KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:37:49 2014 Check: 00 .. Name: ENSP00000282007/1-1564 Len: 1680 Check: 19 Weight: 1.00 Name: ENSBTAP00000009295/1-1652 Len: 1680 Check: 8163 Weight: 1.00 Name: bmy_22004T0/1-1332 Len: 1680 Check: 6181 Weight: 1.00 Name: ENSTTRP00000003386/1-1647 Len: 1680 Check: 3875 Weight: 1.00 // 1 50 ENSP00000282007/1-1564 MSKIRRKVTV ENTKTISDST SRRPSVFERL GPSTGSTAET QCRNWLKTGN ENSBTAP00000009295/1-1652 MSKIRRKVTV ENTKTISDST SRRPSVFERL GPSTGSTAET QCRNWLKTGN bmy_22004T0/1-1332 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003386/1-1647 MSKIRRKVTV ENTKTISDST SRRPSVFERL GPSTGSTAET QCRNWLKTGN 51 100 ENSP00000282007/1-1564 CLYGNTCRFV HGPSPRGKGY SSNYRRSPER PTGDLRERMK NKRQDVDTEP ENSBTAP00000009295/1-1652 CLYGNTCRFV HGPSPRGKGY SSNYRRSPER PTGDLRERMK NKRQDVDSES bmy_22004T0/1-1332 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003386/1-1647 CLYGNTCRFV HGPSPRGKGY SSNYRRSPER PTGDLRERMK NKRQDVDTES 101 150 ENSP00000282007/1-1564 QKRNTEESSS PVRKESSRGR HREKEDIKIT KERTPESEEE NVEWETNRDD ENSBTAP00000009295/1-1652 QKRNTEESSS PVRKESSRGR HREKEDIKIT KERTPESEEE NVEWETNRDD bmy_22004T0/1-1332 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003386/1-1647 QKRNTEESSS PVRKESSRGR HREKEDIKIT KERTPESEEE NVEWETNRDX 151 200 ENSP00000282007/1-1564 SDNGDINYDY VHELSLEMKR QKIQRELMKL EQENMEKREE IIIKKEVSPE ENSBTAP00000009295/1-1652 SDNGDINYDY VHELSLEMKR QKIQRELMKL EQENMEKREE IIIKKEVSPE bmy_22004T0/1-1332 ---------- -------MKR QKIQRELMKL EQENMEKREE IIIKKEVSPE ENSTTRP00000003386/1-1647 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVSPE 201 250 ENSP00000282007/1-1564 VVRSKLSPSP SLRKSSKSPK RKSSPKSSSA -SKKDRKTSA VSSPLLDQQR ENSBTAP00000009295/1-1652 VVRSKLSPSP SLRKSSKSPK RKSSPKSSSS TSKKDRKTTA VSSPLLDQQR bmy_22004T0/1-1332 VVRSKLSPSP SLRKSSKSPK RKSSPKSSSS TSKKDRKTTA VSSPLLDQQR ENSTTRP00000003386/1-1647 VVRSKLSPSP SLRKSSKSPK RKSSPKSSSS TSKKDRKTTA VSSPLLDQQR 251 300 ENSP00000282007/1-1564 NSKTNQSKKK GPRTPSPPPP IPEDIALGKK YKEKYKVKDR IEEKTRDGKD ENSBTAP00000009295/1-1652 NSKSNQSKKK GPRTPSPPPP IQEDIALGKK YKEKYKLKDR IEEKPRDGKD bmy_22004T0/1-1332 NSKSNQSKKK GPRTPSPPPP IQEDIALGKK YKEKYKVKDR IEEKPRDGKD ENSTTRP00000003386/1-1647 NSKSNQSKKK GPRTPSPPPP IQEDIALGKK YKEKYKVKDR IEEKPRDGKD 