KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:16 2014 Check: 00 .. Name: ENSP00000268053/1-521 Len: 540 Check: 3359 Weight: 1.00 Name: ENSBTAP00000009106/1-431 Len: 540 Check: 7539 Weight: 1.00 Name: bmy_11975T0/1-358 Len: 540 Check: 2545 Weight: 1.00 Name: BACU017917/1-497 Len: 540 Check: 4844 Weight: 1.00 Name: ENSTTRP00000007543/1-518 Len: 540 Check: 7735 Weight: 1.00 // 1 50 ENSP00000268053/1-521 MLAKGLPPRS VLVKGCQTFL SAPREGLGRL RVPTGEGAGI STRSPRPFNE ENSBTAP00000009106/1-431 ---------- ---------- ---------- ---------- ---------- bmy_11975T0/1-358 ---------- ---------- ---------- ---------- ---------- BACU017917/1-497 MLARGLPLHS VLVRGCQPLL STPREGLGHP RVGTGEGAGI STKTPRPFNE ENSTTRP00000007543/1-518 MLARGLPLHS VLVRGCQPLL STPREGLGHP RVGTGEGAGI STKTPRPFNE 51 100 ENSP00000268053/1-521 IPSPGDNGWL NLYHFWRETG THKVHLHHVQ NFQKYGPIYR EKLGNVESVY ENSBTAP00000009106/1-431 ---------- ---------- ---------- ---------R EKLGNLESVY bmy_11975T0/1-358 ---------- --MISWLEAA AAE------- ---------R VEQG------ BACU017917/1-497 IPTPGDNGWL NLYRFWREKG SQKIHYHHVQ NFQKYGPIYR EKLGNLESVY ENSTTRP00000007543/1-518 IPTPGDNGWL NLYRFWREKG SQKIHYHHVQ NFQKYGPIYR EKLGNLESVY 101 150 ENSP00000268053/1-521 VIDPEDVALL FKSEGPNPER FLIPPWVAYH QYYQRPIGVL LKKSAAWKKD ENSBTAP00000009106/1-431 IIHPEDVAHL FKFEGSYPER YDIPPWLAYH RYYQKPIGVL FKKSGTWKKD bmy_11975T0/1-358 ---PE----- ----GP---- ---------- --------CF LRKAGAWKKD BACU017917/1-497 IIDPEDVALL FKFEGPNPER YNIPPWVAYH QYYQKPIGVL LK-------- ENSTTRP00000007543/1-518 IIDPEDVALL FKFEGPNPER YNIPPWVAYH QYYEKPIGVL LKKAGAWKKD 151 200 ENSP00000268053/1-521 RVALNQEVMA PEATKNFLPL LDAVSRDFVS VLHRRIKKAG SGNYSGDISD ENSBTAP00000009106/1-431 RVVLNTEVMA PEAIKNFIPL LNPVSQDFVS LLHKRIKQQG SGKFVGDIKE bmy_11975T0/1-358 RLVLNTEVMA PEAIKNFIPL LNPVSQDFVG VLHRRIKQQG SGKFSGDIRE BACU017917/1-497 ---------- ---------- ---------- ----RIKQQG SGKFSGDIRE ENSTTRP00000007543/1-518 RLVLNTEVMA PEAIKNFIPL LNPVSQDFVG VLHRRIKQQG SGKFSGDIRE 201 250 ENSP00000268053/1-521 DLFRFAFESI TNVIFGERQG MLEEVVNPEA QRFIDAIYQM FHTSVPMLNL ENSBTAP00000009106/1-431 DLFHFAFESI TNVMFGERLG MLEETVNPEA QKFIDAVYKM FHTSVPLLNV bmy_11975T0/1-358 DLFRFAFESI TNVMFGERLG MLEEVVDPEA QKFIDAVYQM FHTSVPMLNL BACU017917/1-497 DLFRFAFESI TNVMFGERLG MLEEVVDPEA QKFIDAVYQM FHTSVPMLNL ENSTTRP00000007543/1-518 DLFRFAFESI TNVMFGERLG MLDEVVDPEA