KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:09 2014 Check: 00 .. Name: BACU013966/1-629 Len: 766 Check: 8918 Weight: 1.00 Name: bmy_02895T0/1-596 Len: 766 Check: 4786 Weight: 1.00 Name: ENSTTRP00000013416/1-556 Len: 766 Check: 4123 Weight: 1.00 Name: ENSBTAP00000009084/1-470 Len: 766 Check: 5211 Weight: 1.00 Name: ENSP00000466950/1-592 Len: 766 Check: 8162 Weight: 1.00 // 1 50 BACU013966/1-629 ---------- ---------- ---------- ---------- ---------- bmy_02895T0/1-596 MVPSAEGGTG ILKSSGFWSS TEPPLEPWRC GTARCPLIGC RSPAFGASSP ENSTTRP00000013416/1-556 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009084/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000466950/1-592 ---------- ---------- ---------- ---------- ---------- 51 100 BACU013966/1-629 ---------- ---------- ---------- LCVLDSGSYG QSGGEQQ--S bmy_02895T0/1-596 RRPQYGSGRS AAWLWYSLFS AGCGGSAPRP LVMSDSGSYG QSGGEQQ--S ENSTTRP00000013416/1-556 ------LQYG PAWLWYSLFS AGCGGSAPRP LVMSDSGSYG QSGGEQQ--S ENSBTAP00000009084/1-470 ---------- ---------- ---------- --MSDSGSYG QSGGEQQRKS ENSP00000466950/1-592 ---------- ---------- ---------- --MSDSGSYG QSGGEQQ--S 101 150 BACU013966/1-629 YSSYGNQGSQ GYGQSPQSYS GYGQTTDSSY GQNYGGYSSY GQSQSGYSQS bmy_02895T0/1-596 YSSYGNQGSQ GYGQAPQSYS GYGQTTDSSY GQNYGGYSSY GQSQSGYSQS ENSTTRP00000013416/1-556 YSSYGNQGSQ GYGQAPQSYS GYGQTTDSSY GQNYGGYSCY GQSQSGYSQS ENSBTAP00000009084/1-470 YSSYGNQSNQ GYGQAPQSYP GYGQTTEPSY GQNYSGYSSY GQSQSGYSQS ENSP00000466950/1-592 YSTYGNPGSQ GYGQASQSYS GYGQTTDSSY GQNYSGYSSY GQSQSGYSQS 151 200 BACU013966/1-629 YGGYESQKQS SYGQQSYNNQ A-QQNMESSG G--------- ---------- bmy_02895T0/1-596 YGGYESQKQS SYGQQSYNNQ A-QQNMESSG G--------- ---------- ENSTTRP00000013416/1-556 YGGYENQKQS SYGQQSYNNQ A-QQNMESSG G--------- ---------- ENSBTAP00000009084/1-470 YSGYENQKQS SYSQQSYNNQ G-QQNVESSG GISSALNECT KSAKNYPHIS ENSP00000466950/1-592 YGGYENQKQS SYSQQPYNNQ GQQQNMESSG S--------- ---------- 201 250 BACU013966/1-629 ---------- ------QGGR APSYDQSDYG QQDSYDQQSG YDQHHGSYAE bmy_02895T0/1-596 ---------- ------QGGR APSYDQSDYG QQDSYDQQSG YDQHHGSYAE ENSTTRP00000013416/1-556 ---------- ------QGGR APSYDQSDYG QQDSYDQQSG YDQHHGSYAE ENSBTAP00000009084/1-470 GNETSKCGPK RNVSFSQGGR APSYDQSDYG QQDSYDQQSG YDQHQGSYDE ENSP00000466950/1-592 ---------- ------QGGR APSYDQPDYG QQDSYDQQSG YDQHQGSYDE 251 300 BACU013966/1-629 QSNYDQQHDS YNQNQQSYHS QRENYSHHTQ DDRRDVSRYG EDNRGYGGSQ bmy_02895T0/1-596 QSNYDQQHDS YNQNQHSYHS QRENYSHHTQ DDRRDVSRYG EDNRGYGGSQ ENSTTRP00000013416/1-556 QSNYDQQHDS YNQNQQSYHS QRENYSHHTQ DDRRDVSRYG EDNRGYGGSQ ENSBTAP00000009084/1-470 QSNYDQQHDS YNQNQQSYHS QRENYSHHTQ DDRRDVSRYG EDNRGYGGSQ ENSP00000466950/1-592 QSNYDQQHDS YSQNQQSYHS QRENYSHHTQ DDRRDVSRYG EDNRGYGGSQ 301 350 BACU013966/1-629 GGGRGRGGYD KDGRGPMTGS SGGDRGGFKN FGGHRDYGPR PDADSESDNS bmy_02895T0/1-596 GGGRGRGGYD KDGRGPMTGS SGGDRGGFKN FGGHRDYGPR PDADSESDNS ENSTTRP00000013416/1-556 GGGRGRGGYD KDGRGPMTGS SGGDRGGFKN FGGHRDYGPR PDADSESDNS ENSBTAP00000009084/1-470 GGGRGRGGYD KDGRGPMTGS SGGDRGGFKN FGGHRDYGPR PDADSESDNS ENSP00000466950/1-592 GGGRGRGGYD KDGRGPMTGS SGGDRGGFKN FGGHRDYGPR TDADSESDNS 351 400 BACU013966/1-629 DNNTIFVQGL GEGVSTDQVG EFFKQIGIIK TNKKTGKPMI NLYTDKDTGK bmy_02895T0/1-596 DNNTIFVQGL