KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:31 2014 Check: 00 .. Name: ENSP00000354721/1-701 Len: 865 Check: 90 Weight: 1.00 Name: ENSBTAP00000009210/1-706 Len: 865 Check: 3922 Weight: 1.00 Name: ENSTTRP00000000098/1-706 Len: 865 Check: 107 Weight: 1.00 Name: bmy_12246T0/1-865 Len: 865 Check: 3287 Weight: 1.00 Name: BACU018328/1-706 Len: 865 Check: 1799 Weight: 1.00 // 1 50 ENSP00000354721/1-701 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009210/1-706 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000098/1-706 ---------- ---------- ---------- ---------- ---------- bmy_12246T0/1-865 MDTSHPRCPP SRPLRARSRN SAARTGSGRR CCSTDLGSWH LQGSSCQQGR BACU018328/1-706 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000354721/1-701 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009210/1-706 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000098/1-706 ---------- ---------- ---------- ---------- ---------- bmy_12246T0/1-865 SAEAMEGRPE GTMVVWTAER RGLWRGRRAA ELVLATRVWV SVTPSDSDTS BACU018328/1-706 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000354721/1-701 ---------- ---------- ----MDESPE PLQQGRGPVP VRRQRPAPRG ENSBTAP00000009210/1-706 ---------- ---------- ----MEASPE YTEWGGQLVL VRRRPPPPPG ENSTTRP00000000098/1-706 ---------- ---------- ----MAASPE CTQQGRGLAL VRRRPPAPPG bmy_12246T0/1-865 RHPSNDTHFC PLCRFSRGAG WCPTMEVSPE CTQQGRGLVL VRRRPPAPQG BACU018328/1-706 ---------- ---------- ----MEVSPE CTQQGRGLVL VRRRPPAPPG 151 200 ENSP00000354721/1-701 LREMLKARLW CSCSCSVLCV RALVQDLLPA TRWLRQYRPR EYLAGDVMSG ENSBTAP00000009210/1-706 LGEVLKAGLR RSCACSLQGT WAQLQALFPA VHWLRQYRPR EALVGDVMSG ENSTTRP00000000098/1-706 LREALKARLW RSCSCSVQGA WALLQNLLPA TRWLRQYQPR EDLAGDVISG bmy_12246T0/1-865 LREALKARLR RSCACSVQGA WALLQDLLPA TRWLRQYQPR EDLAGDVISG BACU018328/1-706 LREALKARLR RSCACSVQGA WALLQDLLPA TRWLRQYQPR EDLAGDVISG 201 250 ENSP00000354721/1-701 LVIGIILVPQ AIAYSLLAGL QPIYSLYTSF FANLIYFLMG TSRHVSVGIF ENSBTAP00000009210/1-706 LVIGIILVPQ AIAYSLLAGL QPIYSLYTSF FANLIYFLMG TSRHVSVGIF ENSTTRP00000000098/1-706 LVIGIILVPQ AIAYSLLAGL QPIYSLYTSF FANLIYFLMG TSRHVSVGIF bmy_12246T0/1-865 LVIGIILVPQ AIAYSLLAGL QPIYSLYTSF FANLIYFLMG TSRHVSVGIF BACU018328/1-706 LVIGIILVPQ AIAYSLLAGL QPIYSLYTSF FANLIYFLMG TSRHVSVGIF 251 300 ENSP00000354721/1-701 SLLCLMVGQV VDRELQLAGF DPSQDGLQPG ANSSTLNGSA AML-----DC ENSBTAP00000009210/1-706 SLLCLMVGQV VDRELLLAGF