KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:08 2014 Check: 00 .. Name: ENSP00000319756/1-1419 Len: 1492 Check: 6285 Weight: 1.00 Name: ENSBTAP00000009070/1-1409 Len: 1492 Check: 198 Weight: 1.00 Name: ENSTTRP00000002599/1-1417 Len: 1492 Check: 2247 Weight: 1.00 Name: bmy_04666T0/1-1492 Len: 1492 Check: 6819 Weight: 1.00 Name: BACU008065/1-1362 Len: 1492 Check: 8380 Weight: 1.00 // 1 50 ENSP00000319756/1-1419 MDGG------ ---------- ------GVCV GRGDLLSSPQ ALGQLLR--- ENSBTAP00000009070/1-1409 ---------- ---------- ---------- -----MKSSG PVERLLRALG ENSTTRP00000002599/1-1417 AEGR------ ---------- ------GVCV GRG-LLSGSR ALGQLLR--- bmy_04666T0/1-1492 MKGKWLPPPG RFQEAPGQAP ALFGPHGRHP RQPDTMKSSG PVERLLRALG BACU008065/1-1362 ---------- ---------- ---------- -----MKSSG PVERLLRALG 51 100 ENSP00000319756/1-1419 KESRPRRAMK PRKAEPHSFR EKVFRKKPPV CAVCKVTIDG TGVSCRVCKV ENSBTAP00000009070/1-1409 RRDSSRATSR PRKAEPHSFR EKVFRKKPPV CAVCKAAIDG TGVSCRVCKV ENSTTRP00000002599/1-1417 KESGAGRAMK PRKAEPHSFR EKVFRKKPPV CAVCKVTIDG TGVSCRVCKV bmy_04666T0/1-1492 RRDSSRATNR PRKAEPHSFR EKVFRKKPPV CAVCKVTIDG TGVSCRVCKV BACU008065/1-1362 RRDSSRATNR PRKAEPHSFR EKVFRKKPPV CAVCKVTIDG TGVSCRVCKV 101 150 ENSP00000319756/1-1419 ATHRKCEAKV TSACQALPPV ELRRNTAPVR RIEHLGSTKS LNHSKQRST- ENSBTAP00000009070/1-1409 ATHRKCEAKV TSSCQALPPV ELRRNTAPVR RIEHLGSTKS LNHSKQRST- ENSTTRP00000002599/1-1417 ATHRKCEAKV TSSCQALPPT ELRRNTAPVR RIEHLGSTKS LNYSKQRST- bmy_04666T0/1-1492 ATHRKCEAKV TSSCQAVPPT ELRRNTAPVR RIEHLGSTKS LNYSKQRSTL BACU008065/1-1362 ATHRKCEAKV TSSCQAVPPT ELRRNTAPVR RIEHLGSTKS LNYSKQRST- 151 200 ENSP00000319756/1-1419 -----LPRSF SLDPLMERRW DLDLTYVTER ILAAAFPARP DEQRHRGHLR ENSBTAP00000009070/1-1409 -----LPRSF SLDPLMERRW DLDLTYVTER ILAASFPARP DEQRHRGHLR ENSTTRP00000002599/1-1417 -----LPRSF SLDPLMERRW DLDLTYVTER ILAAAFPARP DEQRHRGHLR bmy_04666T0/1-1492 PRLRLLPRSF SLDPLMERRW DLDLTYVTER ILAAAFPARP DEQRHRGHLR BACU008065/1-1362 -----LPRSF SLDPLMERRW DLDLTYVTER ILAAAFPARP DEQRHRGHLR 201 250 ENSP00000319756/1-1419 ELAHVLQSKH RDKYLLFNLS EKRHDLTRLN