KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:44 2014 Check: 00 .. Name: ENSTTRP00000001882/1-696 Len: 706 Check: 3384 Weight: 1.00 Name: ENSP00000336524/1-703 Len: 706 Check: 7612 Weight: 1.00 Name: BACU003179/1-543 Len: 706 Check: 863 Weight: 1.00 Name: bmy_04739T0/1-509 Len: 706 Check: 5010 Weight: 1.00 Name: ENSBTAP00000009235/1-705 Len: 706 Check: 1777 Weight: 1.00 // 1 50 ENSTTRP00000001882/1-696 MEALLEGIQ- NRGHDGGFLT SCEAELQELM KQIDIMVAHK KSAWEGQTHV ENSP00000336524/1-703 MEALLEGIQ- NRGHGGGFLT SCEAELQELM KQIDIMVAHK KSEWEGRTHA BACU003179/1-543 MEALLEGIQ- NRGHDGGFLT SCEAELQELM KQIDIMVAHK KSEWEGQTHA bmy_04739T0/1-509 MEAGLKSEQV SRGH-----M TLEAGLKS-- ---------- ---------- ENSBTAP00000009235/1-705 MEALLEGIQ- NRGHDGGFLT SCEAELQELM KQIDIMVAHK KSEWEGQTHA 51 100 ENSTTRP00000001882/1-696 LETCLDSRER ELKALRSQVG MKHKEVGMLR QQVEEHEKVK QEMAIEYKLE ENSP00000336524/1-703 LETCLKIREQ ELKSLRSQLD VTHKEVGMLH QQVEEHEKIK QEMTMEYKQE BACU003179/1-543 LETCLDIRER ELKALRSQVD MKHKEVGMLR QQVEEHEKVK QEMAMEYKLE bmy_04739T0/1-509 -EPCLAALQ- ---------- ---------- ---------- ---------- ENSBTAP00000009235/1-705 LETCLDIRER ELKALRSQLD LKHKEIGMLR QQVEKHEKVK QEMAMEYKQE 101 150 ENSTTRP00000001882/1-696 LKNLHEELGR LKRSYEKLQR KHVRDFRGNA RNHREDRSEI ERLTGKIEEF ENSP00000336524/1-703 LKKLHEELCI LKRSYEKLQK KQMREFRGNT KNHREDRSEI ERLTAKIEEF BACU003179/1-543 LKKLHEELGR LKRSYEKLQR KHVRDFRGNA KNHREDRSEI ERLTGKIEEF bmy_04739T0/1-509 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009235/1-705 LKKLHEELSR LKRSYEKLQK KHVRDFRGNA KNHREDRSEI ERLTGKIEEF 151 200 ENSTTRP00000001882/1-696 RQKSLDWEKQ RLIYQQQVSS LEAQRKALAE QSEIIQXXXX XXXXXXXXXX ENSP00000336524/1-703 RQKSLDWEKQ RLIYQQQVSS LEAQRKALAE QSEIIQAQLV NRKQKLESVE BACU003179/1-543 RQKSLDWEKQ RLIYQQQVSS LEAQRKALAE QSEIIQAQLA NRKQKLESVE bmy_04739T0/1-509 ----LKW--- --IYAEVPLN L--------- ------AQLA NRKQKLESVE ENSBTAP00000009235/1-705 RQKSLDWEKQ RLIYQQQVSS LEAQRKALAE QSEIIQAQLA NRKQKLESVE 201 250 ENSTTRP00000001882/1-696 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000336524/1-703 LSSQSEIQHL SSKLERANDT ICANELEIER LTMRVNDLVG TSMTVLQEQQ BACU003179/1-543 LSSQSEIQHL SSKLERANDT ICANELEIER LTMRVNDLVG TNMTIMQDQQ bmy_04739T0/1-509 LSSQSEIQHL SSKLERANDT ICANELEIER LIMRVNDLVG TNMTIMQDQQ ENSBTAP00000009235/1-705 LSSQSEIQHL SSKLERANDT ICANELEIER LTMRVNDLVG TNMTIMQEQR 251 300 ENSTTRP00000001882/1-696 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000336524/1-703 QKEEKLRESE KLLEALQEEK RELKAALQSQ ENLIHEARIQ KEKLQEKVKA BACU003179/1-543 QKEEKLRESE KLLEVLQEEK RELKAALQTQ ENFMHETRIQ KEKLQAKLKA bmy_04739T0/1-509 QKEEKLRESE KLLEVLQEEK RELKAALQTQ ENFMHETRIQ KEKLQAKLKA ENSBTAP00000009235/1-705 QKEEKLKESE KMLEVLQEEK RGLKAALQTQ ENFIHDARIQ KEKLQAKLKA 301 350 ENSTTRP00000001882/1-696 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000336524/1-703 TNTQHAVEAI RPREESLAEK KYTSQGQGDL DSVLSQLNFT HTSEDLLQAE BACU003179/1-543 TDTQHTVETI RSLEESQAER RYASQGQGDL ENVLSRLDFT HTSEELLQAE bmy_04739T0/1-509 TDTQHTVETI RSLEESQAER RYASQGQGDL