301 350 ENSP00000282007/1-1564 RGRDFERQRE KRDKPRSTSP AGQHHSPISS RHHSSSSQSG SSIQRHSPSP ENSBTAP00000009295/1-1652 RGRDFERQRE KRDKPRSTSP AGQHHSPISS RHHSSSSQSG SSIQRHSPSP bmy_22004T0/1-1332 RGRDFERQRE KRDKPRSTSP AGQHHSPISS RHHSSSSQSG SSIQRHSPSP ENSTTRP00000003386/1-1647 RGRDFERQRE KRDKPRSTSP AGQHHSPISS RHHSSSSQSG SSIQRHSPSP 351 400 ENSP00000282007/1-1564 RRKRTPSPSY QRTLTPPLRR SASPYPSHSL SSPQRKQSPP RHRSPMREKG ENSBTAP00000009295/1-1652 RRKRTPSPSY QRTITPPLRR SASPYPSHSL ASPQRKQSPP RHRSPVREKG bmy_22004T0/1-1332 RRKRTPSPSY QRTVTPPLRR SASPYPSHSL SSPQRKQSPP RHRSPMREKG ENSTTRP00000003386/1-1647 RRKRTPSPSY QRTVTPPLRR SASPYPSHSL SSPQRKQSPP RHRSPMREKG 401 450 ENSP00000282007/1-1564 RHDHERTSQS HDRRHERRED TRGKRDREKD SREEREYEQD QSSSRDHRDD ENSBTAP00000009295/1-1652 RHDHERASQS HDRRHERREE TRGKRDREKD TREEREYEQD QSSSRDHRDD bmy_22004T0/1-1332 RHDHERTSQS HDRRHERREE TRGKRDREKD TREEREYEQD QSSSRDHRDD ENSTTRP00000003386/1-1647 RHDHERTSQS HDRRHERREE TRGKRDREKD TREEREYEQD QSSSRDHRDD 451 500 ENSP00000282007/1-1564 REPRDGRDRR DARDTRDRRE LRDSRDMRDS REMRDYSRDT KESRDPRDSR ENSBTAP00000009295/1-1652 REPRDGRDRR DARDTRDRRE LRDSRDVRDS REMRDYSRDN KESRDPRDSR bmy_22004T0/1-1332 REPRDGRDRR DARDTRDRRE LRDSRDIRDS REMRDYSRDN KESRDPRDSR ENSTTRP00000003386/1-1647 REPRDGRDRR DARDTRDRRE LRDSRDIRDS REMRDYSRDN KESRDPRDSR 501 550 ENSP00000282007/1-1564 STRDAHDYRD REGRDTHRKE DTYPEESRSY GRNHLREESS RTEIRNESRN ENSBTAP00000009295/1-1652 STRDAHDYRD RESRDAHRKE DAYQEESRSY GRNHLREESS RAEIRNDSRN bmy_22004T0/1-1332 STRDAHDYRD RESRDAHRKE DAYQEESRSY GRNHLREESS RTEIRNESRN ENSTTRP00000003386/1-1647 STRDAHDYRD RESRDAHRKE DAYQEESRSY GRNHLREESS RTEIRNESRN 551 600 ENSP00000282007/1-1564 ESRSEIRNDR MGRSRGRVPE LPEKGSRGSR GSQIDSHSSN SNYHDSWETR ENSBTAP00000009295/1-1652 ESRSEIRNDR MGRSRGRAPE MPEKGSRGTR GSQIDSHSSS SNYHDSWETR bmy_22004T0/1-1332 ESRSEIRNDR MGRSRGRGPE LPEKGSRGTR GSQIDSHSST SNYHDSWETR ENSTTRP00000003386/1-1647 ESRSEIRNDR MGRSRGRGPE LPEKGSRGTR GSQIDSHSST SNYHDSWETR 601 650 ENSP00000282007/1-1564 SSYPERDRYP ERDNRDQARD SSFERRHGER DRRDNRERD- -------QRP ENSBTAP00000009295/1-1652 SSYPERDRYP ERDNREQARD SSFERRHGER DRRDNRERD- -------QRP bmy_22004T0/1-1332 SSYPERDRYP ERDNRDQARD SSFERRHGER DRRDNRERAP IFYTSCCPYP ENSTTRP00000003386/1-1647 SSYPERDRYP ERDNRDQARD SSFERRHGER