KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:37:27 2014 Check: 00 .. Name: ENSTTRP00000010650/1-1170 Len: 1224 Check: 7380 Weight: 1.00 Name: ENSP00000278836/1-1151 Len: 1224 Check: 3578 Weight: 1.00 Name: bmy_17464T0/1-1132 Len: 1224 Check: 8628 Weight: 1.00 Name: ENSBTAP00000009187/1-1138 Len: 1224 Check: 5760 Weight: 1.00 // 1 50 ENSTTRP00000010650/1-1170 SRDCRAGRAG DAAPPGRAVA GPGECTRGRP DMEVVDETEA LQRFFEGHDI ENSP00000278836/1-1151 ---------- ---------- ---------- -MEVVDETEA LQRFFEGHDI bmy_17464T0/1-1132 ---------- ---------- ---------- ---------- -------HDI ENSBTAP00000009187/1-1138 ---------- ---------- ---------- ---------- ------GHDI 51 100 ENSTTRP00000010650/1-1170 NGALEPSNID TSILEEYISK EDASDLCFPD ISAPASAASY PHGQPAIPGS ENSP00000278836/1-1151 NGALEPSNID TSILEEYISK EDASDLCFPD ISAPASSASY SHGQPAMPGS bmy_17464T0/1-1132 NGALEPSNID TSILEEYISK EDASDLCFPD ISAPASVASY PHGQPAIPGS ENSBTAP00000009187/1-1138 NGALEPSNID TSILEEYISK EDASDLCFPD ISAPASAASY PHGQPAIPGS 101 150 ENSTTRP00000010650/1-1170 SGVHHLSPPG GGPSPGRHGP LPPPNYSAPL NCNNNNGMGA APKPFLGGSG ENSP00000278836/1-1151 SGVHHLSPPG GGPSPGRHGP LPPPGYGTPL NCNNNNGMGA APKPFPGGTG bmy_17464T0/1-1132 SGVHHLSPPG GGPSPGRHGP LPPPNYSAPL NCNNNNGMGA APKPFLGGSG ENSBTAP00000009187/1-1138 SGVHHLSPPG GGPSPGRHGA LPPPSYSAPL NCNNNNGVGV APKPFLGGSG 151 200 ENSTTRP00000010650/1-1170 PPIKAEPKAP YAPGTLPDSP PDSGSEAYSP QQVNDPHLLR TLTPESLCHV ENSP00000278836/1-1151 PPIKAEPKAP YAPGTLPDSP PDSGSEAYSP QQVNEPHLLR TITPETLCHV bmy_17464T0/1-1132 PPIKAEPKAP YAPGTLPDSP PDSGSEAYSP QQVNDPHLLR TLTPESLCHV ENSBTAP00000009187/1-1138 PPIKAEPKAP YAPGTLPDSP PDSGSEAYSP QQVNDPHLLR TITPETLCHV 201 250 ENSTTRP00000010650/1-1170 GVPSRPEHPP PP-------- -PPPPPPHYP VLQRDLYMKA EPPMPPYAAV ENSP00000278836/1-1151 GVPSRLEHPP PPPAHLPGPP PPPPPPPHYP VLQRDLYMKA EPPIPHYAAM bmy_17464T0/1-1132 GVPSRPEHP- ---------- -PPPPPPHYP VLQRDLYMKA EPPMPPYAAM ENSBTAP00000009187/1-1138 GVPSRLEHPP PPPAHLPGPP PPPPPPPHYP VLQRDLYMKA EPPMPPYAAM 251 300 ENSTTRP00000010650/1-1170 GQGLVPTDLH HTQQSQMLHQ LLQQHGAGAE LPTHPSKKRK HSESPPNTLN ENSP00000278836/1-1151 GQGLVPTDLH