ENVLSRLDFT HTSEEFLQAE ENSBTAP00000009235/1-705 VDTQHTVETI RSLEEPLAER RYASQGQGDL QNVLCQLDFT HTSEELLQAE 351 400 ENSTTRP00000001882/1-696 XXXXXXXLES VSTTCKQLSQ ELMEKYEELK KMEVHNNEYR AEIKKLKEQI ENSP00000336524/1-703 VTCLEGSLES VSATCKQLSQ ELMEKYEELK RMEAHNNEYK AEIKKLKEQI BACU003179/1-543 VTRLEGSLES VSTTCKQLSQ ELMEKYEELK KMEVHNNEYR AEIKKLKEQI bmy_04739T0/1-509 VTRLEGSLES VSITCKQLSQ ELMEKYEELK KMEVHNNEYR AEIKKLKEQI ENSBTAP00000009235/1-705 VTRLEGSLES VSATCKQLSQ ELMEKYGELK KMEVHNNEYR AEIKKVKKQI 401 450 ENSTTRP00000001882/1-696 LQAEQSYSSV LEGMKMEISQ LTRELHQRDI TIASTKSSSD EKLAEMQAE- ENSP00000336524/1-703 LQGEQSYSSA LEGMKMEISH LTQELHQRDI TIASTKGSSS DMEKRLRAEM BACU003179/1-543 LQAEQSYSSV LDGMKMEISQ LTRELHQRDI TIASTKSSSS DMEKQLKAEI bmy_04739T0/1-509 LQAEQSYSS- ---------- ---------- ---------- ---------- ENSBTAP00000009235/1-705 LQAEQSYSSV LEGMKMEISQ LTRELHQRDI TIASTKSSSS DMEKRLKAEI 451 500 ENSTTRP00000001882/1-696 -----KAVEH -EILAQLESL KLENHRLSEM VMKLELGLHE XXXXXXXXXX ENSP00000336524/1-703 QKAEDKAVEH KEILDQLESL KLENRHLSEM VMKLELGLHE AKEISLADLQ BACU003179/1-543 QKAEEKAVEH KEILAQLESL KLENHRLSEM VMKLELGLHE V--------- bmy_04739T0/1-509 ---------- -EILAQLESL KLENHRLSEM VMKLELGLHE AKEVSLADLQ ENSBTAP00000009235/1-705 QKAEEKAVEH KEMLGQLESL KLENRHLSEM VMKLELGLHE AKEISLADLQ 501 550 ENSTTRP00000001882/1-696 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000336524/1-703 ENYIEALNKL VSENQQLQKD LMNTKSQLEI STQMCKKQND RIFKPTHSRT BACU003179/1-543 ---------L LFRGSALGTM LLKEPGALSV HWTIA----- ---------- bmy_04739T0/1-509 ENYIEALNKL VSENQQLQKD LMDTKAQLEI STQICKKNHD RIFKPTHSRV ENSBTAP00000009235/1-705 ENYIEALNKL VSENQQLQKD LMDTKGQLEI STQICKKNRD RIFKPTYSRV 551 600 ENSTTRP00000001882/1-696 XXXXXXXXXP ASGQRKHDGM EAEHYKAGLH STQGQALDSV EAV--SWGLT ENSP00000336524/1-703 TEFKNTEFKP THGQHRHDGI KTEHYKTDLH SPRGQASDSI NPM--SRVLS BACU003179/1-543 ---------- ---------- ---------- ---------- -----FRDIN bmy_04739T0/1-509 PEFKNTEFKP TSGQRKHDGM KAEHYKAGLH STQGQASDSV EPV--SRGLS ENSBTAP00000009235/1-705 PEFKNTEFKP AHGQHRHDGM KAEPYKAGLH SPQGQASDSI EPVSLSRGFS 601 650 ENSTTRP00000001882/1-696 PPSHQISPCC STISLPSNFL CKTHSLPSVL DTNETNFSDT VSESINDQED ENSP00000336524/1-703 PLSPQISPCS STRSLTSYSL CKTHSLPSAL DTNEANFSDT MSESMNDQEE BACU003179/1-543 PPEDSPEGAS KAICVPE--- ---------- ---------- ---------- bmy_04739T0/1-509 PPSHQISPCC STSSLPSNFL CKTHSLPSVL DTDETNFSDT VSESINDQED ENSBTAP00000009235/1-705 PPSHQISSCC STVSLPSNFL CKTNSLPSVL DTNETNFSDT VSESINDPED 651 700 ENSTTRP00000001882/1-696 FIYSRPLPLS PLGSIATRFL EEEELRSHHI LERLDAHIEE LKRESEKTVK ENSP00000336524/1-703 FISSCSLPVS PLGSIATRFL EEEELRSHHI LERLDAHIEE LKRESEKTVR BACU003179/1-543 ---------- ---------- -----RKHQA ---------- ---------- bmy_04739T0/1-509 FLSSCPLPLS PLGSIATRFL EEEELRSHHI LERLDAHIEE LKRESEKTVK ENSBTAP00000009235/1-705 FTSSCPLPLS PLGSIATRFL EEEELRSHHI LERLDAHIEE LKRESEKTVK 701 750 ENSTTRP00000001882/1-696 QFTALK ENSP00000336524/1-703 QFTALK BACU003179/1-543 ------ bmy_04739T0/1-509 QFTALK ENSBTAP00000009235/1-705 QFTVLK