KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:32 2014 Check: 00 .. Name: ENSP00000247933/1-653 Len: 1165 Check: 3234 Weight: 1.00 Name: BACU009120/1-1138 Len: 1165 Check: 443 Weight: 1.00 Name: bmy_12247T0/1-388 Len: 1165 Check: 2478 Weight: 1.00 Name: ENSBTAP00000009212/1-643 Len: 1165 Check: 3030 Weight: 1.00 Name: ENSTTRP00000000097/1-599 Len: 1165 Check: 7931 Weight: 1.00 // 1 50 ENSP00000247933/1-653 MRPLRPRAAL LALLASLLAA PPVAPAEAPH LVHVDAARAL WPLRRFWRST BACU009120/1-1138 -MCSRPKSAQ RCQGLQRKPG TRAR-ASAVH ASPIAHACSP TP------TC bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 MRPPRPSAAL LAVLGALWVA ALVA-AEAPH LVRVDAARAL RPLRPFWRST ENSTTRP00000000097/1-599 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000247933/1-653 GFCPPLPHSQ ADQYVLSWDQ QLNLAYVGAV PHRGIKQVRT HWLLELV--T BACU009120/1-1138 GTLEPVRCHK FNFYPSAFFS LLPVVTFGGG RGGPPLRTCC GAGLRRWEDA bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 GFCPPLPHGQ ADRYDLSWDQ QLNLAYVGAV PHGGIEQVRT HWLLDLI--T ENSTTRP00000000097/1-599 ---PPLPHSQ ADRYDLSWDQ QLNLAYVGAV PHGGMEQVRT HWLLDLI--T 101 150 ENSP00000247933/1-653 TRGSTGRGLS YNFTHLDGYL DLLRENQLLP GFELMGSASG HFTDFEDKQQ BACU009120/1-1138 VWGSARQGLS YNFTHLDRYL DLLRENQLVP GFELMGSPSG RFTDFEDKRQ bmy_12247T0/1-388 --GSARQGLS YNFTHLDRYL DLLRENQLVP ---------- ---------- ENSBTAP00000009212/1-643 ARGLVGQGLR YNFTHLDRYL DLLRENQLVP GFELMGSPSG RFTNFEDKQQ ENSTTRP00000000097/1-599 ARGSARQGLS YNFTHLDRYL DLLRENQLVP GFELMGSPSG RFTDFEDERQ 151 200 ENSP00000247933/1-653 VFEWKDLVSS LARRYIGRYG LAHVSKWNFE TWNEPDHHDF DNVSMTMQGF BACU009120/1-1138 VFEWKDLVSL LARRYIGRYG LKHVSKWNFE TWNEPDHHDF DNVSMTLQGF bmy_12247T0/1-388 ---------- ------GRYG LKHVSKWNFE TWNEPDHHDF DNVSMTLQG- ENSBTAP00000009212/1-643 VFEWRNLVSL LARRYIGRYG LEHVSKWNFE TWNEPDHHDF DNVSMTLQGF ENSTTRP00000000097/1-599 VFEWKNLVSL LARRYIGRYG LKHVSKWNFE TWNEPDHHDF DNVSMTLQGF 201 250 ENSP00000247933/1-653 LNYYDACSEG LRAASPALRL GGPGDSFHTP PRSPLSWGLL RHCHDGTNFF BACU009120/1-1138 LNYYDACSEG LRAASSALRL GGPGDSFHPL PRSPLCWGLL GHCHNGTNFF bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 LNYYDACSEG LRAASPALRL GGPGDAFHAP PRSPLCWGLL GHCNNGSNFF ENSTTRP00000000097/1-599 LNYYDACSEG LRAASSALRL GGPGDSFHPL PRSPLCWGLL EHCHNGTNFF 251 300 ENSP00000247933/1-653 TGEAGVRLDY ISLHRKGARS SISILEQEKV VAQQIRQLFP KFADTPIYND BACU009120/1-1138 TGEVGVRLDY IALHKKGAGS SIYILEQEAA VVRQIQRLFP KFADTPVYND bmy_12247T0/1-388 ---------- -GASAQGAGS SIYILEQEAA VVRQIQRLFP KFADTPVYND ENSBTAP00000009212/1-643 TGEVGVRLDY IALHKKGAGS SIFILEQEAA VVQQIQRLFP KFADTPIYND ENSTTRP00000000097/1-599 TGEVGVRLDY IALHKKGAGS SIYILEQEAA VVRQIQRLFP KFADTPVYND 301 350 ENSP00000247933/1-653 EADPLVGWSL PQPWRADVTY AAMVVKVIAQ HQNLLLANTT SAFPYALLSN BACU009120/1-1138 EADPLVGWSL PEPWRADVTY AAMVVKVIAQ HQNLLVANTS SSVRYALLSN bmy_12247T0/1-388 EADPLVGWSL PQPWRADVTY AAMVVKVIAQ HQNLLVANTS SSVRYALLSN ENSBTAP00000009212/1-643 EADPLVGWSL PQPWRADVTY AAMVVKVVAQ HQNLLLANAS SAVRYALLSN ENSTTRP00000000097/1-599 EADPLVGWSL PQPWRADVTY AAMVVKVIAQ HQNLLVANSS SSVRYALLSN 351 400 ENSP00000247933/1-653 DNAFLSYHPH PFAQRTLTAR FQVNNTRPPH VQLLRKPVLT AMGLLALLDE BACU009120/1-1138 DNAFLSYHPH PFSQRTLTAR FQVNNTRPPH VQLLRKPVLT AMALLALLAT bmy_12247T0/1-388 DNAFLSYHPH PFSQRTLTAR FQVNDTRPPH VQLLRKPVLT AMALLALLDG ENSBTAP00000009212/1-643 DNAFLSYHPH QFSQRTLTAR FQVNDTRPPH VQLLRKPVLT AMALLALLDG ENSTTRP00000000097/1-599 DNAFLSYHPH PFSQRTLTAR FQVNNTRPPH VQLLRKPVLT AMALLALLDG 401 450 ENSP00000247933/1-653 EQLWAE---- -VSQAGTVLD SNHTVGVLAS AHRPQGPADA WRAAVLIYAS BACU009120/1-1138 TR-WASWPAP TPPRGGTVLD SNHTVGVRAS APPPTGPADA WRATVLVYAS bmy_12247T0/1-388 EQLWAE---- -VSRGGTVLD SNHTVGVLAS AHPATGPADA WRATVLVYAS ENSBTAP00000009212/1-643 EQLWAE---- -VSRGGTVLD SNHTVGVLAS VHRPTGPADA WRATVLVYGS ENSTTRP00000000097/1-599 EQLWAE---- -VSRDGTVLD SNHTVGVLAS THHPMGPADA WRATVLVYAS 451 500 ENSP00000247933/1-653 DDTRAHPNRS VAVTLRLRGV PPGPGLVYVT RYLDNGLCSP DGEWRRLGRP BACU009120/1-1138 DDTRAHANRS VPLTLSLHGV PPGPEVVFVQ LYMDNWLCSP YGEWRRLGRP bmy_12247T0/1-388 DDTRAHASRS VPLTLSLHGV PPGPEVVFVQ LYMDNWLCSP YGEWRRLGRP ENSBTAP00000009212/1-643 DDTRAHANRT VPLILSLQGV PPGPEVVFVE LYVDNWLCNP YGEWRRLGMP ENSTTRP00000000097/1-599 DDTRAHANRS VPLTLSLYGV PPGPEVVFVQ LYMDNWLCSP YGEWRRLGRP 501 550 ENSP00000247933/1-653 VFPTAEQFRR MRAAEDPVAA APRPLPAGGR LTLRPALRLP SLLLVHVCAR BACU009120/1-1138 VYPSAEQFRR MRAAEDPATV VPLPFPSSGR LTLRPELPVP SLWLVH---- bmy_12247T0/1-388 VYPSAEQFRR MRAAEVRGER GP-------- ---------- --WL------ ENSBTAP00000009212/1-643 VFPSAAQFRR MRAAEDPAAV KPRSFPSSGR LTLRPPLALP SLLLVHVCAR ENSTTRP00000000097/1-599 VYPSAEQFRR MRAAEDPAAV MPLPFPSSGR LTLRPELPLP SLWLVHVCAR 551 600 ENSP00000247933/1-653 PEKPPGQVTR LRALPLTQGQ LVLVWSDEHV GSKCLWTYEI QFSQ------ BACU009120/1-1138 --------TR LRALPLTRGQ LLLVWSDERV GSKCV-CLLP QHSPCGEGSR bmy_12247T0/1-388 ---------- --CLTFPR-- ---------- ---CLWTYEI QFSA------ ENSBTAP00000009212/1-643 PEEPPGQVTR LRALPLTRGQ LLLVWSDERV GSKCLWTYEI QFCP------ ENSTTRP00000000097/1-599 PEEPPGQVTR LRALPLTRGQ LLLVWSDERV GSKCLWTYEI QFSP------ 601 650 ENSP00000247933/1-653 -------DGK AYTPVSRKPS TFNLFVFSPD TGAVSGSYRV RALDYWARPG BACU009120/1-1138 ASRHLELGGI RGVQVEEQAC TF----VSSD TAVVSGSYRV RAVDYWARPG bmy_12247T0/1-388 -------EGV VYLPISRKPS TFNLFVFSPG VPAAS----- -AQSLWGGVQ ENSBTAP00000009212/1-643 -------EGG VFAPISRKPS TFNLFVFSPD TAVVSGSYRV CAVDYWARPG ENSTTRP00000000097/1-599 -------EGV VYLPINRKHS TFNLFVFSPD TAVVSGSYRV RAVDYWARPG 651 700 ENSP00000247933/1-653 PFSDP-VPYL EVPVPR---- ---------- ---------- ---------- BACU009120/1-1138 PFSSP-VWYL GAPAPPLCPQ VFCLRRSESG PPAELLDAAC LSQTCTLVLR bmy_12247T0/1-388 GLSAPGVW-- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 PFSSP-VRYL