DRRDNRERD- -------QRP 651 700 ENSP00000282007/1-1564 SSPIRHQGRN DELERDERRE ERRVDRVDDR RDERARERDR ERERDRERER ENSBTAP00000009295/1-1652 SSPIRHQGRN DELERDERRE ERRVDRTDDR RDERARERDR ERERERERER bmy_22004T0/1-1332 LPPVFS---- ---------- ---------- ---------- ---------- ENSTTRP00000003386/1-1647 SSPIRHQGRN DEIERDERRE ERRVDRTDDR RDERPRERDR ERERERERER 701 750 ENSP00000282007/1-1564 ERERERDRER EKERELER-E RARERERERE KERDRERDRD RDHDRERERE ENSBTAP00000009295/1-1652 ERERDREREK ERELERERAA RERERERERE KERDRERERD REHDRERERE bmy_22004T0/1-1332 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003386/1-1647 ERERDREREK ERELERER-A RERERERERE KERDRERERD RDHDRERERE 751 800 ENSP00000282007/1-1564 RERDREKERE REREERERER ERERERERER ERERERARER DKERERQRDW ENSBTAP00000009295/1-1652 REREREKERE RERE--ERER ERERERERER ERERERARER ERERERQREW bmy_22004T0/1-1332 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003386/1-1647 RERDREKERE RERE----ER ERERERERER ERERERARER EKERERQREW 801 850 ENSP00000282007/1-1564 EDKDKGRDDR REKREEIRED RNPRDGHDE- RKSKKRYRNE GSPSPRQSPK ENSBTAP00000009295/1-1652 EDKEKAREDR REKREDLRED RNPRDGHEE- RKSKKRYRNE GSPSPRQSPK bmy_22004T0/1-1332 ---------- ---------- -GPAGGTEKI RGEGKRYRNE GSPSPRQSPK ENSTTRP00000003386/1-1647 EDKDKGREDR REKREDIRED RNPRDGHEE- RKSKKRYRNE GSPSPRQSPK 851 900 ENSP00000282007/1-1564 RRREHSPDSD AYNSGDDKNE KHRLLSQVVR PQESRSLSPS HLTEDRQGRW ENSBTAP00000009295/1-1652 RRREHSPDSD AYNSGDDKNE KHRLLSQVVR PQESRSLSPS HLTEDRQGRW bmy_22004T0/1-1332 RRREHSPDSD AYNSGDDKNE KHRLLSQVVR PQESRSLSPS HLTEDRQGRW ENSTTRP00000003386/1-1647 RRREHSPDSD AYNSGDDKNE KHRLLSQVVR PQESRSLSPS HLTEDRQGRW 901 950 ENSP00000282007/1-1564 KEEDRKPERK ESSRRYEEQE LKEKVSSVDK QREQTEILES SRMRAQDIIG ENSBTAP00000009295/1-1652 REDDRKPERK ESSRRYEEQD FKEKVSSVDK QREQTEITES SRTRSQDLAG bmy_22004T0/1-1332 KEEDRKPERK ESSRRYEEQE FKEKVSSVDK QREQTEIMES SRTRSQDMIG ENSTTRP00000003386/1-1647 KEEDRKPERK ESSRRYEEQE FKEKVSSVDK QREQTEIMES SRTRSQDMIG 951 1000 ENSP00000282007/1-1564 HHQSEDRETS DRAHDENKKK AKIQKKPIKK KKEDDVGIER GNIETTSEDG ENSBTAP00000009295/1-1652 HHPSEDRDTS DGAYEESKRK AKIQKKPIKR KKDDDVGMGR GNTEIASEDG bmy_22004T0/1-1332 HHPSEDRDTS DRAHDENKKK AKIQKKPIKK KKEDDVGMDR GNTETTSEDG ENSTTRP00000003386/1-1647 HHPCEDRDTS DRAHDENKKK AKIQKKPIKK