KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:37:47 2014  Check: 00 ..

 Name: ENSP00000363079/1-248     Len:    254  Check:  3156  Weight:  1.00
 Name: ENSBTAP00000009270/1-249  Len:    254  Check:  4979  Weight:  1.00
 Name: bmy_12476T0/1-227         Len:    254  Check:  6339  Weight:  1.00
 Name: ENSTTRP00000007157/1-246  Len:    254  Check:  1944  Weight:  1.00

//


                          1                                                   50
ENSP00000363079/1-248     MSLFPSLPLL LLSMV----A ASY--SETVT CEDAQKTCPA VIACSSPGIN 
ENSBTAP00000009270/1-249  MSLFTSLPFL LLTAV----T ASCADTETEN CENIRKTCP- VIACGPPGIN 
bmy_12476T0/1-227         -MDCPDIRMG CRWQMGPNGK ATC--TETEN CENVQKTCP- VIACGSPGIN 
ENSTTRP00000007157/1-246  MSLFPSLPLL LLIVV----T ALC--TETEN CENVQKTCP- VIACGSPGIN 


                          51                                                 100
ENSP00000363079/1-248     GFPGKDGRDG TKGEKGEPGQ GLRGLQGPPG KLGPPGNPGP SGSPGPKGQK 
ENSBTAP00000009270/1-249  GIPGKDGRDG AKGEKGEPGQ GLRGSQGPPG KMGPQGTPGI PGIPGPIGQK 
bmy_12476T0/1-227         GLPGNNAHDG AKGEKGEPGQ GLRGFQGPPG KVGPQGMPGP PGLPGQVGQK 
ENSTTRP00000007157/1-246  GLPGKDRHYG AKGEKGEPGQ GLRGFQGPPR KVGPQGMPGP PGLPGQVGQK 


                          101                                                150
ENSP00000363079/1-248     GDPGKSPDGD SSLAASERKA LQTEMARIKK WLTFSLGKQV GNKFFLTNGE 
ENSBTAP00000009270/1-249  GDPGENMGDY IRLATSERAT LQSELNQIKN WLIFSLGKRV GKKAFFTNGK 
bmy_12476T0/1-227         GDPGDDLG-- ---------- --------KA WLLQK--EQL CDQNW-SSSK 
ENSTTRP00000007157/1-246  GDPGDDLGNY ISQATSERAA LRSELDQLKK WLIFS-GKKV GKKFYFTNGE 


                          151                                                200
ENSP00000363079/1-248     IMTFEKVKAL CVKFQASVAT PRNAAENGAI QNLIKEEAFL GITDEKTEGQ 
ENSBTAP00000009270/1-249  KMPFNEVKTL CAQFQGRVAT PMNAEENRAL KDLVTEEAFL GITDQETEGK 
bmy_12476T0/1-227         NMTFDEVKTP CAQFQASVAI PTNADENKAI QDIASGGAFL GITNEKTDGQ 
ENSTTRP00000007157/1-246  KMTFDEVKTL CAQFQASVAI PTNAEENKAI QDTASGGAFL GITYEETDGQ 


                          201                                                250
ENSP00000363079/1-248     FVDLTGNRLT YTNWNEGEPN NAGSDEDCVL LLKNGQWNDV PCSTSHLAVC 
ENSBTAP00000009270/1-249  FVDLTGKGVT YQNWNDGEPN NASPGEHCVT LLSDGTWNDI ACSASFLTVC 
bmy_12476T0/1-227         SVDLTGKRVT YQNWHDGERN NAGSEEHCVT LLVDGTWNDI TCSASFLAVC 
ENSTTRP00000007157/1-246  SVDLTGKRVT YQNWHDGKPN NAGSEEHCVT LLVDGTWNDI TCSASFLAVC 


                          251                                                300
ENSP00000363079/1-248     EFPI 
ENSBTAP00000009270/1-249  EFSL 
bmy_12476T0/1-227         EYSA 
ENSTTRP00000007157/1-246  KYSA