDSLVL YNRVAVQGDV VRELKAKKAA KEDIDAAVKQ LLSLKAEYKE 801 850 ENSP00000355890/1-1512 KTGQEYKPGN PPAEIGQNIS SNSSASILES KSLYDEVAAQ GEVVRKLKAE ENSBTAP00000009064/1-1511 KTGQEYKPGN PPAAVGQNIS SKSSSNIVES KSLYDEVAAQ GEVVRKLKAE ENSTTRP00000012350/1-1511 KTGQEYKLGN PPAATVQNVS STSSSDILES KSLYDEVAAQ GEVVRKLKAE bmy_17009T0/1-1481 KTGQEYKLGN PPAAIVQNVS S-TSSDILES KSLYDEVAAQ GEVVRKLKAE BACU004034/1-1511 KTGQEYKLGN PPAAIIQNVS SKSSSDILES KSLYDEVAAQ GEVVRTLKAE 851 900 ENSP00000355890/1-1512 KSPKAKINEA VECLLSLKAQ YKEKTGKEYI PGQPPLSQSS DSSPTRNSEP ENSBTAP00000009064/1-1511 KAPKAKVNEA VECLLSLKAQ YKEKTGKEYV PGQPPSSQSS DSSPPRSSEP ENSTTRP00000012350/1-1511 KAPKAKVNEA VECLLSLKAQ YKEKTGKEYV PGQPPSSQSS DSSPSRSSEP bmy_17009T0/1-1481 KAPKAKVNEA VECLLSLKAQ YKEKTGKEYV PGQPPSSQSS DSSPSRSSEP BACU004034/1-1511 KAPKAKVNEA VECLLSLKAQ YKEKTGNEYI PGQPTSSQSS DSSPSRSSEP 901 950 ENSP00000355890/1-1512 AGLETPEAKV LFDKVASQGE VVRKLKTEKA PKDQVDIAVQ ELLQLKAQYK ENSBTAP00000009064/1-1511 SGPETPEAKL LFDKVASQGE VVRKLKAEKA SKDQVDTAVQ ELLQLKAQYK ENSTTRP00000012350/1-1511 RGPETPEAKS LFDKVATQGE VVRKLKAEKA SKDQVDTAVQ ELLQLKAQYK bmy_17009T0/1-1481 RGPETPEAKS LFDKVATQGE ---------- --DQVDTAVQ ELLQLKAQYK BACU004034/1-1511 RGPETPEAKS LFDKVATQGE VVRKLKAEKA SKDQVDTAVH ELLQLKAQYK 951 1000 ENSP00000355890/1-1512 SLIGVEYKPV SATGAEDKDK KKKEKENKSE KQNKPQKQND GQRKDPSKNQ ENSBTAP00000009064/1-1511 SLAGVDYKPV SATGAEEKDK KKKEKENKSE KQNKPQKQND SQKKDSFKTQ ENSTTRP00000012350/1-1511 SLTGVDYKPV SANGAEEKDK KKKEKENKSE KQNKTQKQND GQKKDSSKNQ bmy_17009T0/1-1481 SLTGVDYKPV SANGAEEKDK KKKEKENKSE KQNKTQKQND GQKKDSSKNQ BACU004034/1-1511 SLTGVDYKPV SANGAEEKDK KKKEKENKSE KQNKTQKQND GQKKDSSKNQ 1001 1050 ENSP00000355890/1-1512 GGGLSSSGAG EGQGPKKQTR LGLEAKKEEN LADWYSQVIT KSEMIEYHDI ENSBTAP00000009064/1-1511 GSGLSPNGAG EGQGPKKQTR LGLEARKEDS LADWYSQVIT KSEMIEYYDV ENSTTRP00000012350/1-1511 GSGLSSSGPG EGQGPKKQTR LGLEAKKEEN LADWYSQVIT KSEMIEYYDV bmy_17009T0/1-1481 GSGLSSSGPG EGQGPKKQTR LGLEAKKEEN LADWYSQVIT