KKDDDVGMDR GNTETTSDDG 1001 1050 ENSP00000282007/1-1564 QVFSPKKGQK KKSIEKKRKK SKGDSDISDE EAAQQSKKKR GPRTPPITTK ENSBTAP00000009295/1-1652 QVFSPKKGQK KKSVEKKRKR SRGDSDISDE ETVQQSKKKR GPRTPPITAK bmy_22004T0/1-1332 QVFSPKKGQK KKSVEKKRKR SKGDSDISDE EAVQQSKKKR GPRTPPITTK ENSTTRP00000003386/1-1647 QVFSPKKGQK KKTVEKKRKR SKGDSDISDE EAVQQSKKKR GPRTPPITAK 1051 1100 ENSP00000282007/1-1564 EELVEMCNGK NGILEDSQKK EDTAFSDWSD EDVPDRTEVT EAEHTATATT ENSBTAP00000009295/1-1652 EEPADMPSDK DGALEDPQKK EDTAFSDWSD EDVPDRTDLT EPEHAATATT bmy_22004T0/1-1332 EELVEMPNDK DGTMEDPQKK EDTAFSDWSD EDVPDRTEVT EPEHAATAAT ENSTTRP00000003386/1-1647 EELVEMHNDK DGTMEDPQKK EDTAFSDWSD EDVPDRAEVT EAEHAATAAT 1101 1150 ENSP00000282007/1-1564 PGSTPSPLSS LLPPPPPVAT ATATTVPATL AATTAAAATS FSTSAITIST ENSBTAP00000009295/1-1652 PGRTPSP-SS LPPPPPP--- ---------L AATAATPATA FSTSTTTIST bmy_22004T0/1-1332 PGRTPSP-SS LPPPPPP--- ---------L ATTTTPAATS FNTLTTTIST ENSTTRP00000003386/1-1647 PGRTPSP-SS LPPPPPP--- ---------L AMTTTPAATT FNTLTATIST 1151 1200 ENSP00000282007/1-1564 SATPTNTTNN TFANEDSHRK CHRTRVEKVE TPHVTIEDAQ HRKPMDQKRS ENSBTAP00000009295/1-1652 SALPTTNT-- SFTSEDSHRK CHRTRAEKVE APHVTIEDAP HRKPVDQKRS bmy_22004T0/1-1332 SSTPANTT-N TFTNEDSHRK CHRTRVEKVE APHVTIEDAP HRKPVDQKRS ENSTTRP00000003386/1-1647 SSTPANTT-N TFTSEDSHRK CHRTRVEKVE APHVTIEDAP HRKPVDQKRS 1201 1250 ENSP00000282007/1-1564 SSLGSNRSNR SHTSGRLRSP SNDSAHRSGD DQSGRKRVLH SGSRDREKTK ENSBTAP00000009295/1-1652 SSLGSNRSNR SHTSGRLRSP SNDSAHRSGD DQNGRKRVLH SGSRDREKTK bmy_22004T0/1-1332 SSLGSNRSNR SHTSGRLRSP SNDSAHRSGD DQSGRKRVLH SGSRDREKTK ENSTTRP00000003386/1-1647 SSLGSNRSNR SHTSGRLRSP SNDSAHRSGD DQSGRKRVLH SGSRDREKTK 1251 1300 ENSP00000282007/1-1564 SLEITGERKS RIDQLKRGEP SRSTSSDRQD SRSHSSRRSS PESDRQVHSR ENSBTAP00000009295/1-1652 SLEITGERKS RIDQLKRGEP SRSTSSDRQD SRSHSSRRSS PESDRQVHSR bmy_22004T0/1-1332 SLEITGERKS RIDQLKRGEP SRSTSSDRQD SRSHSSRRSS PESDRQVHSR ENSTTRP00000003386/1-1647 SLEITGERKS RIDQLKRGEP SRSTSSDRQD SRSHSSRRSS PESDRQVHSR 1301 1350 ENSP00000282007/1-1564 SGSFDSRDRL QERDRYEHDR ERERERRDTR QREWDRDADK DWPRNRDRDR ENSBTAP00000009295/1-1652 SGSFDSRERL QERDRYEHER ERERERRDVR QRDWERDADK DWPRNRDRDR bmy_22004T0/1-1332 SGSFDSRDRL QERDRYDHER ERERERRDAR QREWERDADK DWPRNRDRDR ENSTTRP00000003386/1-1647 