PKVQDFGWPE LHAPPLDKLC ENSBTAP00000009070/1-1409 ELAHVLQSKH RDKYLLFNLS EKRHDLTRLN PKVQDFGWPE LHAPPLDKLC ENSTTRP00000002599/1-1417 ELAHVLQSKH RDKYLLFNLS EKRHDLTRLN PKVQDFGWPE LHAPPLDKLC bmy_04666T0/1-1492 ELAHVLQSKH RDKYLLFNLS EKRHDLTRLN PKVQDFGWPE LHAPPLDKLC BACU008065/1-1362 ELAHVLQSKH RDKYLLFNLS EKRHDLTRLN PKVQDFGWPE LHAPPLDKLC 251 300 ENSP00000319756/1-1419 SICKAMETWL SADPQHVVVL YCKGNKGKLG VIVSAYMHYS KISAGADQAL ENSBTAP00000009070/1-1409 SICKAMETWL SADPQHVVVL YCKGSKGKLG VIVSAYMHYS KISAGADQAL ENSTTRP00000002599/1-1417 SICKAMETWL SADPQHVVVL YCKGSKGKLG VIVSAYMHYS KISAGADQAL bmy_04666T0/1-1492 SICKAMETWL SADPQHVVVL YCKGSKGKLG VIVSAYMHYS KISAGADQAL BACU008065/1-1362 SICKAMETWL SADPQHVVVL YCKGSKGKLG VIVSAYMHYS KISAGADQAL 301 350 ENSP00000319756/1-1419 ATLTMRKFCE DKVATELQPS QRRYISYFSG LLSGSIRMNS SPLFLHYVLI ENSBTAP00000009070/1-1409 ATLTMRKFCE DKVAAELQPS QRRYITYFSG LLSGSIRMNS SPLFLHHVLV ENSTTRP00000002599/1-1417 ATLTMRKFCE DKVASELQPS QRRYISYFSG LLSGSIRMNS SPLFLHYVLV bmy_04666T0/1-1492 ATLTMRKFCE DKVASELQPS QRRYISYFSG LLSGSIRMNS SPLFLHYVLV BACU008065/1-1362 ATLTMRKFCE DKVASELQPS QRRYISYFSG LLSGSIRMNS SPLFLHYVLV 351 400 ENSP00000319756/1-1419 PMLPAFEPGT GFQPFLKIYQ SMQLVYTSGV YHIAGPGPQQ LCISLEPALL ENSBTAP00000009070/1-1409 PVLPAFEPGA GFQPFLKIYQ SMQLVYTSGI YHIAGPGPQQ LCISLEPALL ENSTTRP00000002599/1-1417 PMLPAFEPGT GFQPFLKIYQ SMQLVYTSGI YHVAGPGPQQ LCISLEPALL bmy_04666T0/1-1492 PMLPAFEPGT GFQPFLKIYQ SMQLVYTSGI YHVAGPGPQQ LCISLEPALL BACU008065/1-1362 PMLPAFEPGT GFQPFLKIYQ SMQLVYTSGI YHVAGPGPQQ LCISLEPALL 401 450 ENSP00000319756/1-1419 LKGDVMVTCY HKGGRGTDRT LVFRVQFHTC TIHGPQLTFP KDQLDEAWTD ENSBTAP00000009070/1-1409 LKGDVMVTCY HKGSRGTDRT LVFRVQFHTC TIHGPRLTFS KDQLDEAWTD ENSTTRP00000002599/1-1417 LKGDVMVTCY HRGSRGTDRT LVFRVQFHTC TIHGPRLTFP KDQLDEAWAD bmy_04666T0/1-1492 LKGDVMVTCY HRGSRGTDRT LVFRVQFHTC TIHGPRLTFP KDQLDEAWTD BACU008065/1-1362 LKGDVMVTCY HRGSRGTDRT LVFRVQFHTC TIHGPRLTFP KDQLDEAWTD 451 500 ENSP00000319756/1-1419 ERFPFQASVE FVFSSSPEKI KGSTPRNDPS VSVDYNTTEP AVRWDSYENF ENSBTAP00000009070/1-1409 ERFPFQASVE