KSEMIEYYDI BACU004034/1-1511 GSGLSSGGPG EGQGPKKQTR LGLEAKKEEN LADWYSQVIT KSEMIEYYDI 1051 1100 ENSP00000355890/1-1512 SGCYILRPWA YAIWEAIKDF FDAEIKKLGV ENCYFPMFVS QSALEKEKTH ENSBTAP00000009064/1-1511 SGCYILRPWA YSIWESIKDF FDAEIKKLGV ENCYFPMFVS QGALEKEKTH ENSTTRP00000012350/1-1511 SGCYILRPWA YSIWESIKDF FDAEIKKLGV ENCYFPMFVS QGALEKEKTH bmy_17009T0/1-1481 SGCYILRPWA YSIWESIKDF FDAEIKKLGV GNCYFPMFVS QGALEKEKTH BACU004034/1-1511 SGCYILRPWA YSIWESIKDF FDAEIKKLGV GNCYFPMFVS QGALEKEKTH 1101 1150 ENSP00000355890/1-1512 VADFAPEVAW VTRSGKTELA EPIAIRPTSE TVMYPAYAKW VQSHRDLPIK ENSBTAP00000009064/1-1511 IADFAPEVAW VTRSGKTELA EPIAIRPTSE TVMYPAYAKW VQSHRDLPVK ENSTTRP00000012350/1-1511 VADFAPEVAW VTRSGKTELA EPIAVRPTSE TVMYPAYAKW VQSHRDLPIR bmy_17009T0/1-1481 IADFAPEVAW VTRSGKTELA EPIAVRPTSE TVMYPAYAKW VQSHRDLPIR BACU004034/1-1511 IADFAPEVAW VTRSGKTELA EPIAVRPTSE TVMYPAYAKW VQSHRDLPIR 1151 1200 ENSP00000355890/1-1512 LNQWCNVVRW EFKHPQPFLR TREFLWQEGH SAFATMEEAA EEVLQILDLY ENSBTAP00000009064/1-1511 LNQWCNVVRW EFKHPQPFLR TREFLWQEGH SAFATFEEAA EEVLQILDLY ENSTTRP00000012350/1-1511 LNQWCNVVRW EFKHPQPFLR TREFLWQEGH SAFATFEEAA EEVLQILDLY bmy_17009T0/1-1481 LNQWCNVVRW EFKHPQPFLR TREFLWQEGH SAFATFEEAA EEVLQILDLY BACU004034/1-1511 LNQWCNVVRW EFKHPQPFLR TREFLWQEGH SAFATFEEAA EEVLQILDLY 1201 1250 ENSP00000355890/1-1512 AQVYEELLAI PVVKGRKTEK EKFAGGDYTT TIEAFISASG RAIQGGTSHH ENSBTAP00000009064/1-1511 ARVYEELLAI PVVKGRKTEK EKFAGGDYTT TVEAFISASG RAIQGATSHH ENSTTRP00000012350/1-1511 AKVYEELLAI PVVKGRKTEK EKFAGGDYTT TVEAFISASG RAIQGATSHH bmy_17009T0/1-1481 AQVYEELLAI PVVKGRKTEK EKFAGGDYTT TVEAFISASG RAIQGATSHH BACU004034/1-1511 AQVYEELLAI PVVKGRKTEK EKFAGGDYTT TVEAFISASG RAIQGATSHH 1251 1300 ENSP00000355890/1-1512 LGQNFSKMFE IVFEDPKIPG EKQFAYQNSW GLTTRTIGVM TMVHGDNMGL ENSBTAP00000009064/1-1511 LGQNFSKMFE IVFEDPKTAG EKQFAYQNSW GLTTRTIGVM TMVHGDNVGL ENSTTRP00000012350/1-1511 LGQNFSKMFE IIFEDPKTPG EKQFAYQNSW GLTTRTIGVM TMVHGDNMGL bmy_17009T0/1-1481 