KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:21 2014 Check: 00 .. Name: ENSP00000364631/1-725 Len: 842 Check: 4066 Weight: 1.00 Name: ENSBTAP00000009131/1-740 Len: 842 Check: 9896 Weight: 1.00 Name: ENSTTRP00000000294/1-720 Len: 842 Check: 4984 Weight: 1.00 Name: bmy_04153T0/1-762 Len: 842 Check: 7614 Weight: 1.00 Name: BACU009576/1-780 Len: 842 Check: 2615 Weight: 1.00 // 1 50 ENSP00000364631/1-725 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009131/1-740 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000294/1-720 ---------- ---------- ---------- ---------- ---------- bmy_04153T0/1-762 MLHPPADLYD LPGEPPELLH FKTAGQEKDF QQIPPAPQPC ARPGLANSND BACU009576/1-780 ---------- ---------- ---------- ---------- ------MEES 51 100 ENSP00000364631/1-725 ---------- ---------- ---------- ---------- -MESGRGSST ENSBTAP00000009131/1-740 ---------- ---------- ---------- ---------- -MEPGRGSST ENSTTRP00000000294/1-720 ---------- ---------- ---------- ---------- -MEPGGVSSI bmy_04153T0/1-762 LERSQQGTWH PAFHLSVLVE SDSLRKPPAS PSKSSENSTL RMEPGGGSSM BACU009576/1-780 LIQCQE---- ---HLPCCIL ATFSRKPPAS PSKSSENSPL RMEPGGGSSI 101 150 ENSP00000364631/1-725 PPGPIAALGM PDTGPGSSSL -------GKL QALPVGPRAH CGDPVSLAAA ENSBTAP00000009131/1-740 PPAPSATMEE PDAGPNNSSL EQPSTDPGKL PALPVGPGTH HGELASGSPG ENSTTRP00000000294/1-720 PPAPIATRGE PDAGPSSSSL -------GKL RALPVGPGAH CGDPASGSPG bmy_04153T0/1-762 PPAPIATRGE PEAGPSSSSL EHPSTDPGKL RALPVGPGAH CGDPASGSPG BACU009576/1-780 PPAPIATRGE PDAGPSSSSL EHPSTDPGKL RALPVGPGAH CGDPASGSPG 151 200 ENSP00000364631/1-725 GDGSP-DIGP TGELSGSLKI PNRDSGIDSP SSSVAGENFP CEEGLEAGPS ENSBTAP00000009131/1-740 SQASAGDMSS VGEASSS-KI PNRDSGIDSP SCSVVSEHF- CEDSGEAGPG ENSTTRP00000000294/1-720 SQASVGDVGS VSEPSSGTKI PNRDSGIDSP SCSVVGEHFS CEDGSEAGPG bmy_04153T0/1-762 SQASAGDMGS VGEPSSGTKI PNRDSGIDSP SCSVVGEHFS CEDGSEAGPG BACU009576/1-780 SQASAGDMGS VGEPSSGTKI PNRDSGIDSP SCSVVGEHFS CEDGSEAGPG 201 250 ENSP00000364631/1-725 PTVLGAHAEM ALDSQVPKVT PQEEADSDVG ----EEPDSE NTPQKADKDA ENSBTAP00000009131/1-740 TIIKGPHPGT ALGSK----S PQEEADSDAG EGSSEEPDPE NNPSKVDMDP ENSTTRP00000000294/1-720 PTIKGLHLET APGGK----A PREEADSDMG EGSSEEPDPE NSPLRADADP bmy_04153T0/1-762 PTIKGLHLET APGGK----A PQEEADSDMG EGSSEEPDPE NSPLRADADP BACU009576/1-780 PTIKGLHLET APGGK----A PQEEADSDMG EGSSEEPDPE NSPLRADADP 251 300 