QKFIDAVYQM FHTSVPMLNL 251 300 ENSP00000268053/1-521 PPDLFRLFRT KTWKDHVAAW DVIFSKADIY TQNFYWELRQ KGSVHHDYRG ENSBTAP00000009106/1-431 PPELYRLFRT KTWRDHVAAW DTIFNKAEKY TEIFYQDLRR KTEFRN-YPG bmy_11975T0/1-358 PPDLFRMFRT KTWRDHVAAW DIIFNK---- ---------- ---------G BACU017917/1-497 PPDLFRLFRT KTWRDHVAAW DIIFNKAEKY TENFYWDLRR KREFTN-YPG ENSTTRP00000007543/1-518 PPDLFRLFRT KTWRDHVAAW DIIFNKAEKY TENFYWDLRR KR--VH-YPG 301 350 ENSP00000268053/1-521 ILYRLLGDSK MSFEDIKANV TEMLAGGVDT TSMTLQWHLY EMARNLKVQD ENSBTAP00000009106/1-431 ILYCLLKSEK MLLEDVKANI TEMLAGGVDT TSMTLQWHLY EMARSLNVQE bmy_11975T0/1-358 ILYRLLGNDK LLSEDVKANI TEMLAGGVDT TSMTLQWHLY EMARSLNVQD BACU017917/1-497 ILYRLLGNEK LLSEDVKANI TEMLAGGVDT TSMTLQWHLY EMARSLNVQD ENSTTRP00000007543/1-518 ILYRLLGNDK LLSEDVKANI TEMLAGGVDT TSMTLQWHLY EMARSLNVQD 351 400 ENSP00000268053/1-521 MLRAEVLAAR HQAQGDMATM LQLVPLLKAS IKETLR---- ---------- ENSBTAP00000009106/1-431 MLREEVLNAR RQAEGDISKM LQMVPLLKAS IKETLR---- ---------- bmy_11975T0/1-358 MLREEVLNAR RQAQGDISKM LQL------- ---------- ---------- BACU017917/1-497 MLREEVLNAR RQAQGDTSKM LQLVPLLKAS IKETLRQARH HRCLSPPPPT ENSTTRP00000007543/1-518 MLREEVLNAR RQAQGDISKM LQLVPLLKVX XXXXXX---- ---------- 401 450 ENSP00000268053/1-521 -----LHPIS VTLQRYLVND LVLRDYMIPA KTLVQVAIYA LGREPTFFFD ENSBTAP00000009106/1-431 -----LHPIS VTLQRYPESD LVLQDYLIPA KTLVQVAIYA MGRDPAFFSS bmy_11975T0/1-358 ---------- ----RYLAND LVLRDYMIPA KTLVQVAIYA MGRDPAFFSN BACU017917/1-497 NPWAGLHPIS VTLQRYLASD LVLRDYMIPA KTLVQVAIYA MGRDPAFFSN ENSTTRP00000007543/1-518 -----LHPIS VTLQRYLAND LVLRDYMIPA KTLVQVAIYA MGRDPAFFSN 451 500 ENSP00000268053/1-521 PENFDPTRWL SKDKNITYFR NLGFGWGVRQ CLGRRIAELE MTIFLINMLE ENSBTAP00000009106/1-431 PDKFDPTRWL SKDKDLIHFR NLGFGWGVRQ CVGRRIAELE MTLFLIHILE bmy_11975T0/1-358 PDKFDPTRWL GKDRDLIHFR NLGFGWGVRQ CVGRRIAELE MTLFLIHILE BACU017917/1-497 PDKFDPTRWL GKDRDLIHFR NLGFGWGVRQ CVGRRIAELE MTLFLIHILE ENSTTRP00000007543/1-518 PDKFDPTRWL GKDRDLIHFR NLGFGWGVRQ CVGRRIAELE MTLFLIHILE 501 550 ENSP00000268053/1-521 NFRVEIQHLS DVGTTFNLIL MPEKPISFTF WPFNQEATQQ ENSBTAP00000009106/1-431 NFKVEMQHIG DVDTIFNLIL TPDKPIFLVF RPFNQDPPQA bmy_11975T0/1-358 NFKVELQHLS DVDTIFNLIL MPDKPIFLVF QPFNQDPPQA BACU017917/1-497 NFKVELQHLS DVDTIFNLIL MPDKPIFLVF QPFNQDPPQA ENSTTRP00000007543/1-518 SFKVELQHLS DVDTIFNLIL MPDKPIFLVF QPFNQDPPQA