FVFSSSPEKI KGNTPQNEPS VSVDYNTAEP AVRWDSYENF ENSTTRP00000002599/1-1417 ERFPFQASVE FVFSSSPEKI KGSTPRNEPS VSVDYNTAEP AVRWDSYENF bmy_04666T0/1-1492 ERFPFQASVE FVFSSSPEKI KGSTPRNEPS VSVDYNTAEP AVRWDSYENF BACU008065/1-1362 ERFPFQASVE FVFSSSPEKI KGSTPRNEPS VSVDYNTAEP AVRWDSYENF 501 550 ENSP00000319756/1-1419 NQHHEDSVDG SLTHTRGPLD GSPYAQVQRP PRQTPPAPSP EPPPPPMLSV ENSBTAP00000009070/1-1409 NLHHEDSADD SVTHTRGPLD GSPYAQVQRA PRQTPPAPSP EPPPPPLLSV ENSTTRP00000002599/1-1417 NLHHEDSVDD SVTHTRGPLD GSPYAQVQRA PRQTPPAPSP EPPPPPLLSV bmy_04666T0/1-1492 NLHHEDSVDD SVTHTRGPLD GSPYAQVQRA PRQTPPAPSP EPPPPPLLSV BACU008065/1-1362 NLHHEDSVDD SVTHTRGPLD GSPYAQVQRA PRQTPPAPSP EPPPPPLLSV 551 600 ENSP00000319756/1-1419 SSDSGHSSTL TTEPAAESPG RPPPTAAERQ ELDRLLGGCG VASGGRGAGR ENSBTAP00000009070/1-1409 SSDSGHSSTL TTEPAAESPG RPPPTAAERQ ELERLLGGCG VASGGRGAGR ENSTTRP00000002599/1-1417 SSDSGHSSTL TAEPAAESPG RPPPTAAERR ELERLLGGCG VAAGGRGAGR bmy_04666T0/1-1492 SSDSGHSSTL TTEPAAESPG RPPPTAAERQ ELERLLGGCG VAAGGRGAGR BACU008065/1-1362 SSDSGHSSTL TTEPAAESPG RPPPTAAERQ ELERLLGGCG ---------- 601 650 ENSP00000319756/1-1419 ETAILDDEEQ PTVGGGPHLG VYPGHRPGLS RHCSCRQGYR EPCGVPNGGY ENSBTAP00000009070/1-1409 ETAILDDEDQ PAAGGGPHLG IYSGHRPGLS RHCSCRQGYR EPCGVPNGGY ENSTTRP00000002599/1-1417 ETAILDDEEQ PPAGGGPRLG MYSGHRPGLS RHCSCRQGYR EPCGVPNGGY bmy_04666T0/1-1492 ETAILDDEEQ PPAGGGPRLG MYSGHRPGLS RHCSCRQGYR EPCGVPNGGY BACU008065/1-1362 ---------- ---------- ---------- -------GYR EPCGVPNGGY 651 700 ENSP00000319756/1-1419 YRPEGTLERR RLAYGGYEGS PQGYAEASME KRRLCRSLSE GLYPYPPEMG ENSBTAP00000009070/1-1409 YRPEGTLERR RLAFGAYEGP PQGYAEPSVE KRRLCRSLSE GPYPYPSELG ENSTTRP00000002599/1-1417 YRPEGTLERR RLAYGAYEGP PQGYAEASVE KRRLCRSLSE GPYPYPPELG bmy_04666T0/1-1492 YRPEGTLERR RLAYGAYEGP PQGYAEASVE KRRLCRSLSE GPYPYPPELG BACU008065/1-1362 YRPEGTLERR RLAYGAYEGP PQGYAEASVE KRRLCRSLSE GPYPYPPELG 701 750 ENSP00000319756/1-1419 KPATGDFGYR APGYREVVIL EDPGLPALYP CPACEEKLAL PTAALYGLRL ENSBTAP00000009070/1-1409 KPANGDFGYR PPGYREVVIL EDPGLPPLCS CPACEEKLAL PTAALYGLRL ENSTTRP00000002599/1-1417 