ENSP00000364631/1-725 GLAQHSGPQK LLHIAQELLH TEETYVKRLH LLDQVFCTRL TDAGIPPEVI ENSBTAP00000009131/1-740 --AKCSEPQK LLHIAQELLH TEETYVKRLY LLDQVFCTGL TEAGIPSEVT ENSTTRP00000000294/1-720 --AKCAEPQK LLHIAQELLH TEETYVKRLH LLDQVFCTRL MEAGIPSEVT bmy_04153T0/1-762 --AKCSEPQK LLHIAQELLH TEETYVKRLH LLDQ------ ---------- BACU009576/1-780 --AKCSEPQK LLHIAQELLH TEETYVKRLH LLDQVFCTRL MEAGIPSEVT 301 350 ENSP00000364631/1-725 MGIFSNISSI HRFHGQFLLP ELKTRITEEW DTNPRLGDIL QKLAPFLKMY ENSBTAP00000009131/1-740 TGIFSNISSI YRFHGQFLLP ELQARITNEW DVNPRLGDIL QKLAPFLKMY ENSTTRP00000000294/1-720 TGIFSNISSI YCFHGKFLLP ELQTRITNEW DTNPRLGDIL QKLAPFLKMY bmy_04153T0/1-762 ---------- ---------- ---------- ---------- ---------- BACU009576/1-780 TGIFSNISSI YCFHGQFLLP ELKTRIMNEW DTNPRLGDIL QKLAPFLKMY 351 400 ENSP00000364631/1-725 GEYVKNFDRA VGLVSTWTQR SPLFKDVVHS IQKQEVCGNL TLQHHMLEPV ENSBTAP00000009131/1-740 GEYVKNFDRA MELVSTWTQR SPVFKDTVQS IQKQELCGNL TLQHHMLEPV ENSTTRP00000000294/1-720 GEYVKNFDRA VELVSTWTQR SPVFKDIVQG IQKQEMCGNL TLQHHMLEPV bmy_04153T0/1-762 -----NFDRA VELVSTWTQR SLVFKDIVQG IQKQEMCGNL TLQHHMLEPV BACU009576/1-780 GEYVKNFDRA VELVSTWTQR SLVFKDIVQG IQKQEMCGNL TLQHHMLEPV 401 450 ENSP00000364631/1-725 QRVPRYELLL KDYLKRLPQD APDRKDAERS LELISTAANH SNAAIRKVEK ENSBTAP00000009131/1-740 QRVPRYELLL KDYLKRLPED APDWKDAERS LELISTAANH SNAAIRKMEK ENSTTRP00000000294/1-720 Q-VPRYELLL KDYLKRLPKD APDWKDA-RS LELISTAANH SNAAIRKMEK bmy_04153T0/1-762 QRVPRYELLL KDYLKRLPED APDWKDAERS LELISTAANH SNAAIRKTEK BACU009576/1-780 QRVPRYELLL KDYLKRLPED APDWKDAERS LELISTAANH SNAAIRKMEK 451 500 ENSP00000364631/1-725 MHKLLEVYEQ LGGEEDIVNP ANELIKEGQI QKLSAKNGTP QDRHLFLFNS ENSBTAP00000009131/1-740 MHKLLEVYER LGGEEDIVNP ANELIKEGHI QKLSAKNGTT QDRHLFLFNS ENSTTRP00000000294/1-720 MHKLLEVYER LGGEEDIVNP ANELIKEGHI QKLSAKNGTT QDRHLFLFNS bmy_04153T0/1-762 MHKLLEVYER LGGEEDIVNP ANELIKEGHI QKLSAKNGTT QDRHLFLFNS BACU009576/1-780 MHKLLEVYER LGGEEDIVNP ANELIKEGHI QKLSAKNGTT QDRHLFLFNS 501 550 ENSP00000364631/1-725 MILYCVPKLR LMGQKFSVRE KMDISGLQVQ DIVKPNTAHT FIITGRKRSL ENSBTAP00000009131/1-740 MILYCVPKLR LMGQKFSVRE KMDISGLQVQ DIVKSGAAHT FIITGKKRSL ENSTTRP00000000294/1-720 MILYCVPKLR LMGQKFSVRE KMDISDLQXX XXXXXXXXXX XXXXXXXXXX bmy_04153T0/1-762 MILYCVPKLR LMGQKFSVRE KMDISGLQVQ DVVKSNAAHT FIITGKKRSL BACU009576/1-780 MILYCVPKLR LMGQKFSVRE KMDISGLQVQ DVVKSNAAPT