GEGVSTDQVG EFFKQIGIIK -NSISAKPFL FIL------- ENSTTRP00000013416/1-556 NNNTIFVQGL GEGVSTDQVG EFFKQIGIIK TNKKTGKPMI NLYTDKDTGK ENSBTAP00000009084/1-470 DNNTIFVQGL GEGVSTDQVG EFFKQIGIIK TNKKTGKPMI NLYTDKDTGK ENSP00000466950/1-592 DNNTIFVQGL GEGVSTDQVG EFFKQIGIIK TNKKTGKPMI NLYTDKDTGK 401 450 BACU013966/1-629 PKGEATVSFD DPPSAKAAID WFDGKEFHGN IIKVSFATRR PEFMRGGGSG bmy_02895T0/1-596 ---------- ---------- ---GKEFHGN IIKVSFATRR PEFMRGGGSG ENSTTRP00000013416/1-556 PKGEATVSFD DPPSAKAAID WFDGKEFHGN IIKVSFATRR PEFMRGGGSG ENSBTAP00000009084/1-470 PKGEATVSFD DPPSAKAAID WFDGKEFHGN IIKVSFATRR PEFMRGGGSG ENSP00000466950/1-592 PKGEATVSFD DPPSAKAAID WFDGKEFHGN IIKVSFATRR PEFMRGGGSG 451 500 BACU013966/1-629 GGRRGRGGYR ARGGFQGRGG DPKSGDWVCP NPSCGNMNFA RRNSCNQCNE bmy_02895T0/1-596 GGRRGRGGYR GRGGFQGRGG DPKSGDWVCP NPSCGNMNFA RRNSCNQCNE ENSTTRP00000013416/1-556 GGRRGRGGYR GRGGFQGRGG DPKSGDWVCP NPSCGNMNFA RRNSCNQCNE ENSBTAP00000009084/1-470 GGRRGRGGYR GRGGFQGRGG DPKSGDWVCP NPSCGNMNFA RRNSCNQCNE ENSP00000466950/1-592 GGRRGRGGYR GRGGFQGRGG DPKSGDWVCP NPSCGNMNFA RRNSCNQCNE 501 550 BACU013966/1-629 PRPEDSRPAG GDFRGRGYGG ERGYRGRGGR GGDRGGYGGD RSGGGYGGDR bmy_02895T0/1-596 PRPEDSRPAG GDFRGRGYGG ERGYRGRGGR GGDRGGYGGD RSGGGYGGDR ENSTTRP00000013416/1-556 PRPEDSRPLG GDFRGRGYGG ERGYRGRGGR GGDRGGYGGD RSGGGYGGDR ENSBTAP00000009084/1-470 PRPEDSRPSG ---------- ---------- ---------- ---------- ENSP00000466950/1-592 PRPEDSRPSG GDFRGRGYGG ERGYRGRGGR GGDRGGYGGD RSGGGYGGDR 551 600 BACU013966/1-629 S--------- GSGGYGGDRS GGGYGGDRGG GYGGDRGGGY GGGVGGGKEG bmy_02895T0/1-596 S--------- GSGGYGGDRS GGGYGGDRGG GYGGDRGGGY GGDRGGGYGG ENSTTRP00000013416/1-556 S--------- GSGGYGGDRS GGGYGGDRGG GYGGDRGGGY GGDRGGGYGG ENSBTAP00000009084/1-470 ---------- -----GGDRS GGGYGGDR-- ---------- ---------- ENSP00000466950/1-592 SSGGGYSGDR SGGGYGGDRS GGGYGGDRGG GYGGDRGGGY GGDRGGGYGG 601 650 BACU013966/1-629 GWVVGGTEEV VMVGTVVVAM EET------E EAAMEETEAA MVETEAAAMV bmy_02895T0/1-596 DRGGYGGDRG GGYGGERSG- ---------- ---------- -------GGY ENSTTRP00000013416/1-556 ERSG------ ---------- ---------- ---------- -------GGY ENSBTAP00000009084/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000466950/1-592 DRGGYGGDRG GGYGGDRGGY GGDRGGYGGD RGGYGGDRGG YGGDRSRGGY 651 700 BACU013966/1-629 ESEVGGATEE TVVVVATVGT EVE----AME ETGVAAAMEE TEVAMEAKWE bmy_02895T0/1-596 GGDRGG---- -----GGYGG DRS-GGYGGD RSGGGYGGDR GGYG------ ENSTTRP00000013416/1-556 GGDRGG---- -----GGYSG DRS-GGYGGD RSGGGYGGDR GGYG------ ENSBTAP00000009084/1-470 ---------- ---------- ---------- --GGGYGGDR GGYG------ ENSP00000466950/1-592 GGDRGGGSGY GGDRSGGYGG DRSGGGYGGD R-GGGYGGDR GGYG------ 701 750 BACU013966/1-629 EETTTEMISA TDHIDEWFEC SFVSDMIHNE IARVLPAAFL VASSCVVKLS bmy_02895T0/1-596 ----GKMGGR NDYRND---- ---------- -QRNRP---- ---------- ENSTTRP00000013416/1-556 ----GKMGGR NDYRNE---- ---------- -QRNRP---- ---------- ENSBTAP00000009084/1-470 ----GKMGGR NDYRND---- ---------- -QRNRP---- ---------- ENSP00000466950/1-592 ----GKMGGR NDYRND---- ---------- -QRNRP---- ---------- 751 800 BACU013966/1-629 DIWIFIWVGG LGQFFF bmy_02895T0/1-596 ---------- -----Y ENSTTRP00000013416/1-556 ---------- -----Y ENSBTAP00000009084/1-470 ---------- -----Y ENSP00000466950/1-592 ---------- -----Y