KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:37:19 2014 Check: 00 ..
Name: bmy_04056T0/1-549 Len: 1064 Check: 5011 Weight: 1.00
Name: ENSP00000362485/1-1013 Len: 1064 Check: 760 Weight: 1.00
Name: ENSBTAP00000009123/1-1038 Len: 1064 Check: 6252 Weight: 1.00
Name: BACU016275/1-997 Len: 1064 Check: 470 Weight: 1.00
Name: ENSTTRP00000014872/1-996 Len: 1064 Check: 48 Weight: 1.00
//
1 50
bmy_04056T0/1-549 ---------- ---------- ---------- ---------- ----------
ENSP00000362485/1-1013 MVVDFCRRFV ARSLCIILMK HFCSS----- ---------- ----------
ENSBTAP00000009123/1-1038 ---------- ----MDPLTK GPCGNQMAQT LMWKAKSSLS FGIQPLQTWP
BACU016275/1-997 ---------- --------MK HFCSS----- ---------- ----------
ENSTTRP00000014872/1-996 ---------- --------MK HFCSS----- ---------- ----------
51 100
bmy_04056T0/1-549 ---------- ---------- ---------- ---------- ----------
ENSP00000362485/1-1013 ---------- --SVSEDLGC RRGDFSRKHY GSVELLISSD ADGAIQRAGR
ENSBTAP00000009123/1-1038 AKDPEVEAQV NLSVSEDLGC RRGDFSRKHY GSVELLISSD ADGAIQRAGR
BACU016275/1-997 ---------- --SVSEDLGC RRGDFSRKHY GSVELLISSD ADGAIQRAGR
ENSTTRP00000014872/1-996 ---------- --SVSEDLGC RRGDFSRKHY GSVELLISSD ADGAIQRAGR
101 150
bmy_04056T0/1-549 ---------- ---------- ---------- --------MF STQAENIFRG
ENSP00000362485/1-1013 FRVENGSSDE NATALPGTWR RTDVHLENPE YHTRWYFKYF LGQVHQNYIG
ENSBTAP00000009123/1-1038 FRVENGSSDE NATALPGTWR RTDVHLENPE YHTRWYFKYF LGQVHQNYIG
BACU016275/1-997 FRVENGSSDE NATALPGTWR RTDVHLENPE YHTRWYFKYF LGQVHQNYIG
ENSTTRP00000014872/1-996 FRVENGSSDE NATALPGTWR RTDVHLENPE YHTRWYFKYF LGQVHQNYIG
151 200
bmy_04056T0/1-549 K--------- ---------- -----RTTLW ---------- ---PTLAL--
ENSP00000362485/1-1013 NDAEKSPFFL SVTLSDQNNQ RVPQYRAILW RKTGTQKICL PYSPTKTLSV
ENSBTAP00000009123/1-1038 NDAEKSPFFL SVTLSDQNNQ RVPQYRAILW RKTGTQKICL PYSPTKTLSV
BACU016275/1-997 NDAEKSPFFL SVTLSDQNNQ RVPQYRAILW RKTGTQKICL PYSPTKTLSV
ENSTTRP00000014872/1-996 NDAEKSPFFL SVTLSDQNNQ RVPQYRAILW RKTGTQKICL PYSPTKTLSV
201 250
bmy_04056T0/1-549 ---------- -----PTGVY RPP------- ---------- --GI------
ENSP00000362485/1-1013 KSILSAMNLD KFEKGPREIF HPEIQKDLLV LEEQEGSVNF KFGVLFAKDG
ENSBTAP00000009123/1-1038 KSILSAMNLD KFEKGPREIF HPEIQKDLLV LEEQEGSVNF KFGVLFAKDG