FIITGKKRSL 551 600 ENSP00000364631/1-725 ELQTRTEEEK KEWIQIIQAT IEKHKQNSET FKAFGGAFSQ DEDPSLSPDM ENSBTAP00000009131/1-740 ELQTRTEEEK KEWIQVIQAT IEKHKQNSQT FKAFSGSFSQ DENSPLTPEP ENSTTRP00000000294/1-720 XXXXXTEEEK KEWIQVIEAT IEKHKQNSQT FKAFSGSFGQ DEDSSLTPDP bmy_04153T0/1-762 ELQTRTEEEK KEWIQVIEAT IEKHKQNSQT FKAFSGSFGQ DEDSSLTPDP BACU009576/1-780 ELQTRTEDEK KEWIQVIEAT IEKHKQNSQT FKAFSGSFGQ DEDSSLTPDP 601 650 ENSP00000364631/1-725 PITSTSPVEP VVTTEGSSGA AGLEPRKLSS KTRRDKEKQS CKSCGETFNS ENSBTAP00000009131/1-740 PMMSPSSEVP AVPANSGGGV SGSEPRRGSS KTRRDKEKQG CSSCGETFNS ENSTTRP00000000294/1-720 PMVSANPEVP AAVPTGGGGA AGLEPRRGSS KTRRDKEKQG CSSCGETFNS bmy_04153T0/1-762 PMVSGNSEVP AVVATGGGGA AGLEPRRGSS KTRRDKEKQG CSSCXETFNS BACU009576/1-780 PMVSANSEVP AVVATGGAGA AGLEPRRGSS KTRRDKEKQG CSSCGETFNS 651 700 ENSP00000364631/1-725 ITKRRHHCKL CGAVICGKCS EFKAENSRQS RVCRDCFLTQ PVAP------ ENSBTAP00000009131/1-740 ITKRKHHCKL CGAVICGKCS EFKAENGRQS RVCKECFLTQ PVAHLNLSLE ENSTTRP00000000294/1-720 ITKRKRHCKL CGAVICGKCS EFKAENGRQS RVCGECFLTQ PVAP------ bmy_04153T0/1-762 ITKRKHHCKL CGAVICGKCS EFKAENGRQS RVCRECFLTQ PVAPSSPSLE BACU009576/1-780 ITKRKHHCKL CGAVICGKCS EFKAENGRQS RVCRECFLTQ PVAPSSPSLE 701 750 ENSP00000364631/1-725 ------ESTE KTPTADPQPS LLCGPLRLSE SGETWSEVWA AIPMSDP--Q ENSBTAP00000009131/1-740 EPLEPKQSTE KPVAAEPPPS LLCGPLQVSD GGTAWSKAWA AISESDSLEL ENSTTRP00000000294/1-720 -------STE KPATVDPPPS LLCGPLLVSD GGTAWSKVWA AISESDSLEL bmy_04153T0/1-762 EPLEPKQSTE KPATVDPLPS LLCGPLQVSD GGTAWSKVWA AISESDSLEL BACU009576/1-780 DPLEPKQSTE KPATVDPLPS LLCGPLQVSD GGTAWSKVWA AISESDSLEL 751 800 ENSP00000364631/1-725 VLHLQGGSQD GRLPRTIPLP SCKLSVPDPE ERLDSGHVWK LQWAKQSWYL ENSBTAP00000009131/1-740 VLHLHEGSQD GQLLHAIPLS GCRVSVLDPA ERLDARHVWQ LQQAQQSLYL ENSTTRP00000000294/1-720 VLHLRGGSQD GQLLHAVPLS GCRVSVPEPA ERLDAGHMWQ LQQAQQSLYL bmy_04153T0/1-762 VLHLRGGSQD GQLLHAIPLS GWRVSVPDPA ERLDAGHVWQ LQQAQQSLYL BACU009576/1-780 VLHLRGGSQD GQVLYAIPLS GWRVSVPDPA ERLDAGHVWQ LQQAQQSLYL 801 850 ENSP00000364631/1-725 SASSAELQQQ WLETLSTAAH GDTAQDSPGA LQLQVPMGAA AP ENSBTAP00000009131/1-740 SAPSAELQQQ WLEALSSAAH RHSSQASLGA PQPQAP---A AP ENSTTRP00000000294/1-720 SAPSAELQQQ WLEALSSAAH GHLAQASPGA QQPQAP---A AP bmy_04153T0/1-762 SAPSAKLQQQ WLEALRSAAH GHPAQASPGA QQPQAP---A AP BACU009576/1-780 SAPSAELQQQ WLEALSSAAH GHPAQASPGA QQPQAP---P AP