KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:37:11 2014 Check: 00 .. Name: ENSP00000284425/1-1617 Len: 1674 Check: 5041 Weight: 1.00 Name: ENSBTAP00000009089/1-1624 Len: 1674 Check: 3814 Weight: 1.00 Name: bmy_14594T0/1-1182 Len: 1674 Check: 7745 Weight: 1.00 Name: BACU011465/1-1620 Len: 1674 Check: 8422 Weight: 1.00 // 1 50 ENSP00000284425/1-1617 ---------- ---------- ---------- ---------- --------MN ENSBTAP00000009089/1-1624 ---------- ---------- ---------- ---------- --------MH bmy_14594T0/1-1182 MALATPLLRT SLESSFKSFE SGLLSDGLTL LIKVVQFNLE VLKGNIFPQN BACU011465/1-1620 ---------- ---------- ---------- ---------- --------MH 51 100 ENSP00000284425/1-1617 MKQKSVYQQT KALLCKNFLK KWRMKRESLL EWGLSILLGL CIALFSSSMR ENSBTAP00000009089/1-1624 MKQKSVYQQT QALLCKNLLK KWRMKRETLL EWGFPILLAL YMCIFSRLNE bmy_14594T0/1-1182 MIKKSVYQQT QALLCKNLLK KWRMKRQSLL EWGFPILLGF YMGIFSYLKE BACU011465/1-1620 MKQKSVYQQT QALLCKNLLK KWRMKRQSLL EWGFPILLGF YMGIFSYLKE 101 150 ENSP00000284425/1-1617 NVQFPGMAPQ NLGRVDKFNS SSLMVVYTPI SNLTQQIMNK TALAPLLKGT ENSBTAP00000009089/1-1624 NVRFPGMPPQ NLGRVDKYNR SFTDVVYTPV SNLTQQIMNK TALAPVMEGR bmy_14594T0/1-1182 NVHFPEMPPQ DLGRVDKFNS SSMDVVYTPI SNXTQQIMNK TACAPFLKGR BACU011465/1-1620 NVHFPEMPPQ DLGRVDKFNS SSMDVVYTPI SNITQQIMNK TACAPFLKGR 151 200 ENSP00000284425/1-1617 SVIGAPNKTH MDEILLENLP YAMGIIFNET FSYKLIFFQG YNSPLWKED- ENSBTAP00000009089/1-1624 RIIGAPDEKS MDEIMLDTFS YSVGVIFNDP FSYKLKFYQR YYVPILKEDF bmy_14594T0/1-1182 RVIGAPDQKY MDKILLDNFP YTVGVIFNDT FSYKLKFYQG YYIPILKEDL BACU011465/1-1620 RVIGAPDQKY MDKILLDNFP YTVGVIFNDT FSYKLKFYQG YYIPILKEDL 201 250 ENSP00000284425/1-1617 FSAHCWDGYG EFSCTLTKYW NRGFVALQTA INTAIIEITT NHPVMEELMS ENSBTAP00000009089/1-1624 FTAYCKRTHI HFSCALEKYW KGGFVPLQAA INAAIIQVTT NHYVMEELMS bmy_14594T0/1-1182 FTAHCWGTDN EFSCSLAKYW SRGFVTLQTA INAAIIQI-- ---------- BACU011465/1-1620 FTAHCWGADN EFSCSLAKYW SRGFVTLQTA INAAIIQITT NHYVMEELMS 251 300 ENSP00000284425/1-1617 VTAITMKTLP FITKNLLHNE MFILFFLLHF SPLVYFISLN VTKERKKSKN ENSBTAP00000009089/1-1624 VTAVNMKTLP FIFKENLQNE MFIFYCLLYF SPLIYFLSLN VARERKNYKD bmy_14594T0/1-1182 ---------- ---------- ---------- ---------- ---------- BACU011465/1-1620 VTAINMKTLP FIFKENLQNE