BACU016275/1-997 KSILSAMNLD KFEKGPREIF HPEIQKDLLV LEEQEGSVNF KFGVLFAKDG
ENSTTRP00000014872/1-996 KSILSAMNLD KFEKGPREIF HPEIQKDLLV LEEQEGSVNF KFGVLFAKDG
251 300
bmy_04056T0/1-549 ----QGLFAS EIGF-PIQST LSVLPGRLTF ---------- ----------
ENSP00000362485/1-1013 QLTDDEMFSN EIGSEPFQKF LNLLGDTITL KGWTGYRGGL DTKNDTTGIH
ENSBTAP00000009123/1-1038 QLTDDDMFSN EIGSDAFQKF LNLLGDTITL KGWTGYRGGL DTKNDTTGIH
BACU016275/1-997 QLTDDDMFSN EIGSDAFQKF LNLLGDTITL KGWTGYRGGL DTKNDTTGIH
ENSTTRP00000014872/1-996 QLTDDDMFSN EIGSDAFQKF LNLLGDTITL KGWTGYRGGL DTKNDTTGMH
301 350
bmy_04056T0/1-549 ---------- ---------- ---------- ---------- ----------
ENSP00000362485/1-1013 SVYTVYQGHE IMFHVSTMLP YSKENKQQVE RKRHIGNDIV TIVFQEGEES
ENSBTAP00000009123/1-1038 SVYTIYQGHE IMFHVSTMLP YSKENKQQVE RKRHIGNDIV TIVFQEGEEP
BACU016275/1-997 SVYTIYQGHE IMFHVSTMLP YSKENKQQVE RKRHIGNDIV TIVFQEGEEP
ENSTTRP00000014872/1-996 SVYTIYQGHE IMFHVSTMLP YSKENKQQVE RKRHIGNDIV TIVFQEGEEP
351 400
bmy_04056T0/1-549 -----PSI-- ---------- ---------- ---------- ----------
ENSP00000362485/1-1013 SPAFKPSMIR SHFTHIFALV RYNQQNDNYR LKIFSEESVP LFGPPLPTPP
ENSBTAP00000009123/1-1038 SPAFKPSMIR SHFTHIFALV RYDQQKDNYR LKIFSEESVP LFGPPLPSPP
BACU016275/1-997 SPAFKPSMIR SHFTHIFALV RYDQQKDNYR LKIFSEESVP LFGPPLPSPP
ENSTTRP00000014872/1-996 SPAFKPSMIR SHFTHIFALV RYDQQKDNYR LKIFSEESVP LFGPPLPSPP
401 450
bmy_04056T0/1-549 ---------- ---------- ---------- ---------- ----------
ENSP00000362485/1-1013 VFTDHQEFRD FLLVKLINGE KATLETPTFA QKRRRTLDML IRSLHQDLMP
ENSBTAP00000009123/1-1038 VFTDHQEFRD FLLVKLINGE KATLETPTFA QKRRRTLDML IRSLYQDLMP
BACU016275/1-997 VFTDHQEFRD FLLVKLINGE KATLETPTFA QKRRRTLDML IRSLYQDLMP
ENSTTRP00000014872/1-996 VFTDHQEFRD FLLVKLINGE KATLETPTFA QKRRRTLDML IRSLYQDLMP
451 500
bmy_04056T0/1-549 ---------- ---------- ---------- ---------- ----------
ENSP00000362485/1-1013 DLHKNMLNRR SFSDVLPESP KSARKKEEAR QAEFVRIGQA LKLKSIVRGD
ENSBTAP00000009123/1-1038 DLHKNMLNRR SFSDVLPESP KSARKKEEAR QAEFVRIGQA LKLKSIVRGD
BACU016275/1-997 DLHKNMLNRR SFSDVLPESP KSARKKEEAR QAEFVRIGQA LKLKSIVRGD
ENSTTRP00000014872/1-996 DLHKNMLNRR SFSDVLPESP KSARKKEEAR QAEFVRI-RA LKLKSIVRGD
501 550
bmy_04056T0/1-549 -------SSV CFIPP----- ---------- ---------- ----------
