KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:14 2014 Check: 00 .. Name: ENSTTRP00000014700/1-892 Len: 1463 Check: 2019 Weight: 1.00 Name: ENSP00000377934/1-1343 Len: 1463 Check: 7082 Weight: 1.00 Name: ENSBTAP00000009103/1-1350 Len: 1463 Check: 7869 Weight: 1.00 Name: bmy_15712T0/1-1362 Len: 1463 Check: 7619 Weight: 1.00 Name: BACU016086/1-1245 Len: 1463 Check: 3565 Weight: 1.00 // 1 50 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- ---------- ENSP00000377934/1-1343 ---------- ---------- ---------- ---------- -MGLEAQRLP ENSBTAP00000009103/1-1350 ---------- ---------- ---------- ---------- -MGLEAQRLP bmy_15712T0/1-1362 VRSCRIWLQV TCKVSPGADG RGL---FLSS --QGREQPSL NMGLEAQRLP BACU016086/1-1245 --------MV SARLGSNDRA RGPPPSLLSS LLEGREQPSL NMGLEAQRLP 51 100 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- ---------- ENSP00000377934/1-1343 GAEEAPVRVA LRVRPLLPKE LLHGHQSCLQ VEPGLGRVTL GRDRHFGFHV ENSBTAP00000009103/1-1350 GAEEAPVRVA LRVRPLLRKE LLHGHQSCLT VEPGRSRVTL GRDRHFGFHV bmy_15712T0/1-1362 GAEEAPVRVA LRVRPLLPKE LLHGHQSCLR VEPGHGRVTL GRNRHFGFHV BACU016086/1-1245 GAEEAPVRVA LRVRPLLPKE LLHGHQSCLR VEPGHGRVTL GRDRHFGFHV 101 150 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- ---------- ENSP00000377934/1-1343 VLAEDAGQEA VYQACVQPLL EAFFEGFNAT VFAYGQTGSG KTYTMGEASV ENSBTAP00000009103/1-1350 VLDEDAGQEA VYQACVQPLL EAFFEGFNVT VFAYGQTGSG KTYTMGEASV bmy_15712T0/1-1362 VLDEDAGQEA VYQACVQPLL EAFFEGFNAT VFAYGQTGSG KTYTMGEASV BACU016086/1-1245 VLDEDAGQEA VYQACVQPLL EAFFEGFNAT IFAYGQTGSG KTYTMGEASV 151 200 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- ---------- ENSP00000377934/1-1343 ASLLEDEQGI VPRAMAEAFK LIDENDLLDC LVHVSYLEVY KEEFRDLLEV ENSBTAP00000009103/1-1350 ASLHEDEQGI IPRAMAEAFK LIDENDLLDC LVHVSYLEVY KEEFRDLLEV bmy_15712T0/1-1362 ASLHEDEQGI IPRAMAETFK LIDENDLLDC LVHVSYLEVY KEEFRDLLEV BACU016086/1-1245 ASLHEDEQGI IPRAMAEAFK LIDENDLLDC LVHVSYLEAY KEEFRDLLEV 201 250 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- ---------- ENSP00000377934/1-1343 GTASRDIQLR EDERGNVVLC GVKEVDVEGL DEVLSLLEMG NAARHTGATH ENSBTAP00000009103/1-1350 GTASRDIQLR EDDRGNVVLC GVKEVDVEGL DEVLSLLEMG NAARHTGATH bmy_15712T0/1-1362 GTASRDIQLR EDDRGNVVLC GVKEVDVEGL DEVLSLLEMG NAARHTGATH BACU016086/1-1245 GTASRDIQLR EDDRGNVVLC GVKEVDVEGL DEVLSLLEMG NAARHTGATH 251 300 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- ---------- ENSP00000377934/1-1343 