MFIFYCLLYF SPFIYFLSLN VTKERKKYKD 301 350 ENSP00000284425/1-1617 LMKMMGLQDS AFWLSWGLIY AGFIFIISIF VTIIITFTQI IVMTGFMVIF ENSBTAP00000009089/1-1624 LMNLMGLQDS AFWLSWGLIY AAFIFVTSII ITVIITSTEI IILTGFTVIF bmy_14594T0/1-1182 ---------- ---------- ---------- ---------- ---------- BACU011465/1-1620 LMKMMGLQDS AFWLSWGLIY AGFIFITSII ITIIIISTQI IIMTGFMVIF 351 400 ENSP00000284425/1-1617 ILFFLYGLSL VALVFLMSVL LKKAVLTNLV VFLLTLFWGC LGFTVFYEQL ENSBTAP00000009089/1-1624 TLFFLYGLSL IALAFLMTVL LKKTILTSLV VFLLTLFWGG VGFSAFYQQL bmy_14594T0/1-1182 ---------- -ALAFLMTVL LKKTILTSLV VFVLTLFWGG VGFTAFYRQL BACU011465/1-1620 TLFFLYGLSL IALSFLMTVL LKKKILTSLL VFVLTLFWGG VGFTAFYRQL 401 450 ENSP00000284425/1-1617 PSSLEWILNI CSPFAFTTGM IQIIKLDYNL NGVIFPDPSG DSYTMIATFS ENSBTAP00000009089/1-1624 PSPLKWIFSI CSPFAFSAGI NQIIHLDYTM NGVIFPDASG DSYIMIATFS bmy_14594T0/1-1182 PSPLEWIFSI CSPFAFTAGI NQIIHLDYNM NGVIFPDTSG DSYIMIATFS BACU011465/1-1620 PSPLEWIFSI CSPFAFTAGI NQIIHLDYNM NGVIFPDTSG DSYVMIATFS 451 500 ENSP00000284425/1-1617 MLLLDGLIYL LLALYFDKIL PYGDERHYSP LFFLNSSSCF QHQRTNAKVI ENSBTAP00000009089/1-1624 ILTFDALLYL ALALYFDKIL PYGNESHYSP LFFLNSSPCF QHRRTGSHVA bmy_14594T0/1-1182 ILAFDALLYL VLALYFDKIL PYGNEHRYSP LFFLNSSSCF QHQRTDSKVI BACU011465/1-1620 ILAFDALLYL VLALYFDKIL PYGNEHRYSP LFFLNSSSCF QHQRTDSKVI 501 550 ENSP00000284425/1-1617 EKEIDAEHPS DDYFEPVAPE FQGKEAIRIR NVKKEYKGKS GKVEALKGLL ENSBTAP00000009089/1-1624 WKDVDPEPAA GDYCEPVAPE FHGREAVRIR NVKKVYKEKT GKVEVLKGLS bmy_14594T0/1-1182 EKEVDPE--- ---------- --------IR NVKKEYKEKT GKVEVLKGLF BACU011465/1-1620 QKEVDPEFPS DDYFEPVAPE FQGKEAIRIR NVKKEYKEKT GKVEVLKGLF 551 600 ENSP00000284425/1-1617 FDIYEGQITA ILGHSGAGKS SLLNILNGLS VPTEGSVTIY NKNLSEMQDL ENSBTAP00000009089/1-1624 FDIYEGQITA VLGHSGAGKS ALLRILSGSS VPTAGSVTIY NKNLSEMQDL bmy_14594T0/1-1182 FDIYEGQITA ILGHSGAGKS SLLNILNGLS VPTEGSVTIY NKNLSEMQDL BACU011465/1-1620 FDIYEGQITA ILGHSGAGKS SLLNILNGLS VPTEGSVTIY NKNLSEMQDL 601 650 ENSP00000284425/1-1617 EEIRKITGVC PQFNVQFDIL TVKENLSLFA KIKGIHLKEV EQEVQRILLE ENSBTAP00000009089/1-1624 EEIRKITGVC PQFNVQFDTL TVKENLRLFA KIKGIQPKDV EQEVQRVLLE bmy_14594T0/1-1182 EEIQKITGVC PQFNVQFDML TVKENLRLFA KIKGIPPQEV EQEVQRILLE BACU011465/1-1620 EEIQKITGVC