KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:37:25 2014 Check: 00 .. Name: ENSP00000420914/1-761 Len: 863 Check: 4956 Weight: 1.00 Name: bmy_14950T0/1-562 Len: 863 Check: 9512 Weight: 1.00 Name: ENSTTRP00000015653/1-709 Len: 863 Check: 1208 Weight: 1.00 Name: ENSBTAP00000009173/1-736 Len: 863 Check: 1535 Weight: 1.00 // 1 50 ENSP00000420914/1-761 ---------- ---------- ---------- ------MVIL EAPH---LLR bmy_14950T0/1-562 MPVSDQAFVT LATNDVYCQG ALVLGQSLRD HRATRRLVVL VTPQVYNLLR ENSTTRP00000015653/1-709 ---------- ---------- ---------- ---------M AVPL---RFD ENSBTAP00000009173/1-736 ---------- ---------- ---------- ---------M ASTL---RFN 51 100 ENSP00000420914/1-761 RKEPETPGLS SRIGPSLCPG FCRKRSVSCC FQNLCNNPME KIISQCRFFV bmy_14950T0/1-562 EFQMIHIDTR RRLGRAYALA FAERGA---- --SVVDWSFS VLRKRYGNYQ ENSTTRP00000015653/1-709 GRVVLVTGAG GGLGRAYALA FAERGA---- --SVV----- ---------- ENSBTAP00000009173/1-736 GRVVLVTGAG GGLGRAYALA FAERGA---- --SVV----- ---------- 101 150 ENSP00000420914/1-761 SMNDLGGDFK GVGKGSLAAD KVVEEIRRRG GKAVANYDSV EEGEKVVKTA bmy_14950T0/1-562 FVNDLGGDFM GV-------- ---------- -------DSV EAGEKVVKTA ENSTTRP00000015653/1-709 -VNDLGGDFK GVGKGSLAAD KVVEEIRRKG GKAVANYDSV EAGEKVVKTA ENSBTAP00000009173/1-736 -VNDLGGDFT GVGKGSLAAD KVVEEIRRKG GKAVANYDSV EEGEKIVKTA 151 200 ENSP00000420914/1-761 LDAFGRIDVV VNNAGILRDR SFARISDEDW DIIHRVHLRG SFQVTRAAWE bmy_14950T0/1-562 LDAFGRIDVV INNAGILRDR SFGRMSDEDW DIIQRVHLRG SFLVTRAAWD ENSTTRP00000015653/1-709 LEAFGRIDVV INNAGILRDR SFGRISDEDW DIIQRVHLRG SFLVTRAAWD ENSBTAP00000009173/1-736 LDAFGRIDIV INNAGILRDR SFSRISDEDW DKIQRVHLRG SFLVTRAAWD 201 250 ENSP00000420914/1-761 HMKKQKYGRI IMTSSASGIY GNFGQANYSA AKLGLLGLAN SLAIEGRKSN bmy_14950T0/1-562 HMKKQKFGRI IMTSSASGIF GNFGQANYCA AKLGLLGLSN CLAVEGEKSN ENSTTRP00000015653/1-709 HMKKQKFGRI IMTSSASGIY GNFGQANYCA AKLGLLGLSN CLAVEGEKSN ENSBTAP00000009173/1-736 HMKKQKFGRI IMTSSASGIY GNFGQANYCA AKLGLLGLSN CLAVEGKKNN 251 300 ENSP00000420914/1-761 IHCNTIAPNA GSRMTQTVMP EDLVEALKPE YVAPLVLWLC HESCEENGGL bmy_14950T0/1-562 IHCNTIAPTA GSRLTQNILP DDLLEALKPD YVAPLVLWLC HESCEENGGL ENSTTRP00000015653/1-709 IHCNTIAPTA GSRLTQNILP DDLLEALKPD YVAPLVLWLC HESCEENGGL ENSBTAP00000009173/1-736 IHCNTIAPTA GSRMTQSILP EDLVEALKPD YVAPLVLWLC HESCEENGGL 301 350 ENSP00000420914/1-761 FE-------- --------VG AGWI------ ---------- ---------- bmy_14950T0/1-562 FEYHCHFNYS GSMKADCPVN IRWSRMDWKI SAYSIFVLSY SELAVSSDST ENSTTRP00000015653/1-709 FE-------- --------VG AGWI------ ---------- ---------- ENSBTAP00000009173/1-736 FE-------- --------VG AGWI------ ---------- ---------- 351 400 ENSP00000420914/1-761 ---------- ---------- GKLRWERTLG AIVRQKNHPM TPEAVKANWK bmy_14950T0/1-562 VYLYIDVCLP MSPAPHMLVQ QSIRWERTLG AIVRQRTQPM TPEAVKANWT ENSTTRP00000015653/1-709 ---------- ---------- GKLRWERTLG AIVRQRTQPM TPEAVKANWT ENSBTAP00000009173/1-736 ---------- ---------- GKLRWERSLG ALVRQRTQPM TPEAVKANWT 401 450 ENSP00000420914/1-761 KICDFENASK