KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:43 2014 Check: 00 .. Name: bmy_03072T0/1-264 Len: 477 Check: 5561 Weight: 1.00 Name: ENSP00000460823/1-476 Len: 477 Check: 9566 Weight: 1.00 Name: ENSBTAP00000009229/1-473 Len: 477 Check: 4989 Weight: 1.00 Name: BACU006861/1-387 Len: 477 Check: 5128 Weight: 1.00 Name: ENSTTRP00000011324/1-476 Len: 477 Check: 1112 Weight: 1.00 // 1 50 bmy_03072T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000460823/1-476 MAFGKSHRDP YATSVGHLIE KATFAGVQTE DWGQFMHICD IINTTQDGPK ENSBTAP00000009229/1-473 MAFGRSHRDP YANSLGQLIE KATFAGVQTE DWGQFMHICD IINTTQDGPK BACU006861/1-387 MAFGKSHRDP YATSVGQLIE KATFAGVQTE DWGQFMHICD IINTAHDGPK ENSTTRP00000011324/1-476 MAFGKSHRDP YATSVGQLIE KATFAGVQTE DWGQFMHICY IINTAHDGPK 51 100 bmy_03072T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000460823/1-476 DAVKALKKRI SKNYNHKEIQ LTLSLIDMCV QNCGPSFQSL IVKKEFVKEN ENSBTAP00000009229/1-473 DAVKALKKRI SKNYNHKEIQ LTLSLIDMCM QNCGPSFQSL IVKKEFVKDS BACU006861/1-387 DAVKALKKRI SKNYNHKEIQ LTLSLIDMCM QNCGPSFQSL IVKKEFVKDS ENSTTRP00000011324/1-476 DAVKALKKRI SKNYNHKEIQ LTLSLIDVCM QNCGPSFQSL IVKKEFVKDS 101 150 bmy_03072T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000460823/1-476 LVKLLNPRYN LPLDIQNRIL NFIKTWSQGF PGGVDVSEVK EVYLDLVKKG ENSBTAP00000009229/1-473 LVKLLNPRYT LPIDIQNRIL NFIKTWSQGF PGGVDVSEVK DVYLDLLKKG BACU006861/1-387 LVKLLSPRYT LPIGIQNRIL NSIKTWSQGF PGAVDVSEVK EVYLDLLKKG ENSTTRP00000011324/1-476 LVKLLSPRYT LPIDIQNRIL NFIKTWSQGF PGAVDVSEVK EVYLDLLKKG 151 200 bmy_03072T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000460823/1-476 VQFPPSEAEA ETARQETAQI SSNPPTSVPT APALSSVIAP KNSTVTLVPE ENSBTAP00000009229/1-473 VQFPSSDAET ETARQE---M SLNPPPSVPS APALPSIV-P KISTITLVPE BACU006861/1-387 VQFPPIDAAA ETARQETAQI SPNTPVSVPT APALSSVV-P KSSTIILVPE ENSTTRP00000011324/1-476 VQFPPSDAVA ETARQETAQI SPNPPPSVPT APALSSVV-S KSSTIILVPE 201 250 bmy_03072T0/1-264 ---------- ---MNVRVMS AILMENIAGS ENCEDKELLQ KLYQTGREMQ ENSP00000460823/1-476 QIGKLHSELD MVKMNVRVMS AILMENTPGS ENHEDIELLQ KLYKTGREMQ ENSBTAP00000009229/1-473 QIGKLHSELD MVKMNVRVMS AILMENIPGS ENHEDIELLQ KLYKTGREMQ BACU006861/1-387 QIGKLHSELD MVKMNVRVMS AILMENIPGS ENREDMELLQ KLHKTGREMQ ENSTTRP00000011324/1-476 QIGKLRSELD MVKMNVRVMS AILIENIPGS ENHEDTELLQ KLYKTGREMQ 251 300 bmy_03072T0/1-264 ERSMDLLVVV EKEDVTVELV QVNEDFSNTT LGYERFTRNQ QRILKQNKNQ ENSP00000460823/1-476 ERIMDLLVVV ENEDVTVELI QVNEDLNNAI LGYERFTRNQ QRILEQNKNQ ENSBTAP00000009229/1-473 ERIMDLLVVV ENEDVTAELI QVNEDLNNAI LGCERFTRNQ QRILEQNKSQ BACU006861/1-387 ERIMDLLVVV ENEDVTVELI QVNEDLNNAI LGYERFIRNQ QRILEQNKNQ ENSTTRP00000011324/1-476 ERIMDLLVVV ENEDVTVELI QVNEDLNNAI LGYERFIRNQ QRILEQNKNQ 301 350 bmy_03072T0/1-264 GEDANTSSEP SAPSSDLLDL SPSPPTHRAT LGEYNTLNAQ LSDLNFSSPS ENSP00000460823/1-476 KEATNTTSEP SAPSQDLLDL SPSPRMPRAT LGELNTMNNQ LSGLNFSLPS ENSBTAP00000009229/1-473 REDANTTSEP SAPSSDLLDL SPSLPTPRTT LGEVSTLNAQ LSDLNFSSLR BACU006861/1-387 REDAN----- ---------- ---------- ---------- ---------- ENSTTRP00000011324/1-476 REDANTTSEP SAPSSDLLDL SRSSLMHRAT LGELSTLNAQ LSDLNFSSTS 351 400 bmy_03072T0/1-264 PVVTNNLKPS LHPQVDLLAS ENTETPLFAQ RTNQNLASSH TYESFLEYSN ENSP00000460823/1-476 SDVTNNLKPS LHPQMNLLAL ENTEIPPFAQ RTSQNLTSSH AYDNFLEHSN ENSBTAP00000009229/1-473 PVVPNNFKPS LNTQVDLLAL ENTETPLFAQ RTSQNLASSH TYESFLEHSN BACU006861/1-387 ---------- ---------- ---------- ---------- ----FPEYSN ENSTTRP00000011324/1-476 PVVTNNLKPS LHPQVDLLAS ENTETPLFVQ RTSQNLASSP TYESFPEYSN 401 450 bmy_03072T0/1-264 SVLLQPVSLQ IIPATPSKQR LPSLPSNQPA MTKNDFQPPN YYEVMEFDPL ENSP00000460823/1-476 SVFLQPVSLQ TIAAAPSNQS LPPLPSNHPA MTKSDLQPPN YYEVMEFDPL ENSBTAP00000009229/1-473 SVLLQPVSLQ TVPATPSNQR LPPLPSNHPA MTKNDLQPPN YCEVMEFDPL BACU006861/1-387 SVLLQPVTLK TTPATPSNQR LPSLPSNHPA MTKNDFQPPN YHEVMEFDPL ENSTTRP00000011324/1-476 SVLLQPVTLK TIPATPSNQT PPSLPSNHPA MTKNDFQPPN YYEVMEFDPL 451 500 bmy_03072T0/1-264 APAVTTEAIY EDTDVYHYKG AQSHNDC ENSP00000460823/1-476 APAVTTEAIY EEIDAHQHKG AQNDGD- ENSBTAP00000009229/1-473 APAVTTEAVY EEIDVHPHKG AQSHSNC BACU006861/1-387 APAVTTEAIY EDIDVHHHKG AQSHTDC ENSTTRP00000011324/1-476 APAVTTEAIY EDIDVHHHKG AQSHSDR