PQFNVQFDML TVKENLRLFA KIKGIPPQEV EQEVQRILLE 651 700 ENSP00000284425/1-1617 LDMQNIQDNL AKHLSEGQKR KLTFGITILG DPQILLLDEP TTGLDPFSRD ENSBTAP00000009089/1-1624 LDIQNIQDNL ATLLSEGQKR KLTIGIALLG DPQVLLLDEP TAGLDPFSRH bmy_14594T0/1-1182 LDIQNIQNNI ATHLSEGQKR KLTIGIAILG DPQVLLLDEP TVGLDPFSRH BACU011465/1-1620 LDIQNIQNNI ATHLSEGQKR KLTIGIAILG DPQVLLLDEP TVGLDPFSRH 701 750 ENSP00000284425/1-1617 QVWSLLRERR ADHVILFSTQ SMDEADILAD RKVIMSNGRL KCAGSSMFLK ENSBTAP00000009089/1-1624 RIWNFLRERK ADRVILLSTN LMDEADMLAD RKVILSKGRL KCAGSSVFLK bmy_14594T0/1-1182 RVWSFLKEHK ADRVILLSTN FMDEADILAD RKVILSSGRV KCAGSSVFLK BACU011465/1-1620 RVWSFLKEHK ADRVILLSTN FMDEADILAD RKVILSSGRM KCAGSSVFLK 751 800 ENSP00000284425/1-1617 RRWGLGYHLS LHRNEICNPE QITSFITHHI PDAKLKTENK EKLVYTLPLE ENSBTAP00000009089/1-1624 RRWGLGYHLS LYRNETCDPE KITSLINHHI PDAKLKTESK EKLVYTLPAE bmy_14594T0/1-1182 RRWGLGYHLS LYRNETCDPE KITSLINHHI PDAKLKTESK EKLVYTLPVE BACU011465/1-1620 RRWGLGYHLS LYRNETCDPE KITSLINHHI PDAKLKTESK EKLVYTLPVE 801 850 ENSP00000284425/1-1617 RTNTFPDLFS DLDKCSDQGV TGYDISMSTL NEVFMKLEGQ STIEQDFEQV ENSBTAP00000009089/1-1624 RTNKFPDLFS DLDEDCSLGV LSYEVSTSTL NEVFTKLEGN SMAEQDFEQV bmy_14594T0/1-1182 RTNKFPDLFS DLDKGSGLGV MGYDVSTSTL NEVFMKLEGT STA----EQA BACU011465/1-1620 RMNKFPDLFS DLDKSSGLGV MGYDVSTSTL NEVFMKLEGT STA----EQ- 851 900 ENSP00000284425/1-1617 EMIRDSESLN EMELAHSSFS EMQTAVSDMG LWRMQVFAMA RLRFLKLKRQ ENSBTAP00000009089/1-1624 EMSRDTGRLH EMDPPCPPAP ETQKAMSIAG LWRLQFWAMA RLRFLQLRRG bmy_14594T0/1-1182 EMMGDTGRLP GMDAPCSSLP EMQTAVSAMG LWRLQFCAMA RLRFLKLKHG BACU011465/1-1620 EMMGDTGRLP EMDPPCSSLP EMQPAVSAMG LWRLQVCAMA RLRFLKLKHG 901 950 ENSP00000284425/1-1617 TKVLLTLLLV FGIAIFPLIV ENIMYAMLNE KIDWEFKNEL YFLSPGQLPQ ENSBTAP00000009089/1-1624 KKGLLILLFV FGVAVFPLIV ESIFYAMLNE TADLEFKPEL YFLSPGQLPQ bmy_14594T0/1-1182 KKAFLTLLFV FGIAMFPLIV ESILYAVLNQ KTDWDFKPEL YFLSPGQLPQ BACU011465/1-1620 KKAFLTLLFV FGIAMFPLIV ESILYAVLNQ KTDWDFKPEL YFLSPGQLPQ 951 1000 ENSP00000284425/1-1617 EPRTSLLIIN NTESNIEDFI KSLKHQNILL EVDDFENRNG TDGLSYNGAI ENSBTAP00000009089/1-1624 GPRTSLLIIN NTESNIEDFI QSLKHQNILL EVDDFENRNG TEDPSYNGAI bmy_14594T0/1-1182 DPRTSLLIIN NTESNIEDFI QSLKHQNILL EVDDFENRNG TDDPSYNGAI BACU011465/1-1620 