KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:00 2014 Check: 00 .. Name: ENSP00000380307/1-628 Len: 784 Check: 6435 Weight: 1.00 Name: ENSBTAP00000009340/1-628 Len: 784 Check: 8535 Weight: 1.00 Name: BACU008660/1-548 Len: 784 Check: 667 Weight: 1.00 Name: bmy_13907T0/1-633 Len: 784 Check: 9584 Weight: 1.00 Name: ENSTTRP00000010113/1-488 Len: 784 Check: 2876 Weight: 1.00 // 1 50 ENSP00000380307/1-628 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009340/1-628 ---------- ---------- ---------- ---------- ---------- BACU008660/1-548 MLLGKSPLQL SQGPAACAEP ADKLRPNTEE AEEVMSKASP GSQAPSRLLQ bmy_13907T0/1-633 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010113/1-488 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000380307/1-628 ---------- -------MSP GGKFDFDDGG CYVGGWEAGR AHGYGVCTGP ENSBTAP00000009340/1-628 ---------- -------MSP GGKFDFDDGG CYVGGWEAGR AHGYGVCTGP BACU008660/1-548 PQDALSHRGA EAAPTTCMSP GGKFDFDDGG CYVGGWEAGR AHGYGVCTGP bmy_13907T0/1-633 ---------- -------MSP GGKFDFDDGG CYVGGWEAGR AHGYGVCTGP ENSTTRP00000010113/1-488 ---------- ------MHVP RGKFDFDDGG CYVGGWEAGR AHGYGVCTGP 101 150 ENSP00000380307/1-628 GAQGEYSGCW AHGFESLGVF TGPGGHSYQG HWQQGKREGL GVERKSRWTY ENSBTAP00000009340/1-628 GAQGEYSGCW AHGFESLGVF TGPGGHSYQG HWQQGKREGL GVERKSRWTY BACU008660/1-548 GAQGEYSGCW AQGFESLGVF TGPGGHSYQG HWQQGKREGL GVERKSRWTY bmy_13907T0/1-633 GAQGEYSGCW AQGFESLGVF TGPGGHSYQG HWQQGKREGL GVERKSRWTY ENSTTRP00000010113/1-488 GAQGEYSGCW AQGFESLGVF TGPGGHSYQG HWQQGKREGL GVERKSRWTY 151 200 ENSP00000380307/1-628 RGEWLGGLKG RSGVWESVSG LRYAGLWKDG FQDGYGTETY SDGGTYQGQW ENSBTAP00000009340/1-628 RGEWLGGLKG RSGVWESVSG LRYAGLWKDG FQDGYGTETY SDGGTYQGQW BACU008660/1-548 RGEWLGGLKG RSGVWESVSG LRYAGLWKDG FQDGYGTETY SDGGTYQGQW bmy_13907T0/1-633 RGEWLGGLKG RSGVWESVSG LRYAGLWKDG FQDGYGTETY SDGGTYQGQW ENSTTRP00000010113/1-488 RGEWLGGLKG RSGVWESVSG LRYAGLWKDG FQDGYGTETY SDGGTYQGQW 201 250 ENSP00000380307/1-628 QAGKRHGYGV RQSVPYHQAA LLRSPRRTSL DSGHSDPPTP PPPLPLPGDE ENSBTAP00000009340/1-628 QAGKRHGYGV RQSVPYHQAA LLRSPRRTSL DSGHSDPPTP PPPLPLPGDE BACU008660/1-548 QAGKRHGYGV RQ-------- ---------- ---------- ---------- bmy_13907T0/1-633 QAGKRHGYGV RQSVPYHQAA LLRSPRRTSL DSGHSDPPTP PPPLPLPGDE ENSTTRP00000010113/1-488 QAGKRHGYGV RQSVPYHQAA LLRSPRRTSL DSGHSDPPTP PPPLPLTGDE 251 300 ENSP00000380307/1-628 GGSPASGSRG GFVLAGPGDA DGASSRKRTP AAGGFFRRSL LLSGLRAGGR ENSBTAP00000009340/1-628 GGSPASGSRG GFVLAGPGDG DGASSRKRTP AAGGFFRRSL LLSGLRAGGR BACU008660/1-548 ---------- ---------- ---------- ---------- ---------R bmy_13907T0/1-633 GGSPASGSRG GFVLAGPGDA DGAACRKRTP AAGGFFRRSL LLSGLRAGGR ENSTTRP00000010113/1-488 GGSPASGSRG GFVLAGPGDA DSAACRKRTP AAGGFFRRSL LLSGLRAGGR 301 350 ENSP00000380307/1-628 RSSLGSKRGS LRSEVSSEVG STGPPGSEAS GPPAAAPPAL IEGSATEVYA ENSBTAP00000009340/1-628 RSSLGSKRGS LRSEVSSEVG STGPPGSEAS GPPAPAPPAL IEGSATEVYA BACU008660/1-548 QQTL------ ---------- ---------- ---------- ---------- bmy_13907T0/1-633 RSSLGSKRGS LRSEVSSEVG STGPPGSEAS GPPAPAPPAL IEGSATEVYA ENSTTRP00000010113/1-488 RSSLGSKRGS L--------- ---------- ---------- ---------- 351 400 ENSP00000380307/1-628 GEWRADRRSG FGVSQRSNGL RYEGEWLGNR RHGYGRTTRP DGSREEGKYK ENSBTAP00000009340/1-628 GEWRADRRSG YGVSQRSNGL RYEGEWLGNR