KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:37:25 2014 Check: 00 .. Name: ENSBTAP00000009178/1-542 Len: 631 Check: 8219 Weight: 1.00 Name: ENSTTRP00000004065/1-268 Len: 631 Check: 3030 Weight: 1.00 Name: bmy_15961T0/1-305 Len: 631 Check: 2615 Weight: 1.00 Name: BACU000001/1-629 Len: 631 Check: 5894 Weight: 1.00 // 1 50 ENSBTAP00000009178/1-542 MGLPPLLRPA PGVRKALAHS S--------- RSQSFGDCSL PPDVPNAQAA ENSTTRP00000004065/1-268 --MSPARRSA PVVLRLLGGL APPLLLLLLR PPATSGDCSL PPDVPNAQPA bmy_15961T0/1-305 --MSPARRSA PAVLRLLGGL APPLLLLLLR PPAASGDCGL PPDVPNAQPA BACU000001/1-629 --MSPARRSA SAVLHLLGGL APPLLLLLLC PPPASGDCGL PPDVPNAQPA 51 100 ENSBTAP00000009178/1-542 LGGLTSFPEK RTVTYKCNRG FVKVPGKADS VICENNKWSE LAVFCNRSCD ENSTTRP00000004065/1-268 LGALTSFPKQ STVTYKCNEG FVKVPGKGDS VVCLDNKWSE LAE-CNRSCD bmy_15961T0/1-305 LGALTSFPKQ STVTYKCNEG FVKVPGKADS VVCLNNKWSE VAEFCNRSCD BACU000001/1-629 LGALTSFPKQ STVTYKCNEG FVKVPGKADS VVCLNNKWSE VAEFCNRSCD 101 150 ENSBTAP00000009178/1-542 VPTRLLFASL KKSYSQQNYF PEGTTVEYEC RQGYIRDPSL SGNITCLQNF ENSTTRP00000004065/1-268 VPTRLLFASL KKSYTKQNYF PEGSTVEYDC RLGYMRDHSL SGKVTCLQNF bmy_15961T0/1-305 VPTRLLFASL KKSYTKQNYF PEGSTVEYDC RLGYIRDHSL SGKLTCLQNF BACU000001/1-629 VPTRLLFASL KKSYTKQNYF PEGSTVEYDC RLGYIRDHSL SGKLTCLQNF 151 200 ENSBTAP00000009178/1-542 VWSKPDRFCK KKSCPKPREI ENGHVNITTD ILLGATIYFS CNAGYKLVGA ENSTTRP00000004065/1-268 TWSKPDEFCK KKSCANPREI KNGYVSITHD LLFGSPIHFS CNTGXXXXXX bmy_15961T0/1-305 TWSKPDEFCK KKSCANPREI KNGHVNITHD LLFGSSIHFS CNTGYKLVGA BACU000001/1-629 TWSKPDEFCK KKSCANPREI KNGHVNITHD LLFGSSIRFS CNTGYKLVGA 201 250 ENSBTAP00000009178/1-542 TFSFCAPVGN TVGWTNEFPE CQEILCPEPP KVDHGMIQEK QNSYAYGQSV ENSTTRP00000004065/1-268 XXXXXXXXXX XXXXXXXXXX XXXI------ ---------- ---------- bmy_15961T0/1-305 TSSYCSLAGS TVEWSDPFPE CQE------- ---------- ---------- BACU000001/1-629 TSSYCSLAGS TVEWSDPFPE CQEILCPEPP EVDHGMIEEK QNSYAYRHSV 251 300 ENSBTAP00000009178/1-542 TYKCMEGFTL HGESSIYCTV KDDQGEWSGP LPQCRET--- -DVTPTVPKS ENSTTRP00000004065/1-268 ---------- ---------- ---------- ------TFQI DKVTPAVQKP bmy_15961T0/1-305 ---------- ---------- ---------- ------TFQI YKVTPAVQKP BACU000001/1-629 TYKCMKGFTL HGESSIYCTV KDGQGEWSGP PPECKETFQI YKVTPAVQKP 301 350 ENSBTAP00000009178/1-542 TEVNVPGTKV LSTPQKPTTV NVSATETPPT P--------- ---------- ENSTTRP00000004065/1-268 TRVHVP---- ---------- ---------- ---------- ---------- bmy_15961T0/1-305 TRVHVPATKV PPTPQKPSTV NVS------- ---------- ---------- BACU000001/1-629 TRVHVPATKV PPTPQKSSTV NVSGTEAPPT PQKPTTVNVS ATEAPPTPQK 351 400 ENSBTAP00000009178/1-542 ---------- -----QKPTT VNVSATETPP TPQKPTTVNV PATETPPTPE ENSTTRP00000004065/1-268 ---------- ---------- ---------- ---------- ---------- bmy_15961T0/1-305 ---------- ---------- ---------- ---------- ---------- BACU000001/1-629 LIKINSSATK SPIVSQKPTT VNVSATEAPP TPQKPTTINI SATEAPPTPQ 401 450 ENSBTAP00000009178/1-542 KFITINSSAT KPPLVSQTYT TVNVPATKVP SPPQKPSTAN GSATTAWNSP ENSTTRP00000004065/1-268 ---------- ---------- ---------- ---------- ---------- bmy_15961T0/1-305 ---------- ---------- ---------- ---------- ---------- BACU000001/1-629 KLIKINSSAT KSPLVSQKPT TVNVPATEVS SAPQKPSTAN DSATTAPNSP 451 500 ENSBTAP00000009178/1-542 ISNTVSTAAQ NLLMANDSAT --TPTTQRFT PAKSLLIQNL KTTPKSTSVH ENSTTRP00000004065/1-268 ---------- ---------- ---------- ---------- ---------- bmy_15961T0/1-305 ---VASIIAS GILL------ ---------- ---------- ---------- BACU000001/1-629 ISNTVSTAAQ NPIMANASAS QATPTTQRFT MAKSSLTQNL RATQKSTAVH 501 550 ENSBTAP00000009178/1-542 T--TKGLHIT QRLTSARVTA AKSTAVPRTT PRFHATGTPQ GRGSAPSVAS ENSTTRP00000004065/1-268 ---------- ---------- TRSPAVHRAT TRFHATSTPK GGGSSTS--- bmy_15961T0/1-305 ---KYSVYGC QRENRTYMYD IDSFAYDASN ---HWLTEPK KS-------- BACU000001/1-629 TPVTKSLHAT QRLTSAHVTA TRSPAVPRAT TRFHAASPPK GGGSSPSVAS 551 600 ENSBTAP00000009178/1-542 TVASGKCDSL RVHRICHRIR IYN--SWKRI LFFYCL---- -CCCCSVTKS ENSTTRP00000004065/1-268 ---------- ---------- ---------- ---------- ---------- bmy_15961T0/1-305 ---------- ---------- ---------- ---------- ---------- BACU000001/1-629 IIASGKCGSL AVNRTCPRFR TCNLCSWKII LSFKCLRNTI KIQCLWVPKR 601 650 ENSBTAP00000009178/1-542 ---------- ---------- ---------- - ENSTTRP00000004065/1-268 ---------- ---------- ---------- - bmy_15961T0/1-305 ---------- ---------- ---------- - BACU000001/1-629 KQVNAFYRCV LYYHRVLGMF LSIPHHVLVP R