KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:26 2014 Check: 00 .. Name: ENSP00000350547/1-770 Len: 773 Check: 6839 Weight: 1.00 Name: ENSBTAP00000009186/1-771 Len: 773 Check: 5114 Weight: 1.00 Name: ENSTTRP00000012110/1-773 Len: 773 Check: 2064 Weight: 1.00 Name: bmy_12436T0/1-773 Len: 773 Check: 3987 Weight: 1.00 Name: BACU010584/1-718 Len: 773 Check: 103 Weight: 1.00 // 1 50 ENSP00000350547/1-770 MPASAARPRP GPGQPTASPF P---LLLLAV LSGPVSGRVP RSVPRTSLPI ENSBTAP00000009186/1-771 MPGSVARLLP RLRPSGTSPL F--LLLLLAL LRGPVCGRVP HSVPRTSLPI ENSTTRP00000012110/1-773 MPASVARPRP RLGPSPASPL PLLLLLLLEV LSGLVCGRVP PSVPRISLPI bmy_12436T0/1-773 MPTSVARPRP CPGPSPASPL PLLLLLLLEV LSGPVCGRVS PSVPRISLPI BACU010584/1-718 MPSSVARPCP RPGPSPASPF P--LLLLLEV LSGPVCGRIS PSVPRISLPI 51 100 ENSP00000350547/1-770 SEADSCLTRF AVPHTYNYSV LLVDPASHTL YVGARDTIFA LSLPFSGERP ENSBTAP00000009186/1-771 SEADSYLTRF TIPQTYNYSV LLVDPASHML YVGARDTIFA TSLPFSGEKP ENSTTRP00000012110/1-773 SEADSYLTRF TIPQTYNYSV LLVDPASHML YVGARDTIFA LSLPFSGERP bmy_12436T0/1-773 SEADSYLTRF TIPQTYNYSI LLVDPASHML YVGARDTIFA LSLPFSGERP BACU010584/1-718 SEADSYLTRF TIPQTYNYSV LLVDPASHML YVGARDTIFA LSLPFSGERP 101 150 ENSP00000350547/1-770 RRIDWMVPEA HRQNCRKKGK KEDECHNFVQ ILAIANASHL LTCGTFAFDP ENSBTAP00000009186/1-771 RRIDWMVPEA HRQNCRKKGK KEDECHNFVQ ILAIANASHL LTCGTFAFDP ENSTTRP00000012110/1-773 RRIDWMVPEA HRQNCRKKGK KEEECHNFVQ ILAIANASHL LICGTFAFDP bmy_12436T0/1-773 RRIDWMVPEA HRQNCRKKGK KEEECHNFVQ ILAIANASHL LICGTFAFDP BACU010584/1-718 RRIDWMVPEA HRQNCRKKGK KEEECHNFVQ ILAIANASHL LICGTFAFDP 151 200 ENSP00000350547/1-770 KCGVIDVSRF QQVERLESGR GKCPFEPAQR SAAVMAGGVL YAATVKNYLG ENSBTAP00000009186/1-771 KCGVIDVSSF QQVERLESGR GKCPFEPAQR SAAVMAGGAL YAATVKNYLG ENSTTRP00000012110/1-773 KCGVIDVSSF QQVERPESGR GKCPFEPAQR SAAVMAGGIL YAATVKNYLG bmy_12436T0/1-773 KCGVIDVSSF QQVERPESGR GKCPFEPAQR SAAVMAGGVL YVATVKNYLG BACU010584/1-718 KCGVIDVSSF QQVERPESGR GKCPFEPAQR SAAVIAGGVL YVATVKNYLG 201 250 ENSP00000350547/1-770 TEPIITRAVG RAEDWIRTDT LPSWLNAPAF VAAVALSPAE WGDEDGDDEI ENSBTAP00000009186/1-771 TEPIISRAVG RAEDWVRTET LPSWLNAPAF VAAMALSPAE WGDEDGDDEI ENSTTRP00000012110/1-773 TEPIISRAVG RAEDWIRTEI