SGSFDSRDRL QDRDRYEHER ERERERRDTR QRDWERDADK DWPRNRDRDR 1351 1400 ENSP00000282007/1-1564 LRERERERER DKRRDLDRER ERLISDSVER DRDRDRDRTF ESSQIESVKR ENSBTAP00000009295/1-1652 L--RERERER DKRRDLDRER ERLLSDALER DRERDRDRTF EGSQVESVKR bmy_22004T0/1-1332 L--RERERER DKRRDLDRER ERLISDSMER DRDRDRDRSF ESPQIESIKR ENSTTRP00000003386/1-1647 L--RERERER DKRRDLDRER ERLISDSMER DRDRDRT--F ESPQIESVKR 1401 1450 ENSP00000282007/1-1564 CEAKLEGEHE RDLESTSRDS LALDKERMDK DLGSVQGFEE TNKSERTESL ENSBTAP00000009295/1-1652 SEVKLESEHD RDLEGSSRDS GALDKERLDK DLGSVQGFED TSRAERTESV bmy_22004T0/1-1332 SEAKLESEHE RDLEGTSRDS LALDKERMDK DLGSLQGFED TNKAERTESM ENSTTRP00000003386/1-1647 SEAKLESEHE RDLEGTFRDS LALDKERMDK DLGSLQGFED TNKAERTESM 1451 1500 ENSP00000282007/1-1564 EAGDDESKLD DAHSLGSGAG EGYEPISDDE LDEILAGDAE KREDQQDEEK ENSBTAP00000009295/1-1652 EAGDDESKLD DAHSLGSGAG EGYEPISDDE LDEILAGDAE KREDQQDEEK bmy_22004T0/1-1332 EAGDDESKLD DVHSLGSGAG EGYEPISDDE LDEILAGDAE KREDQQDEEK ENSTTRP00000003386/1-1647 E-GDDESKLD DVHSLGSGAG EGYEPISDDE LDEILAGDAE KREDQQDEEK 1501 1550 ENSP00000282007/1-1564 MPDPLDVIDV DWSGLMPKHP KEPREPGAAL LKFTPGAVML RVGISKKLAG ENSBTAP00000009295/1-1652 MPDPLDVIDV DWSGLMPKHP KEPREPGAAL LKFTPGAVML RVGISKKLAG bmy_22004T0/1-1332 MPDPLDVIDV DWSGLMPKHP KEPREPGAAL LKFTPGAVML RIGISKKLAG ENSTTRP00000003386/1-1647 MPDPLDVIDV DWSGLMPKHP KEPREPGAAL LKFTPGAIML RIGISKKLAG 1551 1600 ENSP00000282007/1-1564 SELFAKVKET CQRLLEKPKG SFILL----- ---------- ---------- ENSBTAP00000009295/1-1652 PELFTKVKET CQRLLEKPKD TDSLFEHELG ALNMAALLRK EERANLLSNL bmy_22004T0/1-1332 SELFTKVRET CQRLLEKPKD AENLFEHELG ALNMAALLRK EERASLLSNL ENSTTRP00000003386/1-1647 SELFTKVKET CQRLLEKPKD ADNLFEHELG ALNMAALLRK EERASLLSNL 1601 1650 ENSP00000282007/1-1564 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009295/1-1652 GPCCKALCFR RDSAIRKQLV KNEKGTVKQA YTNAPVVDNE LLRLSLRLFK bmy_22004T0/1-1332 GPCCKALCFR RDSAIRKQLV KNEKGTVKQA YTNAPMVDNE LLRLSLRLFK ENSTTRP00000003386/1-1647 GPCCKALCFR RDSAIRKQLV KNEKGTVKQA YTNAPVVDNE LLRLSLRLFK 1651 1700 ENSP00000282007/1-1564 ---------- ---------- ---------- ENSBTAP00000009295/1-1652 RKTMCQAPGP EKTEDDKLSQ SGIQQELCVS bmy_22004T0/1-1332 RKTTCHASGP EKTEDNKLSQ SSIQQELCVS ENSTTRP00000003386/1-1647 RKTTCHTSGP EKTEDNKLSQ SSIQQELCVS