HTQQSQMLHQ LLQQH--GAE LPTHPSKKRK HSESPPSTLN bmy_17464T0/1-1132 GPGLVPTDLH RTQQSQLLHQ LLPQHGAGAE LPTHPSKKRK HSESPPNTLN ENSBTAP00000009187/1-1138 GQGLVPTDLH HGQQSQMLHQ LLQQH--GAE LPPHPSKKRK HSESPPNTLN 301 350 ENSTTRP00000010650/1-1170 AQMLNGMIKQ EPGTVTSLPP HPARAPSPPW PPQGPLSPGP GSLPLSIARV ENSP00000278836/1-1151 AQMLNGMIKQ EPGTVTALPL HPTRAPSPPW PPQGPLSPGP GSLPLSIARV bmy_17464T0/1-1132 AQMLNGMIKQ EPGTVTSLPP HPARAPSPPW PPQGPLSPGP GSLPLSIARV ENSBTAP00000009187/1-1138 AQMLNGMIKQ EPGTVTALPP HPARAPSPPW PPQGPLSPGP NSLPLSIARV 351 400 ENSTTRP00000010650/1-1170 QTPPWHPPGA PSPGLLQDND SLSGSYLDPN YQSIKWQPHQ QNKWATLYDA ENSP00000278836/1-1151 QTPPWHPPGA PSPGLLQDSD SLSGSYLDPN YQSIKWQPHQ QNKWATLYDA bmy_17464T0/1-1132 QTPPWHPPGA PSPGLLQDND SLSGSYLDPN YQSIKWQPHQ QNKWATLCDA ENSBTAP00000009187/1-1138 QTPPWHPPGA PSPGLLQDSD SLSGSYLDPN YQSIKWQPHQ QNKWATLYDA 401 450 ENSTTRP00000010650/1-1170 NYKELPMLTY RVDADKGFNF SVGDDAFVCQ KKNHFQVTVY IGLLGEPKYV ENSP00000278836/1-1151 NYKELPMLTY RVDADKGFNF SVGDDAFVCQ KKNHFQVTVY IGMLGEPKYV bmy_17464T0/1-1132 NYKELPMLTY RVDADKGFNF SVGDDAFVCQ KKNHFQVTVY IGMLGEPKYV ENSBTAP00000009187/1-1138 NYKELPMLTY RVDADKGFNF SVGDDAFVCQ KKNHFQVTAY IGMLGEPKYV 451 500 ENSTTRP00000010650/1-1170 KTPEGLQPLD CFHLKLHGVK XXXXXXXXXX XXXXXXXXXX XXXXXXVSLP ENSP00000278836/1-1151 KTPEGLKPLD CFYLKLHGVK LEALNQSINI EQSQSDRSKR PFNPVTVNLP bmy_17464T0/1-1132 KTPEGLKPLD CFYLKLHG-- LEALNQSINI EQSQSDRSKR PFNPVTVSLP ENSBTAP00000009187/1-1138 KTPEGLKPLD CFYLKLHGVK LEALNQSINI EQSQSDRSKR PFNPVSVNLP 501 550 ENSTTRP00000010650/1-1170 PEQVTKVTVG RLHFSETTAN NMRKKGKPNP DQRYFMLVVA LQAHAQNQNY ENSP00000278836/1-1151 PEQVTKVTVG RLHFSETTAN NMRKKGKPNP DQRYFMLVVA LQAHAQNQNY bmy_17464T0/1-1132 PEQVTKVTVG RLHFSETTAN NMRKKGKPNP DQRYFMLVVA LQAHAQNQNY ENSBTAP00000009187/1-1138 PEQVTKVTVG RLHFSETTAN NMRKKGKPNP DQRYFMLVVA LQAHAQNQNY 551 600 ENSTTRP00000010650/1-1170 TLAAQISERI IVRASNPGQF ESDSDVLWQR AQVPDTVFHH GRVGINTDRP ENSP00000278836/1-1151 TLAAQISERI IVRASNPGQF ESDSDVLWQR AQVPDTVFHH GRVGINTDRP bmy_17464T0/1-1132 TLAAQISERI I--ASNPGQF ESDSDVLWQR AQVPDTVFHH GRVGINTDRP ENSBTAP00000009187/1-1138 