KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:12 2014 Check: 00 .. Name: ENSTTRP00000001287/1-520 Len: 687 Check: 1579 Weight: 1.00 Name: bmy_18286T0/1-363 Len: 687 Check: 2314 Weight: 1.00 Name: BACU004305/1-619 Len: 687 Check: 6622 Weight: 1.00 Name: ENSP00000270583/1-520 Len: 687 Check: 8076 Weight: 1.00 Name: ENSBTAP00000009093/1-589 Len: 687 Check: 1292 Weight: 1.00 // 1 50 ENSTTRP00000001287/1-520 MGKKGKKEKK GRGAEKTAAK MEKKVSKRSR KEEEDLEALI AHFQALDARK bmy_18286T0/1-363 ---------- ---------- ---------- ---------- ---------- BACU004305/1-619 MGKKGKKEKK GRGAEKTAAK MEKKVSKRSR KEEED----- ---------- ENSP00000270583/1-520 MGKKGKKEKK GRGAEKTAAK MEKKVSKRSR KEEEDLEALI AHFQTLDAKR ENSBTAP00000009093/1-589 MGKKGKKEKK GRGAEKTAAK MEKKVSKRSR KEEEDLEALI AHFQTLDARK 51 100 ENSTTRP00000001287/1-520 TRIVETPCSP PSPRLNASLS AHPEKEELIL FGGEYFNGQK TLLYNELYVY bmy_18286T0/1-363 ---------- ---------- ---------- ---------- ---------- BACU004305/1-619 -NFSGGPRSP HSPLPGSRCQ KDSDRGDTLP PA-----FSK TFFYNELYIY ENSP00000270583/1-520 TQTVELPCPP PSPRLNASLS VHPEKDELIL FGGEYFNGQK TFLYNELYVY ENSBTAP00000009093/1-589 TQVVETPCSP PSPRLNASLS THPEKDELIL FGGEYFNGQK TFLYNELYVY 101 150 ENSTTRP00000001287/1-520 NIRKDAWTKV EIPNPPPRRC AHQAVVVPQG GGQLWIFGGE FASPDGEHFY bmy_18286T0/1-363 ---MVAWKR- ---------- ---------- --QLILFGG- ---------- BACU004305/1-619 NIRKDAWTKV EIPNPPPRRC AHQAVVVPQG GGQLWIFGGE FASPDGEQFY ENSP00000270583/1-520 NTRKDTWTKV DIPSPPPRRC AHQAVVVPQG GGQLWVFGGE FASPNGEQFY ENSBTAP00000009093/1-589 NIRKDSWTKV EIPNPPPRRC AHQAVVVPQG GGQLWIFGGE FASPDGEQFY 151 200 ENSTTRP00000001287/1-520 HYRDLWVLHL ATRTWEQVR- ---------- ---------- ---------- bmy_18286T0/1-363 -------FHE STSS------ ---------- ---------- ---------- BACU004305/1-619 HYRDLWVLHL ATKTWEQVSY SFQNAVVISL FTSGELVLDV FVACLSALVA ENSP00000270583/1-520 HYKDLWVLHL ATKTWEQVK- ---------- ---------- ---------- ENSBTAP00000009093/1-589 HYKDLWVLHL ATKTWEQVR- ---------- ---------- ---------- 201 250 ENSTTRP00000001287/1-520 ---------- -------SPG GP-------- ---------- ---------- bmy_18286T0/1-363 ---------- ---------- ---------- ---------- ---------- BACU004305/1-619 FACNVWVRDG EWLREEAAPV GPGVDGGGMS WGTQPRDMEK PCQPLQPVEW ENSP00000270583/1-520 ---------- -------STG GP-------- ---------- ---------- ENSBTAP00000009093/1-589 ---------- -------SPG GP-------- ---------- ---------- 251 300 ENSTTRP00000001287/1-520 ---------- -SGRSGHRMV AWKRQLILFG G------FHE STRDYIYYND bmy_18286T0/1-363 ---------- ---------- -------LFH VTAFLFVFLY YNRDYIYYND BACU004305/1-619 GRLRGERFSH RAERTGRQTY LYFKSSSLFH VTALLFVFLY YNRDYIYYND ENSP00000270583/1-520 ---------- -SGRSGHRMV AWKRQLILFG G------FHE STRDYIYYND ENSBTAP00000009093/1-589 ---------- -SGRSGHRMV AWKRQLILFG G------FHE STRDYIYYND 301 350 ENSTTRP00000001287/1-520 LYAFNLDAFT WSRLSPSGTG PTPRSGCQMT VTAQGSIVIY GGYSKQRVRK bmy_18286T0/1-363 LYAFNLDAFT WSRLSPSGTG PTPRSGCQMT VTAQGSIVIY GGYSKQRVKK BACU004305/1-619 LYAFSLDAFT WSRLSPSGTG PTPRSGCQMT VTAQGSVVIY GGYSKQRVRK ENSP00000270583/1-520 VYAFNLDTFT WSKLSPSGTG PTPRSGCQMS VTPQGGIVVY GGYSKQRVKK ENSBTAP00000009093/1-589 VYAFNLDTFT WSKLSPSGTG PTPRSGCQMT ITPQGNIIIY GGYSKQRVRK 351 400 ENSTTRP00000001287/1-520 DVDRGTQHSD MFLLKAEEGR EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18286T0/1-363 DVDRGTQHSD MFLLKAEEGR EGRWAWARVN PSGAKPTPRS GFSVAVAPNH BACU004305/1-619 DVDRGTQDSD MFLLKAEEGR EGRWAWARVN PSGAKPSPRS GFSVAVAPNH ENSP00000270583/1-520 DVDKGTRHSD MFLLKPEDGR EDKWVWTRMN PSGVKPTPRS GFSVAMAPNH ENSBTAP00000009093/1-589 DVDRGTQHSD MFLLKAEDGS KGKWSWTRIN PSGAKPTPRS GFSVAVAPNH 401 450 ENSTTRP00000001287/1-520 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18286T0/1-363 QTLLFGGVCD EEEEESLEGH FLNDLHIYDP VRNRWLAGQL KGPKVEKRRR BACU004305/1-619 QTLLFGGVCD EEEEESLEGH FLNDLHFYDP VRNRWLTGQL KGPKVEKRRR ENSP00000270583/1-520 QTLFFGGVCD EEEEESLSGE FFNDLYFYDA TRNRWFEGQL KGPKSEKKKR ENSBTAP00000009093/1-589 QTLLFGGVCD EEEEESLEGD FLNDLHFYDP IRNRWFAGQL KGPKAEKRRR 451 500 ENSTTRP00000001287/1-520 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18286T0/1-363 RRGKKGEPGG ANQQEMKGTG AQEPLEVVRE VVAEDGTVVT IKQVLAALGP BACU004305/1-619 RRGKRGEPGG ANQQEMKGTG AQEPLEVVRE VVAEDGTVVT IKQVLAALGP ENSP00000270583/1-520 RRGRKEEPEG GSRPACGGAG TQGPVQLVKE VVAEDGTVVT IKQVLTAPGS ENSBTAP00000009093/1-589 RRGRKAEPGG ADKQAAKGPS AQEPLEVVRE VVSEDGTVVT IKQVLAAPGV 501 550 ENSTTRP00000001287/1-520 XXXXXX---- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18286T0/1-363 AGRPESD--- DDDDGPNEAG VPAVEPSPRS NAMLAAKHGR LYLYGGMFEA BACU004305/1-619 AGRPEPDNDE DDDDGPSEAG VPAVEPSPRS NAMLAAKHGR LYLYGGMFEA ENSP00000270583/1-520 AGQPRS---- EDEDSLEEAG SPAPGPCPRS NAMLAVKHGV LYVYGGMFEA ENSBTAP00000009093/1-589 AGQLES---- DDDDGPEEAG VAPVEPSPRS NAMLAVKHGR LYLYGGMFEA 551 600 ENSTTRP00000001287/1-520 XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- XSQEWLEETD SEEDSDEVKG bmy_18286T0/1-363 GDRQVTLSDL YCLDLHKMEE WTVLVEMDPG EGVAPLQLKV VIRTATEEDK BACU004305/1-619 GDRQVTLSDL YCLDLHKMEE WTVLVEMDP- ESQEWLEETD SEEDSDEVTG ENSP00000270583/1-520 GDRQVTLSDL HCLDLHRMEA WKALVEMDP- ETQEWLEETD SEEDSEEVEG ENSBTAP00000009093/1-589 GDRQVTLSDL YCLDLHKMEE WMVLVETDP- ESQEWLEETD SDEDSEEAEG 601 650 ENSTTRP00000001287/1-520 AEGGGESEED -----EDSGE EAR------- ---------- ---------- bmy_18286T0/1-363 KPEGGPHCPH -----AASPS RAGHVWVC-- ---------- ---------- BACU004305/1-619 AEGGGEDEED -----EAGGA EAGAAFANAT ISSDEKVNKQ NGDSDV---- ENSP00000270583/1-520 AEGG---VDD -----EDSGE ESGAED---- ---------- ---------- ENSBTAP00000009093/1-589 AEGGGEEDED EEEEEEESGE EGGEEHPSVA PGELFADYLP RTEQHWLRCA 651 700 ENSTTRP00000001287/1-520 ---------- ---------- ---------- ------- bmy_18286T0/1-363 ---------- ---------- ---------- ------- BACU004305/1-619 ---------- ---------- ---------- ------- ENSP00000270583/1-520 ---------- ---------- ---------- ------- ENSBTAP00000009093/1-589 RDSVGPGAPE RRVLRAAQAL AQAFYDGSAG RWTEGGA