KPANGDFGYR APGYREVVIL EDPGLPALCS CPACEEKLAL PTAALYGLRL bmy_04666T0/1-1492 KPANGDFGYR APGYREVVIL EDPGLPALCS CPACEEKLAL PTAALYGLRL BACU008065/1-1362 KPANGDFGYR APGYREVVIL EDPGLPALCS CPACEEKLAL PTAALYGLRL 751 800 ENSP00000319756/1-1419 EREAGEGWAS EAGKPLLHPV RPGHPLPLLL PACGHHHAPM PDYSCLKPPK ENSBTAP00000009070/1-1409 EREAGEGWAS EAGKPLLHPV RPGHPLPLLV PACGHHHTPL PDYSCLKPPK ENSTTRP00000002599/1-1417 EREAGEGWAD EAGKALLHPV RPGHPLPLLV PSCGHHHAPV PGYSCLKPPK bmy_04666T0/1-1492 EREAGEGWAN EAGKPLLHPV RPGHPLPLLV PACGHHHAPV PDYSCLKPPK BACU008065/1-1362 EREAGEGWAN EAGKPLLHPV RPGHPLPLLV PACGHHHAPV PDYSCLKPPK 801 850 ENSP00000319756/1-1419 AGEEGHEGCS YTMCPEGRYG HPGYPALVTY SYGGAVPSYC PAYGRVPHSC ENSBTAP00000009070/1-1409 AGEEGHEGCS YALCPEGRYG HPGYPALVTY GYGGAVPSYC PAYGRVPHSC ENSTTRP00000002599/1-1417 AGEEGHEGCS YAMCPEGRYG HPGYPALVTY GYGGAVPSYC PAYGRAPHSC bmy_04666T0/1-1492 AGEEGHEGCS YAMCPEGRYG HPGYPALVTY GYGGAVPSYC PAYGRAPHSC BACU008065/1-1362 AGEEGHEGCS YAMCPEGRYG HPGYPALVTY GYGGAVPSYC PAYGRAPHSC 851 900 ENSP00000319756/1-1419 GSPGEGRGYP SPGAHSPRAG SISPGSPPYP QSRKLSYEIP TEEGGDRYPL ENSBTAP00000009070/1-1409 GSPGEGRGYP SPRAHSPRAG SISPGSPPYP QSRKLSYEIP AEEGGDRYLL ENSTTRP00000002599/1-1417 GSPGEGRRYP SSGAHSPRAG SISPGSPPYP QSRNLSYEIP AEEGGDRYPP bmy_04666T0/1-1492 GSPGEGRRYP SSGAHSPRAG SISPGSPPYP QSRNLSYEIP AEEGGDRYPL BACU008065/1-1362 GSPGEGRRYP SSGAHSPRAG SISPGSPPYP QSRNLSYEIP AEEGGDRYPL 901 950 ENSP00000319756/1-1419 PGHLASAGPL ASAESLEPVS WREGPSGHST LPRSPRDAPC SASSELSGPS ENSBTAP00000009070/1-1409 PGHLAPAGPL ASAESPEPVS WREGPSGHST LPRSPRDAQC SAASELSGPS ENSTTRP00000002599/1-1417 PGHMAPAGPL ASAESPEPVS WRESPSGHST LPRSPRDAQC SASSELSGPS bmy_04666T0/1-1492 PGHLAPAGPL ASAESPEPVS WREGPSRHST LPRSPRDAQC SASSELSGPS BACU008065/1-1362 PGHLAPAGPL ASAESPEPVS WREGPSGHST LPRSPRDAQC SASSELSGPS 951 1000 ENSP00000319756/1-1419 TPLHTSSPVQ GKESTRRQDT RSPTSAPTQR LSPGEALPPV SQAGTGKAPE ENSBTAP00000009070/1-1409 TPLHTSSPVQ GKESARRQDT RSPTLAPTQR LSPAEALPPV SQGGADKAPE ENSTTRP00000002599/1-1417 TPLHTSSPVQ GKESARRQDT RSPTLAPTQR LSPGEALPPA SQGGAERAPE