KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:16 2014 Check: 00 .. Name: ENSTTRP00000007185/1-414 Len: 489 Check: 7361 Weight: 1.00 Name: ENSP00000263212/1-454 Len: 489 Check: 8213 Weight: 1.00 Name: ENSBTAP00000009109/1-419 Len: 489 Check: 8215 Weight: 1.00 Name: bmy_14730T0/1-433 Len: 489 Check: 9043 Weight: 1.00 Name: BACU017139/1-417 Len: 489 Check: 8198 Weight: 1.00 // 1 50 ENSTTRP00000007185/1-414 ---------- -----MASGT PQQNS---QK AEETPSFLDE LLRDF----- ENSP00000263212/1-454 ---------- -----MSSGA PQKSSPMASG AEETPGFLDT LLQDF----- ENSBTAP00000009109/1-419 ---------- -----MASGA PQQNG---QT AEETPGFLDT LLRDF----- bmy_14730T0/1-433 MKTNDPAAAP RDALGMASGT PQQNS---QK AEENPSFLDV LLCDF----- BACU017139/1-417 MKTNDPAAAP RDALGMASGT PQQNS---QK AEENPSFLDV LLRDFNSQKA 51 100 ENSTTRP00000007185/1-414 ---------- ----PAPLGP ESPLPWKVPG TMLSQEEVEG ELAELAMGFL ENSP00000263212/1-454 ---------- ----PALLNP EDPLPWKAPG TVLSQEEVEG ELAELAMGFL ENSBTAP00000009109/1-419 ---------- ----PAPLSP ESPLPWKVPG PVLTLEEVEG ELAEVAMGFL bmy_14730T0/1-433 ---------- ----PAPLGP ESPLPWKVPG TMLSQEEVEG ELAELAMGFL BACU017139/1-417 EENPSLLDAL LRDFPAPLGP ESPLPWKVPG TMLSQEEVEG ELAELAMGFL 101 150 ENSTTRP00000007185/1-414 SSRSAPPPLA ACLAHEAVSQ LLQTDLSEFR KLPEQEEEE- ---------A ENSP00000263212/1-454 GSRKAPPPLA AALAHEAVSQ LLQTDLSEFR KLPREEEEE- EEDDDEEEKA ENSBTAP00000009109/1-419 SSRSAPPPLA ACLAHEAVSQ LLQSDLSEFR KLPEQEEEDG DRGDRAEEKA bmy_14730T0/1-433 SSRSAPPPLA ACLAHEAVSQ LLQTDLSEFR KLPEQEEEE- ---------A BACU017139/1-417 SSRSAPPPLA ACLAHEAVSQ LLQTDLSEFR KLPEQEEEE- ---------A 151 200 ENSTTRP00000007185/1-414 PVTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263212/1-454 PVTLLDAQSL AQSFFNRLWE VAGQWQKQVP LAARASQRQW LVSIHAIRNT ENSBTAP00000009109/1-419 PVTLLDAAGL ARSLFDRLWQ ACGQWQQQVP AAARAPQRQW LVSAHAIRNA bmy_14730T0/1-433 PVTLLDAVGL ARSLFDRLWE VCSQWQKQVP VAARVPQRQW LVSMHAIRNA BACU017139/1-417 PVTLVPSNC- ---------- --------IP SKSRFTLDQ- --------NC 201 250 ENSTTRP00000007185/1-414 XXXXXXXXXX XXXXXXXXXX XDSVDR-YFA VFDDHGGVDA ARYASVHVHA ENSP00000263212/1-454 RRKMEDRHVS LPSFNQLFGL SDPVNRAYFA VFDGHGGVDA ARYAAVHVHT ENSBTAP00000009109/1-419 RRRMEDRHVC LPAFNLLFGL EDSVDRAYFA VFDGHGGADA ARYASVHVHA bmy_14730T0/1-433 RRRMEDRHVC LPAFNLLFGL SDSVDRAYFA VFDGHGGVDA ARYASVHVHA BACU017139/1-417 RERG------ -PVGQALAEC WDSVDRAYFA VFDGHGGVDA ARYASVHVHA 251 300 ENSTTRP00000007185/1-414 VAAHRPELPT DPAGALRAAF RCTDEMFLWK ARRERLQSGT TGVCALIAGN ENSP00000263212/1-454 NAARQPELPT DPEGALREAF RRTDQMFLRK AKRERLQSGT TGVCALIAGA ENSBTAP00000009109/1-419 VAARRPELAA DPAEALRAAF RRTDEMFLWK ARRERLQSGT TGVCALIAGN bmy_14730T0/1-433 VAAHRPELPT DPAGALRAAF RCTDEMFLWK ARRERLQSGT TGVCALIAGN BACU017139/1-417 VAAHRPELPT DPTGALRAAF RCTDEMFLWK ARRERLQSGT TGVCALIAGS 301 350 ENSTTRP00000007185/1-414 TLHVAWLGDS QVVLVQQGQV VKLMEPHRPE RQDEKDRIEA LGGFVSHMDC ENSP00000263212/1-454 TLHVAWLGDS QVILVQQGQV VKLMEPHRPE RQDEKARIEA LGGFVSHMDC ENSBTAP00000009109/1-419 TLHVAWLGDS QVLLVRQGQA VKLMEPHRPE RQDEKDRIEA LGGFVSHMDC bmy_14730T0/1-433 TLHVAWLGDS QVVLVQQGQV VKLMEPHRPE RQDEKDRIEA LGGFVSHMDC BACU017139/1-417 TLHVAWLGDS QVVLVQQGQV VKLMEPHRPE RQDEKDRIEA LGGFVSHMDC 351 400 ENSTTRP00000007185/1-414 WRVNGTLAVS RAIXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXDV ENSP00000263212/1-454 WRVNGTLAVS RAIGDVFQKP YVSGEADAAS RALTGSEDYL LLACDGFFDV ENSBTAP00000009109/1-419 WRVNGTLAVS RAIGDVFQKP YVSGEADAAS WELTGSEEYL LLACDGFFDV bmy_14730T0/1-433 WRVNGTLAVS RAIGDVFQKP YVSGEADTAS RELTGSEDYL LLACDGFFDV BACU017139/1-417 WRVNGTLAVS RAIGDVFQKP YVSGEADTAS QELTGSEDYL LLACDGFFDV 401 450 ENSTTRP00000007185/1-414 VPHGGAG--V RSHLVGQQGS GLRVAEELVA AARERGSHDN ITVMVVFLRE ENSP00000263212/1-454 VPHQEVVGLV QSHLTRQQGS GLRVAEELVA AARERGSHDN ITVMVVFLRD ENSBTAP00000009109/1-419 VPHQEVASLV RSRLAGPQGS GLRVAEELVA AARERGSHDN ITVVVVFLRD bmy_14730T0/1-433 VPHQEVAGLV RSHLVGQQGS GLRVAEELVA AARERGSHDN ITVMVVFLRD BACU017139/1-417 VPHQEVAGLV RSHLVGQQGS GLRVAEELVA AARERGSHDN ITVMVVFLRD 451 500 ENSTTRP00000007185/1-414 PR-LLE---- ---------- ---------- PETDAVPRS ENSP00000263212/1-454 PQELLEGGNQ GEGDPQAEGR RQDLPSSLPE PETQAPPRS ENSBTAP00000009109/1-419 PQDLLE---- ---------- ---------- --------- bmy_14730T0/1-433 PRDLLE---- ---------- ---------- PVTDAVPRS BACU017139/1-417 PRDLLE---- ---------- ---------- PETDAVPRS