DPAQDGLGPG ANRSSLNGSA AALVLGLQDC ENSTTRP00000000098/1-706 SLLCLMVGQV VDRELLQAGF DPAQDGPGPG ANRSALNASA TMPALGLQDC bmy_12246T0/1-865 SLLCLMVGQV VDRELLLAGF DPAQDGPGPG ANRSALNASA TMLALGLQDC BACU018328/1-706 SLLCLMVGQV VDRELLLAGF DPAQDGPGPG ANRSALNASA TMLALGLQDC 301 350 ENSP00000354721/1-701 GRDCYAIRVA TALTLMTGLY ---------- ---------- ---------- ENSBTAP00000009210/1-706 ARDCYAIRVA TALTLVAGLY ---------- ---------- ---------- ENSTTRP00000000098/1-706 SRDCYAIRVA TALTLLAGVY ---------- ---------- ---------- bmy_12246T0/1-865 SRDCYAIRVA TALTLLAGIY QAAVDGVHVG NEQCEGGRSG SALCPRPAAL BACU018328/1-706 SRDCYAIRVA TALTLLAGIY ---------- ---------- ---------- 351 400 ENSP00000354721/1-701 -----QVLMG VLRLGFVSAY LSQPLLDGFA MGASVTILTS QLKHLLGVRI ENSBTAP00000009210/1-706 -----QVLMG ILGLGFVSAY LSQPLLDGFA MGASVTILTS QLRHLLGVRV ENSTTRP00000000098/1-706 -----QVLMG ILGLGFVSAY LSQPLLDGFA MGASVTILTS QLRHLLGVRV bmy_12246T0/1-865 TTLCLQVLMG VLGLGFVSAY LSQPLLDGFA MGASVTILTS QLRHLLGVRV BACU018328/1-706 -----QVLMG VLGLGFVSAY LSQPLLDGFA MGASVTILTS QLRHLLGVRV 401 450 ENSP00000354721/1-701 PRHQGPGMVV LTWLSLLRGA GQANVCDVVT STVCLAVLLA AKELSDRYRH ENSBTAP00000009210/1-706 PRHQGPGLVV STWLSLLRSA GQANLCDVLT SAVCLAVLLA AKELSDRFRH ENSTTRP00000000098/1-706 PRHQGPGLVV STWLSLLRSA GQANLCDVLT SAACLAVLLA AKELSDRYRR bmy_12246T0/1-865 PRHQGPGLVV STWLSLLRSA GQANLCDVLT SAACLAVLLA AKELSDRYRH BACU018328/1-706 PRHQGPGLVV STWLSLLRSA GQANLCDVLT SATCLAVLLA AKELSDRYRH 451 500 ENSP00000354721/1-701 RLRVPLPTEL LVIVVATLVS HFGQLHKRFG SSVAGDIPTG FMPPQVPEPR ENSBTAP00000009210/1-706 RLRVPLPAEL LVIVVATIVS HLGQFHERFG SSVAGDIPTG FMAPRVPDAG ENSTTRP00000000098/1-706 HLKVPLPAEL LVIGAATLVS HFGQFHERFG SSVAGDIPTG FMAPHVPDPA bmy_12246T0/1-865 HLKVPLPAEL LVIGAATLVS HFGQFHERFG SSVAGDIPTG FMAPHVPEPG BACU018328/1-706 HLKVPLPAEL LVIGAATLVS HFGQFHERFG SSVAGDIPTG FMAPHVPEPG 501 550 ENSP00000354721/1-701 LMQRVALDAV ALALVAAAFS ISLAEMFARS HGYSVRANQE LLAVGCCNVL ENSBTAP00000009210/1-706 LMWRVALDAA SLALVGSAFS ISLAEMFARS HGYAVRANQE LLAVGCCNVL ENSTTRP00000000098/1-706 LVWRVALDAA SLALVGSAFS ISLAEMFARS HGYSVRANQE LLAVGCCNVL bmy_12246T0/1-865 LVWRVALDAA SLALVSSAFS ISLAEMFARS HGYSVRANQE LLAVGCCNVL BACU018328/1-706 LVWHVALDAA SLALVSSAFS ISLAEMFARS HGYSVRANQE LLAVGCCNVL 551 600 ENSP00000354721/1-701 PAFLHCFATS AALAKSLVKT ATGCRTQLSS VVSATVVLLV LLALAPLFHD ENSBTAP00000009210/1-706 PAFFHCFATS AALAKSLVKT ATGCHTQLSS VVSAAVVLMV LLVLAPLFRD