ENSP00000362485/1-1013 APSSLAASGI CKKEPWEPQC FCSNFPHEAV CADPWGQALL VSTDAGVLLV
ENSBTAP00000009123/1-1038 APSSLVASGI CKKEPWEPQC FCSNFPHEAV CADPWGQALL VSTDAGVLLV
BACU016275/1-997 APSSLVAAGI CKKEPWEPQC FCSNFPHEAV CADPWGQALL VSTDAGVLLV
ENSTTRP00000014872/1-996 APSSLVAAGI CKKEPWEPQC FCSNFPHEAV CADPWGQALL VSTDAGVLLV
551 600
bmy_04056T0/1-549 ---------- ---------- ---------- ----GKDARL FVFRLSAVQR
ENSP00000362485/1-1013 DDDLPSVPVF DRTLPVKQMH VLETLDLLVL RADKGKDARL FVFRLSALQK
ENSBTAP00000009123/1-1038 DDDLPSVPVF DKTLPVKQMH VLEALDLLIL RADKGKDARI FVFRLSAVQR
BACU016275/1-997 DDDLPSVPVF DKTLPVKQMH VLEALDLLIF RADKGKDARL FVFRLSAVQR
ENSTTRP00000014872/1-996 DDDLPSVPVF DKTLPVKQMH VLETLDLLIF RADKGKDARL FVFRLSAVQR
601 650
bmy_04056T0/1-549 GMEGKQAVKG KYDCRENKLE KTKGCHLYAI NTHHSRELRI VVAIRNKLLL
ENSP00000362485/1-1013 GLEGKQAGKS RSDCRENKLE KTKGCHLYAI NTHHSRELRI VVAIRNKLLL
ENSBTAP00000009123/1-1038 GIEGKQAVKG KCDCRENKLE KTKGCHLYAI NTHHSKELRI VVAIRNKLLL
BACU016275/1-997 GMEGKQAVKG KYDCRENKLE KTKGCHLYAI NTHHSRELRI VVAIRNKLLL
ENSTTRP00000014872/1-996 GIEGKQAVKG KYDCRENKLE KTKGCHLYAM NTHHSRELRI VVAIRNKLLL
651 700
bmy_04056T0/1-549 VTRKHSKPSG VTGMSLLSPL SESPVEEFQY IREICLSDSP SVMTLVDGPL
ENSP00000362485/1-1013 ITRKHNKPSG VTSTSLLSPL SESPVEEFQY IREICLSDSP MVMTLVDGPA
ENSBTAP00000009123/1-1038 ITRKHNKPSG VTGMALLSPL SESPVEEFQY IREICLSDSP AVMTLVDGPT
BACU016275/1-997 VTRKHSKTSG VTGMSLLSPL SESPVEEFQY IREICLSDSP SVMTLVDGPS
ENSTTRP00000014872/1-996 VTRKHSKPSG VTGTSLLSPL PESPVEEFQY IRXXXXXXXP SVMTLVDGPS
701 750
bmy_04056T0/1-549 EESDNLICVA YRHQFDVVNE STGEAFRLHH VEANRVNFVA AIDVYEDGEA
ENSP00000362485/1-1013 EESDNLICVA YRHQFDVVNE STGEAFRLHH VEANRVNFVA AIDVYEDGEA
ENSBTAP00000009123/1-1038 EESDNLICVA YRHQFDVVNE STGEAFRLHH VEASRVNFVA AIDVYEDGEA
BACU016275/1-997 EESDNLICVA YRHQFDVVNE STGEAFRLHH VEANRVNFVA AIDVYEDGEA
ENSTTRP00000014872/1-996 EESDNLICVA YRHQFDVVNE STGEAFRLHH VEANRVNFVA AIDVYEDGEA
751 800
bmy_04056T0/1-549 GLLLCYNYSC IYKKVCPFNG GSFLVQPSAS DFQFCWNQAP RAIGTGWELT
ENSP00000362485/1-1013 GLLLCYNYSC IYKKVCPFNG GSFLVQPSAS DFQFCWNQAP ----------
ENSBTAP00000009123/1-1038 GLLLCYNYSC IYKKVCPFNG GSFLVQPSAS DFQFCWNQAP ----------
BACU016275/1-997 GLLLCYNYSC IYKKVCPFNG GSFLVQPSAS DFQFCWNQAP ----------
