KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:44 2014 Check: 00 .. Name: ENSP00000469759/1-679 Len: 1057 Check: 3380 Weight: 1.00 Name: ENSBTAP00000009238/1-641 Len: 1057 Check: 2772 Weight: 1.00 Name: ENSTTRP00000004359/1-555 Len: 1057 Check: 2440 Weight: 1.00 Name: BACU014409/1-1043 Len: 1057 Check: 2364 Weight: 1.00 Name: bmy_07173T0/1-460 Len: 1057 Check: 7262 Weight: 1.00 // 1 50 ENSP00000469759/1-679 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009238/1-641 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- ---------- BACU014409/1-1043 MSFRGRGRGG FNRGGGFGRG GGGSNHHFRG GGGGNFRGGG NFRGGGRGGF bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000469759/1-679 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009238/1-641 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- ---------- BACU014409/1-1043 GRGGGRGGFN KGQDQGPPEQ VVLLGEFLHP CEDDIVCKCT TDENKVPYFN bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000469759/1-679 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009238/1-641 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- ---------- BACU014409/1-1043 APVYLENKEQ IGKVDEIFGQ LRDFTEHNIV AAYLITAGMI SVLSNIIVLG bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000469759/1-679 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009238/1-641 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- ---------- BACU014409/1-1043 IFIKYKELRT PTNAIIINLA VTDIGVSSIG YPMSAASDLH GSWKFGYAGC bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000469759/1-679 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009238/1-641 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- ---------- BACU014409/1-1043 QIYAGLNIFF GMASIGLLTV VAVDRYLTIC CPDAGRRMTT NTYISMILGA bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000469759/1-679 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009238/1-641 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- ---------- BACU014409/1-1043 WINGLFWALM PIVGWASYAP DPTGATCTIN WRKNDVSFVS YTMMVVAINF bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000469759/1-679 -----MHLFA CLCIVLSFLE GVGCLCPSQC TCDYHGRND- ---------- ENSBTAP00000009238/1-641 ----AMHLFA SLCIALSLLE RVSCLCPSQC TCDYHGRND- ---------- ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- ---------- BACU014409/1-1043 IVPLIMMFYC YYHVTRSIKH HATSNCTEYL NRDWSDQVDV TKMSVIMILM bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000469759/1-679 ---------- ---------- ---------- ---------- -------GSG ENSBTAP00000009238/1-641 ---------- ---------- ---------- ---------- ------GLGS ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- ---------- BACU014409/1-1043 