LNHLSSRSHT VFTVTLEQRG RAPSRLPRPA PGQLLVSKFH FVDLAGSERV ENSBTAP00000009103/1-1350 LNRLSSRSHT IFTVTLEQRG RAPSRLPRPA AGQLLVSKFH FVDLAGSERV bmy_15712T0/1-1362 LNRLSSRSHT VFTVTLEQRG RAPSRLPRPV AGQLLISKFH FVDLAGSERV BACU016086/1-1245 LNRLSSRSHT VFTVTLEQRG RAPSRLPRPA AGQLLISKFH FVDLAGSERV 301 350 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- ---------- ENSP00000377934/1-1343 LKTGSTGERL KESIQINSSL LALGNVISAL GDPQRRGSHI PYRDSKITRI ENSBTAP00000009103/1-1350 LKTGSTGERL KESIQINSSL LALGNVISAL GDPQRRGSHI PYRDSKITRI bmy_15712T0/1-1362 LKTGSTGERL KESIQINSSL LALGNVISAL GDPQRRGSHI PYRDSKITRI BACU016086/1-1245 LKTGSTGERL KESIQINSSL LALGNVISAL GDPQRRGSHI PYRDSKITR- 351 400 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- ---------- ENSP00000377934/1-1343 LKDSLGGNAK TVMIACVSPS SSDFDETLNT LNYASRAQNI RNRATVNWRP ENSBTAP00000009103/1-1350 LKDSLGGNAK TMMIACISPS SSDFDETLNT LNYASRAQNI RNRATVNWRP bmy_15712T0/1-1362 LKDSLGGNAK TVMIACVSPS SSDFDETLNT LNYASRAQNI CNRATVNWRP BACU016086/1-1245 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- ---------- ENSP00000377934/1-1343 EAERPPEETA SGARGPPRHR SETRIIHRGR RAPGPATASA AAAMRLGAEC ENSBTAP00000009103/1-1350 EAERGPEEAV ASARGPPRHR SETRIIHRGR RAPGPAAASA AATARLGAEC bmy_15712T0/1-1362 EAERAPEEAA AGPRGPPRHR SETRIIHRGR RAPGPTAAPA AAAARLGAEC BACU016086/1-1245 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000014700/1-892 ---------- ---------- ---------- ---------- -RSALSSASG ENSP00000377934/1-1343 ARYRACTDAA YSLLRELQAE PGLPGAAARK VRDWLCAVEG ERSALSSASG ENSBTAP00000009103/1-1350 ARYRARTDAA YSLLRELQAE PGLPGAAARK VRDWLCAVEG ERSALSSASG bmy_15712T0/1-1362 ARYRARTDAA YSLLRELQAE PGLPGAAARK VRDWLCAVEG ERSALSSASG BACU016086/1-1245 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000014700/1-892 PDSGIESASA EEQAMQGPGG RK-----EDE GALQLLALQS QVARLEEENR ENSP00000377934/1-1343 PDSGIESASV EDQAAQGAGG RK-----EDE GAQQLLTLQN QVARLEEENR ENSBTAP00000009103/1-1350 PDSGIESASA EEQATQGPGG RK-----EDE GPLQLLALQS QVARLEEENR bmy_15712T0/1-1362 PDSGIESASA EEQAMQGPSG RKVAKGQEDE GALQLLALQS QVARLEEENR BACU016086/1-1245 ---GIESASA EEQAMQGPGG RKVAKGQEDE GALQLLALQS QVARLEEENR 551 600 ENSTTRP00000014700/1-892 DFLAALEDAM EQYK------ ---------- ---------- ---------- ENSP00000377934/1-1343 DFLAALEDAM EQYK------ ---------- ---------- ---------- ENSBTAP00000009103/1-1350 DFLAALEDAM EQYK------ ---------- ---------- ---------- bmy_15712T0/1-1362 DFLAALEDAM EQYK------ ---------- ---------- ---------- BACU016086/1-1245 DFLAALEDAM EQYKLQHGEG RVASDVLFSF LHFCLSASLH PTFRTSALPH 601 650 ENSTTRP00000014700/1-892 ------LQSD RLREQQEEMA ELRLRLELVR PGWGAPGLLQ GLPPESFMPR ENSP00000377934/1-1343 ------LQSD RLREQQEEMV ELRLRLELVR PGWGGPRLLN GLPPGSFVPR ENSBTAP00000009103/1-1350 ------LQSD RLREQQEEMA ELRLRLELVW PGWGAPGILQ GLPPGSFVPR bmy_15712T0/1-1362 ------LQSD RLREQQEEMA ELRLRLELVR PGWGAPGLLQ GLPPESFMPR BACU016086/1-1245 QHLDRVLQSD RLREQQEEMA ELRLRLELVR PGWGAPGLLQ GLPPESFMPR 651 700 ENSTTRP00000014700/1-892 PHTAPLGGAH THVLGMVPPA CLPGDEVGPE NWGEXXXXXX XXXXXXXXXX ENSP00000377934/1-1343 PHTAPLGGAH AHVLGMVPPA CLPGDEVGSE QRGEQVTNGR EAGAELLTEV ENSBTAP00000009103/1-1350 PHTAPLGGAH THVLGMVPPA CIPGDEVGPE SRGEQMKNGR EAGAKFLTVG bmy_15712T0/1-1362 PHTAPLGGAH TRVLGMVPPA CLPGDEVGPE NWGEQVTNGG EAGAKLLAEG BACU016086/1-1245 PHTAPLGGAH TRVLGMVPPA CLPGDEVGPE NWGE-VTNGG EAGAKLLAEG 701 750 ENSTTRP00000014700/1-892 XXXXXXXXXX XXXXXXXXXX -----XXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377934/1-1343 NRLGSGSSAA SEEEEE--EE EP---PRRTL HLRRNRISNC SQRAGARPGS ENSBTAP00000009103/1-1350 DRPGSGSSDA SEAEEEEEEE EKVWLPRQSL YPRRNGVSKW NQRMGACPES bmy_15712T0/1-1362 ERLGSGSSAA SEEEEEGGEE EP---PRRIL HPRRNRISKG SQRMGARPGS BACU016086/1-1245 ERLGSGSSAA SEEEEEGGEE EP---PRRIL HPR-----SW DSGLDSQPIT 751 800 ENSTTRP00000014700/1-892 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377934/1-1343 LPERKGPELC LEELDAAIPG SRAVGGSKAR VQARQVPPAT ASEWRLAQAQ ENSBTAP00000009103/1-1350 PLNRKGPELR LEELGAAIPG PRVVGGSKAL AQPRQAPAAM ASEWRLAQAQ bmy_15712T0/1-1362 PLNRKGPELR LEELGATIPG PR-------- ---------- ---------- BACU016086/1-1245 ---------- ---------- --VVGGSQAL VRPCQAPTAM ASEWRLAQAQ 801 850 ENSTTRP00000014700/1-892 XXXXXXXXXX XXXXXXXXXX XXXXKAAQAL NRQHSQRIRE LEQEAERVRT ENSP00000377934/1-1343 QKIRELAINI RMKEELIGEL VRTGKAAQAL NRQHSQRIRE LEQEAEQVRA ENSBTAP00000009103/1-1350 QKIRELAINI RMKEELIGEL VRTGKAAQAL NRQHSQRIQE LEREAERVRA bmy_15712T0/1-1362 ---------- ---------- ---GKAAQAL NRQHSQRIRE LEQEAERVRA BACU016086/1-1245 QKIRELAINI RMKEELIGEL VRTGKAAQAL NRQHSQRIRE LEQEAERVRA 851 900 ENSTTRP00000014700/1-892 ELSEGQRQLQ ELEGKEPQDA SECSQLQEFR KRVAAAQSQV QVLKE-KQAT ENSP00000377934/1-1343 ELSEGQRQLR ELEGKELQDA GERSRLQEFR RRVAAAQSQV QVLKEKKQAT ENSBTAP00000009103/1-1350 ELSEGQRQLW ELEGREPQDA