bmy_04666T0/1-1492 TPLHTSSPVQ GKESARRQDT RSPTLAPPQR LSPGEALPPA SQGGAEKSPE BACU008065/1-1362 TPLHTSSPVQ GKESARRQDT RSPTLAPTQR LSPGEALPPA SQGGAEKSPE 1001 1050 ENSP00000319756/1-1419 LPSGSGPEPL APSPVSPTFP PSSPSDWPQE RSPGGHSDGA SPRSPVPTTL ENSBTAP00000009070/1-1409 LPARSGPEPP APGAFSLASP PSSPNDWPQE RSPGGRSDSA SPRGPVPNTL ENSTTRP00000002599/1-1417 LPARSGPEPP APGPFSPASP PSSPNDWPQE RSPGGRSDST SPRGPVPTTL bmy_04666T0/1-1492 LPARSGPEPA APGPFSPASP PSSPNDWPQE RSPGGRSDSA SPRGPVPTTL BACU008065/1-1362 LPARSGPEPA APGPFSPASP PSSPNDWPQE RSPGGRSDSA SPRGPVPTTL 1051 1100 ENSP00000319756/1-1419 PGLRHAPWQG PRGPPDSPDG SPLTPVPSQM PWLVASPEPP QSSPTPAFPL ENSBTAP00000009070/1-1409 PGLRHAPWQG LRDPPDSPDG SPLTPVPTQM PWLVASPEPP QSSPTPAFPL ENSTTRP00000002599/1-1417 PGLRHAPWQG LRDSPDSPDG SPLTPVPTQM PWLVASPELP RSSPVPAFPL bmy_04666T0/1-1492 PGLRHAPWQG LRDSPDSPDG SPLTPVPTQM PWLVASPEPP QSSPVPAFPL BACU008065/1-1362 PGLRHAPWQG LRDSPDSPDG SPLTPVPTQM PWLVASPEPP QSSPVPAFPL 1101 1150 ENSP00000319756/1-1419 AASYDTNGLS QPPLPEKRHL PGPGQQPGPW GPEQASSPAR GISHHVTFAP ENSBTAP00000009070/1-1409 AASYDINGAP QPPLPEKRHL LGPGQQPGPW GPEQASPPAR GASHHVTFAP ENSTTRP00000002599/1-1417 AASYDISGPT QPPLPEKRHL LGPGQQPGPW GPEQASPPAR GXRHHVTLAP bmy_04666T0/1-1492 AASYDINGPT QPPLPEKRHL LGPGQQPGPW GPEQASPPAR GTSHHVTFAP BACU008065/1-1362 AASYDINGPT QPPLPEKRHL LGPGQQPGPW GPEQASPPAR GMSHHVTFAP 1151 1200 ENSP00000319756/1-1419 LLSDNVPQTP EPPTQESQSN VKFVQDTSKF WYKPHLSRDQ AIALLKDKDP ENSBTAP00000009070/1-1409 LLPDNTPQPP EPPMQESQSN VKFVQDTSKF WYKPHLSRDQ AITLLKDKDP ENSTTRP00000002599/1-1417 RLPD-CPQPP EPPMQESQSN VKFVQDTSKF WYKPHLSRDQ AIALLKDKDP bmy_04666T0/1-1492 LLPDNAPQPP EPPMQESQSN VKFVQDTSKF WYKPHLSRDQ AIALLKDKDP BACU008065/1-1362 LLPDNAPQPP EPPMQESQSN VKFVQDTSKF WYKPHLSRDQ AIALLKDKDP 1201 1250 ENSP00000319756/1-1419 GAFLIRDSHS FQGAYGLALK VATPPPSAQP WKGDPVEQLV RHFLIETGPK ENSBTAP00000009070/1-1409 GAFLIRDSHS FQGAYGLALK VATPPPSAQS WKGDPSEQLV RHFLIETGPK ENSTTRP00000002599/1-1417 GAFLIRDSHS FQGAYGLALK VATPPPSAQP WKGDPLEQLV RHFLIETGPK bmy_04666T0/1-1492 GTFLIRDSHS FQGAYGLALK VATPPPSAQP