DPRTSLLIIN NTESNIEDFI QSLKHQNILL EVDDFENRNG TDDPSYNGAI 1001 1050 ENSP00000284425/1-1617 IVSGKQKDYR FSVVCNTKRL HCFPILMNII SNGLLQMFNH TQHIRIESSP ENSBTAP00000009089/1-1624 IVSGKRKDYG FSVVCNTKQL HCFPVLMSVV SNVLLRMFNQ TQRIRTERSS bmy_14594T0/1-1182 IVSGKKRDYR FSVVCNTKRL HCFPTLMNIV SNGLLRMLNH TQHIRTERSS BACU011465/1-1620 IVSGKKRDYR FSVVCNTKRL HCFPTLMNIV SNGLLQMLNH TQYIRTERSS 1051 1100 ENSP00000284425/1-1617 FPLSHIGLWT GLPDGSFFLF LVLCSISPYI TMGSISDYKK NAKSQLWISG ENSBTAP00000009089/1-1624 YPLGHMLLRT RLPQGSFFLF FVTCSLSPYI AMNSVSDYKK RTKSQLWISG bmy_14594T0/1-1182 FPF------- ---------- ---------- ---------K RTKSQLWISG BACU011465/1-1620 FPFNYALFWT GLPEGSFFLF FVVCSISPYI AMNSVSDYKK RTKSQLWISG 1101 1150 ENSP00000284425/1-1617 LYTSAYWCGQ ALVDVSFFIL ILLLMYLIFY IENMQYLLIT SQIVFALVIV ENSBTAP00000009089/1-1624 LFPSAYWCGQ ALVDVSLYSL MLLAMYLIFY LANREHIYLT SRIVFALVVL bmy_14594T0/1-1182 LFPSAYWCGQ ALVDVNLYNF ILLSMYSVFY AANMVHIHLA SRAVLALAVI BACU011465/1-1620 LFPSAYWCGQ ALVDVNLYNF ILLSMYSVFY AANMVHIHLT SRAVLALAVI 1151 1200 ENSP00000284425/1-1617 TPGYAASLVF FIYMISFIFR KRRKNSGLWS FYFFFASTIM FSITLINHFD ENSBTAP00000009089/1-1624 TLGYAASLVS LMYVVAFIFR KRRKNSGLWS FCFYVVTVIA FGIIVLFGSG bmy_14594T0/1-1182 TLGYAVSLVF LTYVISFIFR KRRKNSGLWS FCFYMTAVIT FGIIIINQFD BACU011465/1-1620 TLGYAVSLVF LTYVISFIFR KRRKNSGLWS FCFYMTAVIT FGIIIINQFD 1201 1250 ENSP00000284425/1-1617 LSILITTMVL VPSYTLLGFK TFLEVRDQEH YREFPEANFE LSATDFLVCF ENSBTAP00000009089/1-1624 VPVLIPCMAL APSATLIGFI AFLQERIHRY WIKYQEANYD LSAADFLVCL bmy_14594T0/1-1182 FRVLMVCMVL VPSMTLGGFI GFLEE----- ---------- ---------- BACU011465/1-1620 FRVLMVCMVL VPSMTLGGFI GFLEERAHKY QIKYQDPNYD LNATDLLVCL 1251 1300 ENSP00000284425/1-1617 IPYFQTLLFV FVLRCMELKC GKKRMRKDPV FRISPQSRDA KPNPEEPIDE ENSBTAP00000009089/1-1624 IPYFQALLFM FVLRCLEAKC GKKIMQKDPV FRISPQSRDA RSNAEEPIGE bmy_14594T0/1-1182 -PYFQALLFI FVLRCLEIKC GKKIMQKDPV FRISPKSRDG RPNPEEPVDE BACU011465/1-1620 IPYFQALLFI FVLRCLEIKC GKKIMQKDPV FRISPKSRDG RPNPEEPVDE 1301 1350 ENSP00000284425/1-1617 DEDIQTERIR TATALTTSIL DEKPVIIASC LHKEYAGQKK SCFSKRKKKI ENSBTAP00000009089/1-1624 DEDVQAERIR TATALNTSI- EEKPVIIASC LHKEYAGQKK RCFSRRRKKT bmy_14594T0/1-1182 DEDVQAERIR TATALTIST- ---------- ---------- ---------- BACU011465/1-1620 