TLAAQISERI IVRASNPGQF ESDSEVLWQR AQVPDTVFHH GRVGINTDRP 601 650 ENSTTRP00000010650/1-1170 DEALVVHGNV KVMGSLMHPS DLRAKEHLQE VDTTEQLKRI SRMRLVHYRY ENSP00000278836/1-1151 DEALVVHGNV KVMGSLMHPS DLRAKEHVQE VDTTEQLKRI SRMRLVHYRY bmy_17464T0/1-1132 DEALVVHGNV KVMGSLMHPS DLRAKEHLQE VDTTEQLKRI SRMRLVHYRY ENSBTAP00000009187/1-1138 DEALVVHGNV KVMGSLMHPS DLRAKEHVQE VDTTEQLKRI SRMRLVHYRY 651 700 ENSTTRP00000010650/1-1170 KPEFAATAGI EAAAPETGVI AQEVKEILPE AVKDTGDVVF ANGKTIENFL ENSP00000278836/1-1151 KPEFAASAGI EATAPETGVI AQEVKEILPE AVKDTGDMVF ANGKTIENFL bmy_17464T0/1-1132 KPEFAATAGI EAAAPETGVI AQEVKEILPE AVKDTGDVVF ANGKTIENFL ENSBTAP00000009187/1-1138 KPEFAATAGI EAAAPETGVI AQEVKEILPE AVKDTGDVVF ANGKTIENFL 701 750 ENSTTRP00000010650/1-1170 VVNKERIFME NVGAVKELCK LTDNLETRID ELERWSHKLA KLRRLDSLKS ENSP00000278836/1-1151 VVNKERIFME NVGAVKELCK LTDNLETRID ELERWSHKLA KLRRLDSLKS bmy_17464T0/1-1132 VVNKERIFME NVGAVKELCK LTDNLETRID ELERWSHKLA KLRRLDSLKS ENSBTAP00000009187/1-1138 VVNKERIFME NVGAVKELCK LTDNLETRID ELERWSHKLA KLRRLDSLKS 751 800 ENSTTRP00000010650/1-1170 TGSSGAFSHA GSQFSRAGSV PHKKRPPKVA SKSSSVVPDQ ACISQRFLQG ENSP00000278836/1-1151 TGSSGAFSHA GSQFSRAGSV PHKKRPPKVA SKSSSVVPDQ ACISQRFLQG bmy_17464T0/1-1132 TGSSGAFSHA GSQFSRAGSV PHKKRPPKVA SKSSSVVPDQ ACISQRFLQG ENSBTAP00000009187/1-1138 TGSSGAFSHA GSQFSRAGSV PHKKRPPKVA SKSSSVVPDQ ACISQRFLQG 801 850 ENSTTRP00000010650/1-1170 TIIALVVVMA FSVVSMSTLY VLSLRTEEDL V-TDGSLPVC TSCLLALLRP ENSP00000278836/1-1151 TIIALVVVMA FSVVSMSTLY VLSLRTEEDL VDTDGSFAVS TSCLLALLRP bmy_17464T0/1-1132 TIIALVVVMA FSVVSMSTLY VLSLRTEEDL VETDG----- ---------- ENSBTAP00000009187/1-1138 TIVALVVVMA FSVVSMSTLY VLSLRTEEDL VESDGSFAVS TSCLLALLRP 851 900 ENSTTRP00000010650/1-1170 QHPGGSEAMC PWSSQSFGTT QLRQSPVTTG RPGSQPSLLL V--------- ENSP00000278836/1-1151 QPPGGSEALC PWSSQSFGTT QLRQSPLTTG LPGIQPSLLL V--------- bmy_17464T0/1-1132 ---------- --SSQSFGTT QLRQSPVTTG RPGTRPSLLL GACRGVGLEG ENSBTAP00000009187/1-1138 QHPGGSEAMC PWSSQSFGTT QLRQSPVTTG VLGPQPSLLL G--------- 901 950 ENSTTRP00000010650/1-1170 ---------- ---------- --------TT GLTSSAPAPA LRTLDLCSSR