GERSQLQEFR KRVAAAQNQV QVLKEKKQAT bmy_15712T0/1-1362 ELSEGQRQLR ELEGKEPQDA SERSQLQEFR KRVAAAQSQV QVLKEKKQAT BACU016086/1-1245 ELSEGQRQLR ELEGKEPQDA SERSQLQEFR KRVAAAQSQV QVLKEKKQAT 901 950 ENSTTRP00000014700/1-892 ERLVSLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377934/1-1343 ERLVSLSAQS EKRLQELERN VQLMRQQQGQ LQRRLREETE QKRRLEAEMS ENSBTAP00000009103/1-1350 ERLASLSAQS EKRLQELERN VQLMRQQQGQ LQRRLREETE QKRRLEAEMN bmy_15712T0/1-1362 ERLVSLSAQS EKRLQELERN VQLMRQQQGQ LQRRLREETE QKRRLETEMN BACU016086/1-1245 ERLVSLSAQS EKRLQELERN VQLMRQQQGQ LQRRLREETE QKRRLETEMN 951 1000 ENSTTRP00000014700/1-892 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK ENSP00000377934/1-1343 KRQHRVKELE LKHEQQQKIL KIKTEEIAAF QRKRRSGSNG SVVSLEQQQK ENSBTAP00000009103/1-1350 KRQHRVKELE LKHEQQQKIL KIKTEEIAAF QRKRRSGSNG SVVSLEQQQK bmy_15712T0/1-1362 KRQHRVKELE LKHEQQQKIL KIKTEEIAAF QRKRRSGSNG SVVSLEQQQK BACU016086/1-1245 KRQHRVKELE LKHEQQQKIL KIKTEEIAAF QRKRRSGSNG SVVSLEQQQK 1001 1050 ENSTTRP00000014700/1-892 IEEQKKWLDQ EMEKVLQQRR ALEELGEELH KREAILAKKE ALMQEKTGLE ENSP00000377934/1-1343 IEEQKKWLDQ EMEKVLQQRR ALEELGEELH KREAILAKKE ALMQEKTGLE ENSBTAP00000009103/1-1350 IEEQKKWLDQ EMEKVLQQRR ALEELGEELH KREAILAKKE ALMQEKTGLE bmy_15712T0/1-1362 IEEQKKWLDQ EMEKVLQQRR ALEELGEELH KREGILAKKE ALMQEKTGLE BACU016086/1-1245 IEEQKKWLDQ EMEKVLQQRR ALEELGEELH KREAILAKKE ALMQEKTGLE 1051 1100 ENSTTRP00000014700/1-892 SKRLRSS--- ---------- ---------- --QALNEDIV RVSSRLEHLE ENSP00000377934/1-1343 SKRLRSS--- ---------- ---------- --QALNEDIV RVSSRLEHLE ENSBTAP00000009103/1-1350 SKRLRSS--- ---------- ---------- --QALNEDIV RVSSRLEHLE bmy_15712T0/1-1362 SKRLRSSQVR SCQVRPYPMR PYPMRPCHGR PCQALNEDIV RVSSRLEHLE BACU016086/1-1245 SKRLRSS--- ---------- ---------- --QALNEDIV RVSSRLEHLE 1101 1150 ENSTTRP00000014700/1-892 KELSEKSGQL RQGSAQSQQQ IRGEIDALRQ EKDALLKQRL EIDGKLRQGS ENSP00000377934/1-1343 KELSEKSGQL RQGSAQSQQQ IRGEIDSLRQ EKDSLLKQRL EIDGKLRQGS ENSBTAP00000009103/1-1350 KELSEKSGQL RQGSAQSQQQ IRGEIDALRQ EKDSLLKQRL EIDSKLRQGS bmy_15712T0/1-1362 KELSEKSGQL RQGSAQSQQQ IRGEIDALRQ EKDALLKQRL EIDGKLRQGS BACU016086/1-1245 KELSEKSGQL RQGSAQSQQQ IRGEIDALRQ EKDALLKQRL EIDGKLRQGS 1151 1200 ENSTTRP00000014700/1-892 LLSPEEERTL FQLDEAIEAL DAAIEYKNEA ITCRQRVLRA SASLLSQCEM ENSP00000377934/1-1343 LLSPEEERTL FQLDEAIEAL DAAIEYKNEA ITCRQRVLRA SASLLSQCEM ENSBTAP00000009103/1-1350 LLSPEEERTL