DEDVQAERIR TATALTIST- EEKPVIIASC LHKEYAGQKK RCFSRRKKKI 1351 1400 ENSP00000284425/1-1617 AARNISFCVQ EGEILGLLGP NGAGKSSSIR MISGITKPTA GEVELKGCSS ENSBTAP00000009089/1-1624 AVRNVSFCVK KGEILGLLGP NGAGKSSSVR MISGMMTPTA GEVELTGYGS bmy_14594T0/1-1182 ---------- ---------- ---------- ---------- EEVEKQATE- BACU011465/1-1620 AARNVSFCVK KGEILGLLGP NGAGKSSSIR MISGVMKPTA GEVELTGYGS 1401 1450 ENSP00000284425/1-1617 VLGH------ --LGYCPQEN VLWPMLTLRE HLEVYAAVKG LRKADARLAI ENSBTAP00000009089/1-1624 DPDQQGDISI RFLGYCPQEN VLWPSLTTRE HLEVFAAVKG LRRADAHMAI bmy_14594T0/1-1182 ---------- ---------- --WV------ ---------- ---------- BACU011465/1-1620 VLGHQGDGSV RSLGYCPQEN VLWPILTARE HLEVFAAVKG LRKADASVAI 1451 1500 ENSP00000284425/1-1617 ARLVSAFKLH EQLNVPVQKL TAGITRKLCF VLSLLGNSPV LLLDEPSTGI ENSBTAP00000009089/1-1624 SRLVDAFRLH EQLDVPVQKL SGGAARKLCF VLSLLGDPPI LLLDEPSTGL bmy_14594T0/1-1182 --LAELFEGG QEWGL----- -------ICW V--------- ---------- BACU011465/1-1620 SRLVDAFKLH EQLNVPVQKL TAGATRKLCF VLSILGDPPV LLLDEPSTGL 1501 1550 ENSP00000284425/1-1617 DPTGQQQMWQ AIQAVVKNTE RGVLLTTHNL AEAEALCDRV AIMVSGRLRC ENSBTAP00000009089/1-1624 DPAEQKQLWQ TVQRAVRNTA RGALLTTHSM AEAEAVCDRV AIMVSGRLRC bmy_14594T0/1-1182 -SFRKFAVW- ---------- ---------- ---------- ---------C BACU011465/1-1620 DPTEQQHMWQ TIQTAIKNTE RGALLTTHYL AEAEAVCDRV AVMVSGRLRC 1551 1600 ENSP00000284425/1-1617 IGSIQHLKNK LGKDYILELK VKETSQVTLV HTEILKLFPQ AAGQERYSSL ENSBTAP00000009089/1-1624 IGSIQHLKNS LGKDYILELK LKEASQGMSV HTEVLRLFPR AAPQERYSSS bmy_14594T0/1-1182 I--------- ---------- -----QVILK HAGASFEGPG CSENTNHSGF BACU011465/1-1620 IGSIQHLKNN LGKEYILELT VKETSQVPLV HTEVLKLFPH AAQQERYSSF 1601 1650 ENSP00000284425/1-1617 LTYKLPVADV YPLSQTFHKL EAVKHNFNLE EYSLSQCTLE KVFLELSKEQ ENSBTAP00000009089/1-1624 SAYRLPVQDV QPLSQAFHKL ETVKRNFNLE EYSLSQCTW- KVFLELSKEQ bmy_14594T0/1-1182 IFLR------ ---------- ---------- ---------- KMGLDM---- BACU011465/1-1620 LAYKLPTEDV RPLSQAFHKL EAVKHNFNLE EYNLSQCTLE KVSLELSKEQ 1651 1700 ENSP00000284425/1-1617 EVGNFDEEID TTMRWKLLPH SDEP ENSBTAP00000009089/1-1624 ELGNVDEEVN TTMRWKLLCH SEGP bmy_14594T0/1-1182 ---------- ---------- ---- BACU011465/1-1620 ELGNFDEEVD TTMRWKLLPH SEDP