FLVAWSPYSI VCLWASFGDP KKIPPSMAIL APLFAKSSTF YNPCIYVIAN bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000469759/1-679 SRLVLCNDMD MNELPTNLPV DTVKLRIEKT VIRRISAEAF YYLVELQYLW ENSBTAP00000009238/1-641 SRAVLCNDLD MNEVPTNFPV DTVKLRIERT VVRRIPAEAF YYLVELQYLW ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- ---------- BACU014409/1-1043 KKSVLCSDLD MNEVPTNFPV DTVKLRIEKT VVHRIPAEAF YYLVELQYLW bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000469759/1-679 VTYNSVASID PSSFYNLKQL HELRLDGNSL AAFPWASLLD MPLLRTLDLH ENSBTAP00000009238/1-641 LTYNSVASLD VSSFYNLKHL HELRLDGNSL TAFPWTSLRD MPRLRTLDLH ENSTTRP00000004359/1-555 ---------- ---------- ---------- ---------- MPRLRTLDLH BACU014409/1-1043 LTYNSVASLD TSSFYNLKQL HELRLDGNSL AAFPWTSLRD MPRLRTLDLH bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000469759/1-679 NNKITSVPNE ALRYLKNLAY LDLSSNRLTT LPPDFLESWT HLVSTPSGVL ENSBTAP00000009238/1-641 NNRITSVPKE AVRYLKNLTY LDLSSNRLTT LPPDFLESWS HLVTASSRSL ENSTTRP00000004359/1-555 NNRITSVPNE AVMYLKNLAY LDLSSNRLTT LPPDFLDSWS HLVTASSRSL BACU014409/1-1043 NNRITSVPNE AVTYLKNLAY LDLSSNRLTT LPPDFLESWS HLVTTSSRSL bmy_07173T0/1-460 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000469759/1-679 DLSPSRIILG LQDNPWFCDC HISKMIELSK VVDPAIVLLD PLMTCSEPER ENSBTAP00000009238/1-641 DLPPRRIILG LQDNPWFCDC HISKIMSLSK VADPAIVLLD PMMVCSEPER ENSTTRP00000004359/1-555 DLSARRIILG LQDNPWFCDC HISKIMALSK VADPVVVLLD PLMVCSEPER BACU014409/1-1043 DLSARRIILG LQDNPWFCDC HISKIMALSK VADPVVVLLD PLMVCSEPER bmy_07173T0/1-460 ---------- ---------- -----MALSK VADPVVVLLD PLMVCSEPER 601 650 ENSP00000469759/1-679 LTGILFQRAE LEHCLKPSVM TSATKIMSAL GSNVLLRCDA TGFPTPQITW ENSBTAP00000009238/1-641 LTGILFQRAE LEQCVKPSVM TSATQITSAL GSNVLLRCDA TGYPTPQLTW ENSTTRP00000004359/1-555 LTGISFQRAE LEQCLKPSVM TSATQITSAL GSNVLLRCDT TGYPTPQLTW BACU014409/1-1043 LTGISFQRAE LEQCLKPSVM TSATQITSAL GSNVLLRCDT TGYPTPQLTW bmy_07173T0/1-460 LTGISFQRAE LEQCLKPSVM TSATQITSAL GSNVLLRCDT TGYPTPQLTW 651 700 ENSP00000469759/1-679 TRSDSSPVNY T--------V IQESPEEGVR WSIMSLTGIS SKDAGDYKCK ENSBTAP00000009238/1-641 TRPDNSPVNY T--------V IQESPGEGVR WSIISLTGIS YMDAGDYKCK ENSTTRP00000004359/1-555 TRPDSSPVNY T--------V IQESPGEGVR WSIISLTGIS YMDAGDYKCK BACU014409/1-1043 TRPDSSPVNY TDYAFFFLPV IQESPGEGVR WSIISLTGIS YMDAGDYKCK bmy_07173T0/1-460 TRPDSSPVNY T--------V IQESPGEGVR WSIISLTGIS YMDAGDYKCK 701 750 ENSP00000469759/1-679 AKNLAGMSEA VVTVTVLGIT TTPIPPDTSE -RTGDHPEWD VQPGSGRSTS ENSBTAP00000009238/1-641 AKNLAGMSEA VVTVS----- ---------- ---------- ---------- ENSTTRP00000004359/1-555 AKNLAGMSEA VVTVTVVGVV MTTVSSETSE RRTGDHPEQE VQLGSRTSAT BACU014409/1-1043 AKNLAGMSEA