EAPAS----- ---------- ---------- ---------- ENSTTRP00000000097/1-599 PFSSP-VWYL GVPAP----- ---------- ---------- ---------- 701 750 ENSP00000247933/1-653 ---------- ---------- ---------- ---------- ---------- BACU009120/1-1138 AGGPWSLQAV LASVRPGLRW TCGSPAQALR GPPRMADKVV PRQVARLGRT bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000097/1-599 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000247933/1-653 ---------- ---------- ---------- ---------- ---------- BACU009120/1-1138 VRLQCPVEGD PPPLTMWTKD GRTIHGGWSR FRVLPQGLKV KEVERGDAGA bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000097/1-599 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000247933/1-653 ---------- ---------- ---------- ---------- ---------- BACU009120/1-1138 YVCKATNGFG SLSVNYTLIV MDDTSPGRES PGHDGSSGGQ EDPASKQWAR bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000097/1-599 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000247933/1-653 ---------- ---------- ---------- ---------- ---------- BACU009120/1-1138 PRFTQPSKMR RRVIARPVGS SVRLKCVASG HPRPDIMWMK DDQALTRPEA bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000097/1-599 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000247933/1-653 GPPSPGNP-- ---------- ---------- ---------- ---------- BACU009120/1-1138 GEHRKKKWTL SLKNLRPEDS GKYTCRVSNR AGAINATYKV DVIQRTRSKP bmy_12247T0/1-388 GDQRGSG--- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000097/1-599 GPLLPRDW-- ---------- ---------- ---------- ---------- 951 1000 ENSP00000247933/1-653 ---------- ---------- ---------- ---------- ---------- BACU009120/1-1138 VLTGTHPVNT TVDFGGTTSF QCKVRSDVKP VIQWLKRVEY GAEGRYNSTI bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000097/1-599 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000247933/1-653 ---------- ---------- ---------- ---------- ---------- BACU009120/1-1138 DVGGQKFVVL PTADASGDSR SSKEDSGDGC TPRAPGKEGG KQGSSLLQSY bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000097/1-599 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000247933/1-653 ---------- ---------- ---------- ---------- ---------- BACU009120/1-1138 KAQPAQPRLP KCAAGGICFP PSGCGPDPGE RSRQSGGKFQ PQPVIDGFSG bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000097/1-599 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000247933/1-653 ---------- ---------- ---------- ---------- ---------- BACU009120/1-1138 TRPCLFAPHC EGQTSQYTWP QLVRLKHAIP CGGWKQRLQN TQPAMLRSGF bmy_12247T0/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009212/1-643 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000097/1-599 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000247933/1-653 ---------- ----- BACU009120/1-1138 CCRRCRKAQA HPKPS bmy_12247T0/1-388 ---------- ----- ENSBTAP00000009212/1-643 ---------- ----- ENSTTRP00000000097/1-599 ---------- -----