ENSTTRP00000000098/1-706 PAFFHCFATS ATLAKSLVKT ATGCRTQLSS AVSAAVVLLV VLALAPLFRD bmy_12246T0/1-865 PAFFHCFATS AALAKSLVKT ATGCRTQLSS AVSAAVVLLV VLALAPLFRD BACU018328/1-706 PAFFHCFATS AALAKSLVKT ATGCRTQLSS AVSATVVLLV VLALAPLFRD 601 650 ENSP00000354721/1-701 LQRSVLACVI VVSLRGALRK VWDLPRLWRM SPADALVWAG TAATCMLVST ENSBTAP00000009210/1-706 LQRSVLACVI LVSLRGALRK VRDVPRLWRL SPADALVWVA TAATCVLVST ENSTTRP00000000098/1-706 LQRSVLACII IVSLRGALRK VRDVPRLWRL SPADALVWVA TAATCVLVST bmy_12246T0/1-865 LQRSVLACII IVSLRGALRK VRDVPRLWRL SPADALVWVA TAATCVLVST BACU018328/1-706 LQRSVLACII IVSLRGALRK VWDVPRLWRL SPADALVWVA TAATCVLVST 651 700 ENSP00000354721/1-701 EAGLLAGVIL SLLSLAGRTQ RPRTALLARI GDTAFYEDAT EFEGLVPEPG ENSBTAP00000009210/1-706 EAGLLAGVLF SLLSLAGRTR HPRTALLARA GGSSFYGDPA EFEGLAPEPG ENSTTRP00000000098/1-706 EAGLLAGILL SLLSLAGRTR HPHAALLARA GDSSFYGDPA EFEGLVPEPG bmy_12246T0/1-865 EAGLLAGILL SLLSLAGRTR HPRAALLARA GDSSFYGDPA EFEGLVPEPG BACU018328/1-706 EAGLLAGILL SLLSLAGRTR HPRAALLARA GDSSFYGDPA EFEGLVPEPG 701 750 ENSP00000354721/1-701 VRVFRFGGPL YYANKDFFLQ SLYSLTGLDA GCMAARRKEG GSETGVGEGG ENSBTAP00000009210/1-706 VQVFRFTGPL YYANKDFFLQ SLYSLTGLDV GYAIARRKER GPGEGAGEGD ENSTTRP00000000098/1-706 VQVFRFTGPL YYANKDFFLR SLYSLTGLNA GYAAAWRKER GPRVGAGEAE bmy_12246T0/1-865 VQVFRFTGPL YYANKDFFLR SLYSLTGLNA GYAAARRKER GPGVGAGEGE BACU018328/1-706 VQVFRFTGPL YYANKDFFLR SLYSLTGLNA GYTAARRKER GPGVGAGEGE 751 800 ENSP00000354721/1-701 PAQGEDLGPV STRAALVPAA AGFHTVVIDC APLLFLDAAG VSTLQDLRRD ENSBTAP00000009210/1-706 PVGGRDPGSG SGGASLVPAV TRFHAVVIDC APLLFLDVAG LATLQELHRD ENSTTRP00000000098/1-706 PVEGRDLGPG SSTAALVPSA TRFHAVIIDC APLLFLDAAG LATLQDLRRD bmy_12246T0/1-865 PVEGRDLGPG SSTAALVPSA TCFHAVVIDC APLLFLDAAG LATLQDLRRD BACU018328/1-706 PVEGRDLGPG SSTAALVPSA TCFHTVVIDC APLLFLDAAG LATLQDLRRD 801 850 ENSP00000354721/1-701 YGALGISLLL ACCSPPVRDI LSRGGFLGEG PGDTAEEEQL FLSVHDAVQT ENSBTAP00000009210/1-706 YGALGISLLL ACCNPSVTDT LRRGGFLGED QGDVAEDGQL FPSVHCAVQA ENSTTRP00000000098/1-706 YGALGITLLL ACCGPSVRDT LRRGGFLGED PGDAAEEGQL FPSVHCAVQA bmy_12246T0/1-865 YGALGITLLL ACCSPSVRDT LRRGGFLGED QGDAAEEGQL FPSVHCAVQA BACU018328/1-706 YGALGITLLL ACCSPSVRDT LSRGGFLGED QGDAAEEGQL FPSVHCAVQA 851 900 ENSP00000354721/1-701 ARARHRELEA TDAHL ENSBTAP00000009210/1-706 ARARHQELAA SNSIL ENSTTRP00000000098/1-706 ARARCQEPVA ANYTL bmy_12246T0/1-865 ARARCQELVA TNSTL BACU018328/1-706 ARARCQELVA ANSTL