WKGDPLEQLV RHFLIETGPK BACU008065/1-1362 GTFLIRDSHS FQGAYGLALK VATPPPSAQP WKGDPLEQLV RHFLIETGPK 1251 1300 ENSP00000319756/1-1419 GVKIKGCPSE PYF------- ---------- ---------- ---------- ENSBTAP00000009070/1-1409 GVKIKGCPSE PYF------- ---------- ---------- ---------- ENSTTRP00000002599/1-1417 GVKIKGCPSE PYF------- ---------- ---------- ---------- bmy_04666T0/1-1492 GVKIKGCPSE PYFGEKQRLG RLHWAGPGRP RGVRREEVDR RYLRVPREPT BACU008065/1-1362 GVKIKGCPSE PYF------- ---------- ---------- ---------- 1301 1350 ENSP00000319756/1-1419 -----GSLSA LVSQHSISPI SLPCCLRIPS KDPLEETPEA PVPTNMSTAA ENSBTAP00000009070/1-1409 -----GSLSA LVSQHSISPL SLPCCLRIPS KDPLEEVPEA PVPSNMSTAA ENSTTRP00000002599/1-1417 -----GSLSA LVSQHSISPL SLPCCLHIPS KDPLEEAPEA PAPANMSTAA bmy_04666T0/1-1492 RLSPAGSLSA LVSQHSISPL SLPCCLRIPS KDPLEEAPEA PVPTNMSTAA BACU008065/1-1362 -----GSLSA LVSQHSISPL SLPCCLRIPS KDPLEEAPEA PVPTNMSTAA 1351 1400 ENSP00000319756/1-1419 DLLRQGAACS VLYLTSVETE SLTGPQAVAR ASSAALSCSP RPTPAVVHFK ENSBTAP00000009070/1-1409 DLLRQGAACS VLYLTSVETE SLTGPQAVAR ASSAALSCSP RPTPAVVHFK ENSTTRP00000002599/1-1417 DLLRQGAACS VLYLTSVETE SLTGPQAVAR ASSAALSCSP RPTPAIVHFK bmy_04666T0/1-1492 DLLRQGAACS VLYLTSVETE SLTGPQAVAR ASSAALSCSP RATPAIVHFK BACU008065/1-1362 DLLRQGAACS VLYLTSVETE SLTGPQAVAR ASSAALSCSP RPTPAIVHFK 1401 1450 ENSP00000319756/1-1419 VSAQGITLTD NQRKLFFRRH YPVNSITFSS TDPQDRRWTN PDGTTSKIFG ENSBTAP00000009070/1-1409 VSAQGITLTD NQRKLFFRRH YPVNSITFSS TDPQDRRWTN SDGTTSKIFG ENSTTRP00000002599/1-1417 VSAQGITLTD NQRKLFFRRH YPVNSITFAS TDPQDRRWTN PDGTTSKIFG bmy_04666T0/1-1492 VSAQGITLTD NQRKLFFRRH YPVNSITFAS TDPQDRRWTN PDGTTSKIFG BACU008065/1-1362 VSAQGITLTD NQRKLFFRRH YPVNSITFAS TDPQDRRWTN PDGTTSKIFG 1451 1500 ENSP00000319756/1-1419 FVAKKPGSPW ENVCHLFAEL DPDQPAGAIV TFITKVLLGQ RK ENSBTAP00000009070/1-1409 FVAKKPGSPW ENVCHLFAEL DPDQPAGAIV TFITKVLLGQ RK ENSTTRP00000002599/1-1417 FVAKKPGSPW ENVCHLFAEL DPDQPAGAIV TFITKVLLGQ RK bmy_04666T0/1-1492 FVAKKPGSPW ENVCHLFAEL DPDQPAGAIV TFITKVLLGQ RK BACU008065/1-1362 FVAKKPGSPW ENVCHLFAEL DPDQPAGAIV TFITKVLLGQ RK