VVTVTVVGVV MTTISSETSE RRTGDHPEQE VQLGSRTSAS bmy_07173T0/1-460 AKNLAGMSEA VVTVTVVGVV MTTVSSETSE RRTGDHPEQE VQLGSRTSAS 751 800 ENSP00000469759/1-679 VSSASSYLW- ---SSSFSPT SSF-SASTLS PPSTASFSLS PFSSSTVSST ENSBTAP00000009238/1-641 ---SSSSPWP YSSS-----S STFPPTSTSS PPSTASFSLS PFFSSTVSSA ENSTTRP00000004359/1-555 LPGSSSSPWP YSSSSSFPAS STFLPTSTSS PPSTASFSLS PFFSSVVSSA BACU014409/1-1043 LPGSSSSPWP YSSSSSFPAS STFLPTSTSS PPSTASFSLS PFFSSIVSSA bmy_07173T0/1-460 LPGSSSSPWP YSSSSSFPAS STFLPTSTSS PPSTASFSLS PFFSSIVSSA 801 850 ENSP00000469759/1-679 TTLSTSISAS TTMANKRSFQ LHQGGKRNLK VAKNGSKLPP ASTSKKEELA ENSBTAP00000009238/1-641 TTPSTRISSS TTMANRQS-- LSPDGKRSAK AEMGGGKLPP ASASRREELA ENSTTRP00000004359/1-555 TTPSTRISTS TTMASRQS-- LHPDGKRNVK VEMGSGKLPP ASASKREELA BACU014409/1-1043 TTPSTRISTS TTMASRQS-- LHPDGKRNVK VEMGSGKLPP ASASKREELA bmy_07173T0/1-460 TTPSTRISTS TTMASRQS-- LHPDGKRNVK VEMGSGKLPP ASASKREELA 851 900 ENSP00000469759/1-679 LLDQTMLTET NAAIENLRVV SETKESVTLT WNMINTTHNS AVTVLYSKYG ENSBTAP00000009238/1-641 LLDRALRMEA NATIENLQVV SETEESVILT WDTINTTQNS EVTVFYSKYG ENSTTRP00000004359/1-555 LLDQALPMET NATIENLQVV SETEESVILM WNTINTTQNL EVTVLYSKYG BACU014409/1-1043 LLDQALPMET NTTIENLQVV SETEESVILM WNTINTTQNL EVTVLYSKYG bmy_07173T0/1-460 LLDQALPMET NATIENLQVV SETEESVILM WNTINTTQNL EVTVLYSKYG 901 950 ENSP00000469759/1-679 GKDLLLLNAD SSKNQVTIDG LEPGGQYMAC VCPKGVPPQK DQCITFSTER ENSBTAP00000009238/1-641 EKDLLLLNVN SSKNQVTING LLPGWQYIAC VCPKGMPPQK DQCVTFSTDR ENSTTRP00000004359/1-555 EKDLLLLNAD SSKNQVTISG LLPGWQYIAC VCPKGMPPQK DQCITFSTDR BACU014409/1-1043 EKDLLLLNAD SSKNQVTISG LLPGWQYIAC VCPKGMPPQK DQCITFSTDR bmy_07173T0/1-460 EKDLLLLNAD SSKNQVTISG LLPDRQYIAC VCPKGMPPQK DQCITFSTDR 951 1000 ENSP00000469759/1-679 VEGD-DSQWS LLLVVTSTAC VVILPLICFL LYKVCKLQCK SEPFWEDDLA ENSBTAP00000009238/1-641 A-AEGDSQEF FLMVLSGAAC VAVLPLIFFL LYKVCKLQCK PDSLWEDDLA ENSTTRP00000004359/1-555 VEEEGDSQGS FLMVVSGAAC VVVLPLIFFL LYKVCKLQCK SDSLWEDDLA BACU014409/1-1043 VEEEGDFQGS FLMVVSGAAC VVVLPLIFFL LYKVCKLQCK SDSLWEDDLA bmy_07173T0/1-460 VEEEGDSQGS FLMVVSGAAC VVVLPLIFFL LYKVCKLQCK SDSLWEDDLA 1001 1050 ENSP00000469759/1-679 KETYIQFETL FPRSQSVGEL WTRSHRDDSE KLLLCSRSSV ESQVTFKSEG ENSBTAP00000009238/1-641 KETYIQFETL SPRSQSVGEL WTRRPRAESE KLPLCSRSSV ESP-TTKSEG ENSTTRP00000004359/1-555 KETYIQFETL SPRSQSVGEL WTRRPRDDSE KLLLCSKSSV ES--TFKSEG BACU014409/1-1043 KETYIQFETL SPRSQSVGEL WTRRPRDDSE KLLLCSRSSV ESH-DF---- bmy_07173T0/1-460 KETYIQFETL SPRSQSVGEL WTRRPRDDSE KLLLCSXSSV ESH-DF---- 1051 1100 ENSP00000469759/1-679 SRPEYYC ENSBTAP00000009238/1-641 SGSEYYC ENSTTRP00000004359/1-555 SRAEYYC BACU014409/1-1043 ------- bmy_07173T0/1-460 -------