ENSTTRP00000014872/1-996 GLLLCYNYSC IYKKVCPFNG GSFLVQPSAS DFQFCWNQAP ----------
801 850
bmy_04056T0/1-549 PCCLAVCAFP YLLAFTTDSM EIRLVVNGNL VHTAVVPQLQ LVASRSDIYF
ENSP00000362485/1-1013 --YAIVCAFP YLLAFTTDSM EIRLVVNGNL VHTAVVPQLQ LVASRSDIYF
ENSBTAP00000009123/1-1038 --CAIVCAFP YLLAFTTDSM EIRLVVNGNL VHTAVVPQLQ LVASRSDIYF
BACU016275/1-997 --CAIVCAFP YLLAFTTDSM EIRLVVNGNL VHTAVVPQLQ LVASRSDIYF
ENSTTRP00000014872/1-996 --CAIVCAFP YLLAFTTDSM EIRLVVNGNL VHTAVVPQLQ LVASRSDIYF
851 900
bmy_04056T0/1-549 TATASVNEVS SGGSSKGASS HNSPQTPPGR DTPVFPSSLG EGEIQSKNLY
ENSP00000362485/1-1013 TATAAVNEVS SGGSSKGASA RNSPQTPPGR DTPVFPSSLG EGEIQSKNLY
ENSBTAP00000009123/1-1038 TATASANEVS SGGSSKGASA HNSPQTPPSR DTPVFPSSLG EGEIQSKNLY
BACU016275/1-997 TATASVNEVS SGGSSKGASA HNSPQTPPGR DTPVFPSSLG EGEIQSKNLY
ENSTTRP00000014872/1-996 TATASVNEVS SGGSSKGASA HNSPQTPPGR DTPVFPSSLG EGEIQSKNLY
901 950
bmy_04056T0/1-549 KIPLRNLVGR SIERPLKSPL VSKVITPPTS IGIGIAAIPV THSLSLSRME
ENSP00000362485/1-1013 KIPLRNLVGR SIERPLKSPL VSKVITPPTP ISVGLAAIPV THSLSLSRME
ENSBTAP00000009123/1-1038 KIPLRNLVGR SIERPLKSPL VSKVITPPTS IGIGIAAIPV THSLSLSRME
BACU016275/1-997 KIPLRNLVGR SIERPLKSPL VSKVITPPTS IGIGIAAIPV THSLSLSRME
ENSTTRP00000014872/1-996 KIPLRNLVGR SIERPLKSPL VSKVITPPTS IGIGIAAIPV THSLSLSRME
951 1000
bmy_04056T0/1-549 IKEIASRTRR ELLGLSDEGG PRAEGAPKPK SKARKRLEEN QGGPKPGTVR
ENSP00000362485/1-1013 IKEIASRTRR ELLGLSDEGG PKSEGAPKAK SKPRKRLEES QGGPKPGAVR
ENSBTAP00000009123/1-1038 IKEIASRTRR ELLGLSDDGG SRSEGAPKPK SKARKRLEEN QGGPRPGTVR
BACU016275/1-997 IKEIASRTRR ELLGLSDEGG PRAEGAPKPK SKARKRLEEN QGGPKPGTVR
ENSTTRP00000014872/1-996 IKEIASRTRR ELLGLSDEGG PRAEGAPKPK SKARKRVEEN QGGPKPGTVR
1001 1050
bmy_04056T0/1-549 STSSERITLS SLESPSTSEA NPEGRYQSTG SDPDPVAERE GSPVWGSSPF
ENSP00000362485/1-1013 SSSSDRIPSG SLESASTSEA NPEG--HSAS SDQDPVADRE GSPVSGSSPF
ENSBTAP00000009123/1-1038 STSSDRITSS SLESPSTSEA NPNGRYQSTS SDPDPVAEQE GSPVWGSCPF
BACU016275/1-997 STSSERITLS SLESPSTSEA NPEGRYQSTS SDPDPVAERE GSPVWGSSPF
ENSTTRP00000014872/1-996 STSSERITSS SLESPSTSEA NPEGRYQSTS SDPDPVAERE GSPVWGSSPF
1051 1100
bmy_04056T0/1-549 QLTASSDEDI IDLK
ENSP00000362485/1-1013 QLTAFSDEDI IDLK
ENSBTAP00000009123/1-1038 QLTAFSDEDM IDLK
BACU016275/1-997 QLTASSDEDI IDLK
ENSTTRP00000014872/1-996 QLTASSDEDI IDLK