FQLDEAIEAL DAAIEYKNEA ITCRQRVLRA SASLLSQCEM bmy_15712T0/1-1362 LLSPEEERTL FQLDEAIEAL DAAIEYKNEA ITCRQRVLRA SASLLSQCEM BACU016086/1-1245 LLSPEEERTL FQLDEAIEAL DAAIEYKNEA ITCRQRVLRA SASLLSQCEM 1201 1250 ENSTTRP00000014700/1-892 NLMAKLSYLS SSETRALLCK YFDKVVTLRE EQHQQQIAFS ELEMQLEEQQ ENSP00000377934/1-1343 NLMAKLSYLS SSETRALLCK YFDKVVTLRE EQHQQQIAFS ELEMQLEEQQ ENSBTAP00000009103/1-1350 NLMAKLSYLS SSETRALLCK YFDKVVTLRE EQHQQQVAFS ELELQLEEQQ bmy_15712T0/1-1362 NLMAKLSYLS SSETRALLCK YFDKVVTLRE EQHQQQIAFS ELEMQLEEQQ BACU016086/1-1245 NLMAKLSYLS SSETRALLCK YFDKVVTLRE EQHQQQIAFS ELEMQLEEQQ 1251 1300 ENSTTRP00000014700/1-892 RLVYWLEVAL ERQRLEMDRQ LTLQQKEHEQ NIQLLLQQSR EHLGEGLADS ENSP00000377934/1-1343 RLVYWLEVAL ERQRLEMDRQ LTLQQKEHEQ NMQLLLQQSR DHLGEGLADS ENSBTAP00000009103/1-1350 RLVYWLEAAL ERQRLEMDRQ LTLQQRGHEQ HVQLLLQQSR DHLGEGLADS bmy_15712T0/1-1362 RLVYWLEVAL ERQRLEMDRQ LTLQQKEHEQ SIQLLLQQSR DHLGEGLADS BACU016086/1-1245 RLVYWLEVAL ERQRLEMDRQ LTLQQKEHEQ SIQLLLQQSR DHLGEGLADS 1301 1350 ENSTTRP00000014700/1-892 KRQYETRIQA LEKELGRHMW INQELKQKLS SLNAAGQSR- -GGEKRTLCP ENSP00000377934/1-1343 RRQYEARIQA LEKELGRYMW INQELKQKLG GVNAVGHSR- -GGEKRSLCS ENSBTAP00000009103/1-1350 RRQYETRIQA LEKELGRHVR LNQELKQKLS SLSAASQSRV MGGEKRTPCL bmy_15712T0/1-1362 KRQYETRIQA LEKELGRHMW INQELKQKLS SLNAASQSRV TGGEKRTLCP BACU016086/1-1245 KRQYETRIQA LEKELGRHMW INQELKQKLS RLNAAGQSRV TGGEKRTLCP 1351 1400 ENSTTRP00000014700/1-892 ENRQAPGSED EPHPAPEPLW QPPVTEGVPR PREEMRDLVH APLPLTWKRS ENSP00000377934/1-1343 EGRQAPGNED ELHLAPELLW LSPLTEGAPR TREETRDLVH APLPLTWKRS ENSBTAP00000009103/1-1350 ENRQAPGSED ELYPAPEPLW QPTGMEGAPR PREEMRDLVH APLPLTWKRS bmy_15712T0/1-1362 ENRQAPGSED EPHPAPEPLW QPPVTEGVPR AREEMRDLVH APLPLTWKRS BACU016086/1-1245 ENRQAPGSED EPHPAPEPLW QPPITEGVPR AREEMRDLVH APLPLTWKRS 1401 1450 ENSTTRP00000014700/1-892 SLCSEEQGSP EELRQREAAE PLVGRMLPVG EMGLPRNLGP LPKPRRELRR ENSP00000377934/1-1343 SLCGEEQGSP EELRQREAAE PLVGRVLPVG EAGLPWNFGP LSKPRRELRR ENSBTAP00000009103/1-1350 SLCSEEQGSP EELRQRDAAE LPVGRVLPVG EAGLPWNLGP LAKPRRELRR bmy_15712T0/1-1362 SLCSEEQGSP EELRQREAAE PLVGRMLPVG EMGLPWNLGP LPKPRRELRR BACU016086/1-1245 SLCSEEQGSP EELRQREAAE PLVGRMLPVG EMGLPWNLGP LPKPRRELRR 1451 1500 ENSTTRP00000014700/1-892 TSPGMIDVRK NPL ENSP00000377934/1-1343 ASPGMIDVRK NPL ENSBTAP00000009103/1-1350 VSPGMIDVRK NPL bmy_15712T0/1-1362 TSPGMIDVRK NPL BACU016086/1-1245 TSPGMIDVRK NPL