RHGYGRTTRP DGSREEGKYK BACU008660/1-548 ---------- ---------- ---------- ---------- ---------- bmy_13907T0/1-633 GEWRADRRSG YGVSQRSNGL RYEGEWLGNR RHGYGRTTRP DGSREEGKYK ENSTTRP00000010113/1-488 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000380307/1-628 RNRLVHGGRV RSLLPLALRR GKVKEKVDRA VEGARRAVSA ARQRQEIAAA ENSBTAP00000009340/1-628 RNRLVHGGRV RSLLPLALRR GKVKEKVDRA VEGARRAVSA ARQRQEIAAA BACU008660/1-548 ---------- ---------- ---------- ---------- ---------- bmy_13907T0/1-633 RNRLVHGGRV RSLLPLALRR GKVKEKVDRA VEGARRAVSA ARQRQEIAAA ENSTTRP00000010113/1-488 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000380307/1-628 RAADALLKAV AASSVAEKAV EAARMAKLIA QDLQPMLE-- ---APGRRPR ENSBTAP00000009340/1-628 RAADALLKAV AASSVAEKAV EAARMAKLIA QDLQPMLE-- ---APGRRPR BACU008660/1-548 ---XXLLKAV AASSVAEKAV EAARMAKLIA QDLQPMLEAP AIPAPGRRPR bmy_13907T0/1-633 RAADALLKAV AASSVAEKAV EAARMAKLIA QDLQPMLEAP AIPAPGRRPR ENSTTRP00000010113/1-488 -AADALLKAV AASSVAEKAV EAARMAKLIA QDLQPMLE-- ---APGRRPR 501 550 ENSP00000380307/1-628 QDSEGSDTEP LDEDSPGVYE NGLTPSEGSP ELPSSPASSR QPWRPPACRS ENSBTAP00000009340/1-628 QDSEGSDTEP LDEDSPGVYE NGLTPSEGSP ELPSSPASSH QPWRPPTCRS BACU008660/1-548 QDSEGSDTEP LDEDSPGVYE NGLTPSEGSP ELPSSPASSR QPWRPTACRS bmy_13907T0/1-633 QDSEGSDTEP LDEDSPGVYE NGLTPSEGSP ELPSSPASSR QPWRPTACRS ENSTTRP00000010113/1-488 QDS-GSDTEP LDEDSPGVYE NGLTPSEGSP ELPSSPASSR QPWRPPACRS 551 600 ENSP00000380307/1-628 PLPPGGDQGP FSSPKAWPEE WGGAGAQAEE LAGYEAEDEA GMQGPGPRDG ENSBTAP00000009340/1-628 PLPSGGDRGP FSSPKAWPEE WGGPGEQAEE LAGYEAEDEA GMQGPEPRDG BACU008660/1-548 PLPSGGDRGP FSSPKAWPEE WGGPGEQAEE LAGYEAEDEA GLQGPEPRDG bmy_13907T0/1-633 PLPSGGDRGP FSSPKAWPEE WGGPGEQAEE LAGYEAEDEA GLQGPEPRDG ENSTTRP00000010113/1-488 PLPSGGDRGP FSSPKAWPEE WGGPGEQAEE LAGYEAEDEA GLQGPEPRDG 601 650 ENSP00000380307/1-628 SPLLGGCSDS SGSLREEEGE DEEPLPPLRA PAGTEPEPIA MLVLRGSSSR ENSBTAP00000009340/1-628 SPLLGGCSDS SGSLREEEGE DEEPFPQLST PGGSEPEPAA LPVLRGLSSR BACU008660/1-548 SPLLGGCSDS SGSLREEEGE DEEPLLQMRT PGRSEPEPTA LPVLRGLSSR bmy_13907T0/1-633 SPLLGGCSDS SGSLREEEGE DEEPLLQMRT PGRSEPEPTA LPVLRGLSSR ENSTTRP00000010113/1-488 SPLLGGCSDS SGSLREEEGE DEEPLLQMRT PGRSEPEPTA LPVLRGLSSR 651 700 ENSP00000380307/1-628 GPDAGCLTEE LGEPAATERP AQPGAANPLV VGAVALLDLS LAFL------ ENSBTAP00000009340/1-628 GPEAGCLVEE AEEAAATERP AQPGAANPLV VGAVALLDLS LAFL------ BACU008660/1-548 SPEAGCLMEE AEEAAASERP AQPGAANPLV VGAVALLDLS LAFLXXXXXX bmy_13907T0/1-633 GPEAGCLMEE AEEAAASERP AQPGAANPLV VGAVALLDLS LAFL------ ENSTTRP00000010113/1-488 GPEAGCLMEE AEEAAASERP AQPGAANPLV VGAVALLDLS LAFL------ 701 750 ENSP00000380307/1-628 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009340/1-628 ---------- ---------- ---------- ---------- ---------- BACU008660/1-548 XXXXXPSSGF GCCLFTPLTC LFLFSSSWLF FLLSFFLFSL PFLFCPPLVF bmy_13907T0/1-633 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010113/1-488 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000380307/1-628 -----FSQLL T--------- ---------- ---- ENSBTAP00000009340/1-628 -----FSQLL T--------- ---------- ---- BACU008660/1-548 SLVFFFPSLL SDSFLLALSL SSSLPSPPTP SLSL bmy_13907T0/1-633 -----FSQLL T--------- ---------- ---- ENSTTRP00000010113/1-488 -----FSQLL T--------- ---------- ----