LPSWLNAPAF VAAVALSPAE WGDEAGDDEI bmy_12436T0/1-773 TEPIISRAVG RAEDWIRTET LPSWLNAPAF VAAVALSPAE WGDEDGDDEI BACU010584/1-718 TEPIISRAVG RAEDWIRTET LPSWLNAPAF VAAVALSPAE WGDEDGDDEI 251 300 ENSP00000350547/1-770 YFFFTETSRA FDSYERIKVP RVARVCAGDL GGRKTLQQRW TTFLKADLLC ENSBTAP00000009186/1-771 YFFFTEIARA FDSYERIKVP RVARVCAGDL GGRKTLQQRW TTFLKADLLC ENSTTRP00000012110/1-773 YFFFTEISRA FDSYEHVKVP RVARVCAGDL GGRKTLQQRW TTFLKADLLC bmy_12436T0/1-773 YFFFTEISRA FDSYERVKVP RVARVCAGDL GGRKTLQQRW TTFLKADLLC BACU010584/1-718 YFFFTEISRA FDSYERVKVP RVARVCAGDL GGRKTLQQRW TTFLKADLLC 301 350 ENSP00000350547/1-770 PGPEHGRASS VLQDVAVLRP ELGAGTPIFY GIFSSQWEGA TISAVCAFRP ENSBTAP00000009186/1-771 PGPEHGRASS VLQDVAILRP EGGAGTPVFY GIFSSQWEGA AISAVCSFRP ENSTTRP00000012110/1-773 PGPEHGRASS VLQDMVILRP EHGAGTPIFY GIFSSQWEGA AISAVCSFRP bmy_12436T0/1-773 PGPEHGRASS VLQDMVILRP EHGSGTPIFY GIFSSQWEGA AISAVCSFLP BACU010584/1-718 PGPEHGRASS VLQDMVILRP EHGAGTPIFY GIFSSQWEGA AISAVCSFLP 351 400 ENSP00000350547/1-770 QDIRTVLNGP FRELKHDCNR GLPVVDNDVP QPRPGECITN NMKLRHFGSS ENSBTAP00000009186/1-771 QDIRTVLNGP FRELKHDCNR GLPVMDNDVP QPRPGECITN NMKLQQFGSS ENSTTRP00000012110/1-773 QDIRTVLNGP FRELKHDCNR GLPVMDNDVP QPRPGECITN NMKLQQFGSS bmy_12436T0/1-773 QDIRTVLNGP FRELKHDCNR GLPVMDNDVP QPRPGECITN NMKLQQFGSS BACU010584/1-718 QDIRTVLNGP FRELKHDCNR GLPVMDNDVP QPRPGECITN NMKLQQFGSS 401 450 ENSP00000350547/1-770 LSLPDRVLTF IRDHPLMDRP VFPADGHPLL VTTDTAYLRV VAHRVTSLSG ENSBTAP00000009186/1-771 LFLPDRVLTF IRDHPLMDRP VFPADGRPLL VTTDTAYLRV VAHRVPSLSG ENSTTRP00000012110/1-773 LFLPDRVLTF IRDHPLMDKP VFPADGHPLL VTTDTTYLRV VAHRVPSLSG bmy_12436T0/1-773 LFLPDRVLTF IRDHPLMDRP VFPADGHPLL VTTDTAYLRV VAHRVPSLSG BACU010584/1-718 LFLPDRVLTF IRDHPLMDRP VFPADGHPLL VTTDTAYLRV VAHK------ 451 500 ENSP00000350547/1-770 KEYDVLYLGT EDGHLHRAVR IGAQLSVLED LALFPEPQPV ENMKLYHSWL ENSBTAP00000009186/1-771 KEYDVLYLGT EDGHLHRAVQ IGAQLSVLED LALFPEPQPV ENMKLYQNWL ENSTTRP00000012110/1-773 KEYDVLYLGT EDGHLHRAVQ IGAQLSVLED LALFPEPQPV ENMKLYQSWL bmy_12436T0/1-773 KEYDVLYLGT EDGHLHRAVQ IGAQLSVLED LALFPEPQPV ENMKLYQSWL BACU010584/1-718 ---------- ---------- ---------- ---------- -------SWL 501 550 ENSP00000350547/1-770 LVGSRTEVTQ VNTTNCGRLQ SCSECILAQD PVCAWSFRLD ECVAHAGEHR ENSBTAP00000009186/1-771 LVGSRTEVTQ VNTANCGRLQ SCSECILARD PACAWSVRLA ACVAHPGEHG ENSTTRP00000012110/1-773 LVGSRTEVTQ VNTTNCGRLQ SCSECILARD PVCAWSVRLA ACVAHTGEHE bmy_12436T0/1-773 LVGSRTEVTQ VNTTNCGRLQ SCSECVLARD PVCAWSVRLA ACVAHTGEHE BACU010584/1-718 LVGSRTEVTQ VNTTNCGRLQ SCSECVLARD PVCAWSVRLA ACVAHTGEHE 551 600 ENSP00000350547/1-770 GLVQDIESAD VSSLCPKEPG ERPVVFEVPV ATAAHVVLPC SPSSAWASCV ENSBTAP00000009186/1-771 GLVQDIESAD VSSLCPEEPG EHPVVFEVPV AAAAHVVLPC SPSSAWASCV ENSTTRP00000012110/1-773 GLVQDIESAD VSSLCPQEPG EHPVVFEVPV ATAAHVVLPC SPSSAWASCV bmy_12436T0/1-773 GLVQDIESAD VSSLCPKEPG EHPVVFEVPV ATAAHVVLPC SPSSAWASCV BACU010584/1-718 GLVQDIESAD VSSLCPKEPG EHPVVFEVPV ATAAHVVLPC SPSSAWASCV 601 650 ENSP00000350547/1-770 WHQPSGVTAL TPRRDGLEVV VTPGAMGAYA CECQEGGAAH VVAAYSLVWG ENSBTAP00000009186/1-771 WRQPSGVTAL TRRQEGLEVV ISPGAMGAYA CECQEGGAAR VVAAYSLVWG ENSTTRP00000012110/1-773 WHQPSGVTAL TPRRDGLEVV ISPGAMGAYA CECQEGGAAR VVAAYSLVWG bmy_12436T0/1-773 WHQPSGVTAL TPRRDGLEVV ISPGAMGAYA CECQEGGAAR VVAAYSLVWG BACU010584/1-718 WHQPSGVTAL TPRRDGLEVV ISPGAMGAYA CECQEGGAAR VVAAYSLVWG 651 700 ENSP00000350547/1-770 SQRDAPSRAH TVGAGLAGFF LGILAASLTL ILIGRRQQRR RQRELLARDK ENSBTAP00000009186/1-771 TPRGPLSQAH TIGAGLAGFF LGVLAASLTL LLIGRHQQRQ RQRELLARDK ENSTTRP00000012110/1-773 SQRGAPSRAH LVGAGLAGFF LGVFAASLTL LLIGRRQQRQ RQRELLARDK bmy_12436T0/1-773 SQRGAPSRAH IVGAGLAGFF LGVFAASLTL LLIGRRQQRQ RQRELLARDK BACU010584/1-718 SQRGAPSRAH VVGAGLAGFF LGVFAASLTL LLIGRRQQRQ RQRELLARDK 701 750 ENSP00000350547/1-770 VGLDLGAPPS GTTSYSQDPP SPSPEDERLP LALAKRGSGF GGFSPPFLLD ENSBTAP00000009186/1-771 VGLDLGVPPS GTTSYSQDPP SPSPEDERLP LALAKRGSGF GGFPPPFLLD ENSTTRP00000012110/1-773 VGLDLGVLPS GTTSYSQDPP SPSPEDERLP LALAKRGSGF GGFPPPFLLD bmy_12436T0/1-773 VGLDLGVLPS GTTSYSQDPP SPSPEDERLP LALAKRSSGF GGFPPPFLLD BACU010584/1-718 VGLDLGVLPS GTTSYSQDPP SPSPEDERLP LALAKRGSGF GGFPPPFLLD 751 800 ENSP00000350547/1-770 PCPSPAHIRL TGAPLATCDE TSI ENSBTAP00000009186/1-771 PCPSPAHIRL TGAPLATCDE TSI ENSTTRP00000012110/1-773 PCPSPPHIRL TGAPLATCDE TSI bmy_12436T0/1-773 PCPSPAHIRL TGAPLATCDE TSI BACU010584/1-718 PCPSPAHIRL TGAPLATCDE TSI