PQSIQESTGS IIEVLSKIDS EGGVSANHTS RATSTATSGF bmy_14950T0/1-562 KICDFDNATK PQRIQE---- ---------- --------HN MIVMSLVVAF ENSTTRP00000015653/1-709 KICDFDNATR PQRIQE---- ---------- ---------- ---IAYIFGF ENSBTAP00000009173/1-736 KICDFDNATK PKSIQESIGS IVEALNKINS GGEVSANPTS RATSATTSEF 451 500 ENSP00000420914/1-761 -AGAIGQKLP PFSYAYTELE AIMYALGVGA SIKDPKDLKF IYEGSSDFSC bmy_14950T0/1-562 SAGAIGHKLP PFSSSYTELD TIMYALGVGA SIKEPKDLKF IYEGSSDFSC ENSTTRP00000015653/1-709 -AGAIGHKFP PFSSSYTELD TIMYALGVGA SIKEPKDLRF IYEGSSDFSC ENSBTAP00000009173/1-736 -ARAIGHKFP PLYSSYAELD TIMYALGVGA SIKEPKDMKF IYEGSSDFSC 501 550 ENSP00000420914/1-761 LPTFGVIIGQ KSMMGGGLAE IPGLSINFAK VLHGEQYLEL YKPLPRAGKL bmy_14950T0/1-562 LPTFGVILAQ KSIMGGGLAE IPGLSVNLAK VLHGEQYLEL YKPLPRA--- ENSTTRP00000015653/1-709 LPTFGVILAQ KSIMGGGLAE IPGLSVNLAK VLHGEQYLEL YKPLPRAGKV ENSBTAP00000009173/1-736 LPTFGVILAQ KSIMNGGLAE IPGLSINLAK ILHGEQYLEL HKPIPRAGKL 551 600 ENSP00000420914/1-761 KCEAVVADVL DKGSGVVIIM DVYSYSEKEL ICHNQFSLFL VGSGGFGGKR bmy_14950T0/1-562 ---------- ---------- -VYSYSEEEL ICYNQFSIFV VGSGGFGGKR ENSTTRP00000015653/1-709 KCEAVVADVL DKGSGLIILM DVYSYSGEEL ICYNQFSIFV VGSGGFGGKR ENSBTAP00000009173/1-736 RCEAIVADIL DKGSGLVILV DVYTYSGEEL ICYNQFSIFV VGSGGSGGKR 601 650 ENSP00000420914/1-761 TSDKVKVAVA IPNRPPDAVL TDTTSLNQAA LYRLSGDWNP LHIDPNFASL bmy_14950T0/1-562 TSDKAKVAVA IPNRPPDAVL TDTTSLNQVS KENMNRTF-- ---------- ENSTTRP00000015653/1-709 MSDKAKXXXX XXXXXXXXXX XXXXXXXXAA LYRLSGDWNP LHIDPDFANL ENSBTAP00000009173/1-736 TSDKAKAAVA IPNRPPDAVL TDTTSLNQAA LYRLSGDWNP LHIDPNFASL 651 700 ENSP00000420914/1-761 AGFDKPILHG LCTFGFSARR VLQQFADNDV SRFKAIKARF AKPVYPGQTL bmy_14950T0/1-562 ---------- -C-------- ---------- ---------- ---------- ENSTTRP00000015653/1-709 AGFDKPILHG LCTFGFSARH VLQQFADNDV SRFKAIKVRF AKPVYPGQTL ENSBTAP00000009173/1-736 AGFDKPILHG LCTFGFSARH VLQQFADNDV SRFKAIKVRF AKPVYPGQTL 701 750 ENSP00000420914/1-761 QTEMWKEGNR IHFQTKVQET GDIVISNAYV DLAPTSGTSA KTPSEGGKLQ bmy_14950T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015653/1-709 QTEMWKEGSR IXXXXXVQGT GDIVISNAYV DLVPTADVLA KTPSEGRELQ ENSBTAP00000009173/1-736 QTEMWKEGNR IHFQTKVQET GGIVISNAYV DLVPASAISA KTPSEGAGLQ 751 800 ENSP00000420914/1-761 STFVFEEIGR RLKDIGPEVV KKVNAVFEWH ITKGGNIGAK WTIDLKSGSG bmy_14950T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015653/1-709 STLVFEEIGR RLQHMGGEVV KKVNAVFEWH ITKGENTAAK WTIDLKNGSG ENSBTAP00000009173/1-736 STLVFEEIGR RLQGIGEEVV KKVRAVFEWH ITKGENTAAK WTIDLKTGSG 801 850 ENSP00000420914/1-761 KVYQGPAKGA ADTTIILSDE DFMEVVLGKL DPQKAFFSGR LKARGNIMLS bmy_14950T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015653/1-709 KVYQGPAKDS ADVTITLSDE DFMKVVLGKL DPQKAFFSGR LKARGNIMLS ENSBTAP00000009173/1-736 KVYQGPAKGS ADVTITLSDE DFMEVVLGKL DPQKAVFSGR LKARGNILLS 851 900 ENSP00000420914/1-761 QKLQMILKDY AKL bmy_14950T0/1-562 ---------- --- ENSTTRP00000015653/1-709 QKLQMILKEY AKL ENSBTAP00000009173/1-736 QKLQMILKDY AKL