ENSP00000278836/1-1151 ---------- ---------- --------TT SLTSSAPGSA VRTLDMCSSH bmy_17464T0/1-1132 WGGERWLCSG SGGSAAPLRL IQPLASSVTT GPTSSAPAPA LRTLDLCSGR ENSBTAP00000009187/1-1138 ---------- ---------- --------TT GPTRSAPAPA LRTLDLCSTH 951 1000 ENSTTRP00000010650/1-1170 PCPVVCCSSP SPSPTP---- APSFNPGRGL SPSPGPSTNR SGPSQMALLP ENSP00000278836/1-1151 PCPVICCSSP TTNPTTGPSL GPSFNPGHVL SPSPSPSTNR SGPSQMALLP bmy_17464T0/1-1132 PCPVVCCSSP SPSPTTDPSL GPSLNPGHGL SPSPGPSTNR SGPSQMALLP ENSBTAP00000009187/1-1138 PCPVICCSSP SPTPSTDPSL GPSFNPGRGL SPSPSPTTNR SGPSQMALLP 1001 1050 ENSTTRP00000010650/1-1170 ATNIRAKSWG LSANGIGYFK HPKNSDPVAS PAVPFPGGQG KAKNSPSLGF ENSP00000278836/1-1151 VTNIRAKSWG LSVNGIGHSK HHKSLEPLAS PAVPFPGGQG KAKNSPSLGF bmy_17464T0/1-1132 VTNIRAKSWG LSANGIGYFK HPKNSDPVAS PAVPFPGGQG KAKNSPSLGL ENSBTAP00000009187/1-1138 VTNIRAKSWG LSANGIGYFK HPKSSNPVAS PVVPFPGGQG KAKNGPSLGL 1051 1100 ENSTTRP00000010650/1-1170 HVRGRRGAPQ LGLSSAQPTQ AWSQP-XXXX XXXXXX--XX XXXXXXXXXX ENSP00000278836/1-1151 HGRARRGALQ SSVGPAEPTW AQGQS-ASLL AEPVPS--LT SIQVLENSMS bmy_17464T0/1-1132 HVRGRRGAPQ LGLSPAQPTQ ARSQPVASLL ADPVPS--LT SIQVLENSMP ENSBTAP00000009187/1-1138 HGRGRRAVPE PGLSPAQPTQ AWGQP-DSLC AELVPSAILT SIQVLENSMP 1101 1150 ENSTTRP00000010650/1-1170 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXSS APVSVALCSL ENSP00000278836/1-1151 ITSQYCAPGD ACRPGNFTYH IPVSSGTPLH LSLTLQMNSS SPVSVVLCSL bmy_17464T0/1-1132 ITSQYCSSED ACRPGNFTYH IPISSSTPLH LRLTLQMNSS APVSVVLCSL ENSBTAP00000009187/1-1138 ITSQYCTSED ACRPGNVTYH IPVSSSTPLH LRLTLQMNSS SPVSVVLCSL 1151 1200 ENSTTRP00000010650/1-1170 MSKEEPCEEG GFPQSLHAHQ DTQGTSHQWP VTILSFRRFT YHFRVALLGQ ENSP00000278836/1-1151 RSKEEPCEEG SLPQSLHTHQ DTQGTSHRWP ITILSFREFT YHFRVALLGQ bmy_17464T0/1-1132 MSKEEPCEEG GFPQSLHAHQ DTQGTSHQWP VTIPSFRRFT YHFRVALLGQ ENSBTAP00000009187/1-1138 MSKEEPCEEG GFLQSLHAHQ DTQGTSHQWP VTILSFRRFT YHFRVALLGQ 1201 1250 ENSTTRP00000010650/1-1170 ANCSLEAPVW PAADYYFHFY RLCD ENSP00000278836/1-1151 ANCSSEALAQ PATDYHFHFY RLCD bmy_17464T0/1-1132 ANCSLEAPVW PAADYYFHFY RLCD ENSBTAP00000009187/1-1138 ANCSAEAPVQ PATDYYFHFY RLCD