LGQNFSKMFE IIFEDPKTPG EKQFAYQNSW GLTTRTIGVM TMVHGDNMGL BACU004034/1-1511 LGQNFSKMFE IIFEDPKTPG EKQFAYQNSW GLTTRTIGVM TMVHGDNMGL 1301 1350 ENSP00000355890/1-1512 VLPPRVACVQ VVIIPCGITN ALSEEDKEAL IAKCNDYRRR LLSVNIRVRA ENSBTAP00000009064/1-1511 VLPPRVACVQ VVVIPCGITN ALSEEDRDAL LAKCSDYQRR LLSVNIRVRV ENSTTRP00000012350/1-1511 VLPPRVACVQ VVVIPCGITN ALSEEDRDAL IAKCNDYRRR LLSVNIRVRA bmy_17009T0/1-1481 VLPPRVACVQ VVVIPCGITN ALSEEDRDAL IAKCNDYRRR LLSVNIRVRA BACU004034/1-1511 VLPPRVACVQ VVVIPCGITN ALSEEDRDAL IAKCNDYRRR LLSVNIRVRA 1351 1400 ENSP00000355890/1-1512 DLRDNYSPGW KFNHWELKGV PIRLEVGPRD MKSCQFVAVR RDTGEKLTVA ENSBTAP00000009064/1-1511 DLRDNYSPGW KFNHWELKGV PIRLEVGPRD MKNCQFVAVR RDTGEKLTIA ENSTTRP00000012350/1-1511 DLRDNYSPGW KFNHWELKGV PVRLEVGPRD MKSCQFVAVR RDTGEKLTVA bmy_17009T0/1-1481 DLRDNYSPGW KFNHWELKGV PIRLEVGPRD MKSCQFVAVR RDTGEKLTVA BACU004034/1-1511 DLRDNYSPGW KFNHWELKGV PIRLEVGPRD MKSCQFVAVR RDTGEKLTVA 1401 1450 ENSP00000355890/1-1512 ENEAETKLQA ILEDIQVTLF TRASEDLKTH MVVANTMEDF QKILDSGKIV ENSBTAP00000009064/1-1511 ENEAETKLHA ILEDIHINLF TRASEDLKTH MVVANTMEDF QKELDSGKIA ENSTTRP00000012350/1-1511 ENEADTKLHA ILEDIQVKLF TGASEDLKTH MVVANTMEDF QKELDSGKIA bmy_17009T0/1-1481 ENEAETKLHA ILEDIHVNLF TRASEDLKTH MVVANTMEDF QKELDSGKIA BACU004034/1-1511 ENEAETKLHA ILEDIHVNLF TRASEDLKTH MVVANTMEDF QKELDSGKIA 1451 1500 ENSP00000355890/1-1512 QIPFCGEIDC EDWIKKTTAR DQDLEPGAPS MGAKSLCIPF KPLCELQPGA ENSBTAP00000009064/1-1511 QIPFCGEIDC EDWIKKTTAR DQDLEPGAPS MGAKSLCIPF KPLCELPPGA ENSTTRP00000012350/1-1511 QIPFCGEIDC EDWIKKTTAR DQDLEPGAPS MGAKSLCIPF RPLCELQPGA bmy_17009T0/1-1481 QIPFCGEMDC EDWIKKTTAR DQDLEPGAPS MGAKSLCIPF RPLCELQPGA BACU004034/1-1511 QIPFCGEMDC EDWIKKTTAR DQDLEPGAPS MGAKSLCIPF RPLCELQPGA 1501 1550 ENSP00000355890/1-1512 KCVCGKNPAK YYTLFGRSY ENSBTAP00000009064/1-1511 KCVCGKNPAK YYTLFGRSY ENSTTRP00000012350/1-1511 QCVCGKNPAK YFTLIGRSY bmy_17009T0/1-1481 QCICGKNPAK YYTLFGRSY BACU004034/1-1511 QCVCGKNPAK FYTLFGRSY