KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:00 2014 Check: 00 .. Name: ENSP00000291576/1-919 Len: 1013 Check: 8085 Weight: 1.00 Name: ENSBTAP00000009343/1-919 Len: 1013 Check: 8085 Weight: 1.00 Name: ENSTTRP00000006368/1-852 Len: 1013 Check: 6808 Weight: 1.00 Name: bmy_21206T0/1-1007 Len: 1013 Check: 2809 Weight: 1.00 Name: BACU004369/1-924 Len: 1013 Check: 9910 Weight: 1.00 // 1 50 ENSP00000291576/1-919 MKFAYRFSNL LGTVYRRGNL NFTCDGNSVI SPVGNRVTVF DLKN------ ENSBTAP00000009343/1-919 MKFAYRFSNL LGTVYRCGNL NFTCDGNSVI SPVGNRVTVF DLKN------ ENSTTRP00000006368/1-852 MKFAYRFSNL LGTVYRCGNL NFTCDGNSVI SPVGNRVTVF DLKN------ bmy_21206T0/1-1007 MKFAYRFSNL LGTVYRCGNL NFTCDGNSVI SPVGNRVTVF DLKNTPVTIK BACU004369/1-924 MKFAYRFSNL LGTVYRCGNL NFTCDGNSVI SPVGNRVTVF DLKN------ 51 100 ENSP00000291576/1-919 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009343/1-919 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006368/1-852 ---------- ---------- ---------- ---------- ---------- bmy_21206T0/1-1007 QAMETEPPDR GLRDLHSADG SAVGLAVGIP GGAVEESGAL AGLGGGETGA BACU004369/1-924 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000291576/1-919 ---------- ---------- ---------- -NKSDTLPLA TRYNVKCVGL ENSBTAP00000009343/1-919 ---------- ---------- ---------- -NKSNTLPLA TRYNIKCVGL ENSTTRP00000006368/1-852 ---------- ---------- ---------- -NKSDTLPLA TRYNIKCVGL bmy_21206T0/1-1007 GWVLLVQAGP VPHPRPMTPE QQRSSGFLSP SNKSDTLPLA TRYNIRCVGL BACU004369/1-924 ---------- ---------- ---------- -NKSDTLPLA TRYNIKCVGL 151 200 ENSP00000291576/1-919 SPDGRLAIIV DEGGDALLVS LVCRSVLHHF HFKGSVHSVS FSPDGRKFVV ENSBTAP00000009343/1-919 SPDGRLAIIV DEGGDALLVS LVCRSVLHHF HFKGAVHSVS FSPDGRKFVV ENSTTRP00000006368/1-852 SPDGRLAIIV DEGGNALLAS LVCRAVLHHF HFKGAVHSVS FSPDGRKFVI bmy_21206T0/1-1007 SPDGRLAIIV DEGGDALLAS LVCRAVLHRF HFKGAVHSVS FSPDGRKFVV BACU004369/1-924 SPDGRLAIIV DEGGDALLAS LVCRAVLHRF HFKGAVHSVS FSPDGRKFVV 201 250 ENSP00000291576/1-919 TKGNIAQMYH APGKKREFNA FVLDKTYFGP YDETTCIDWT DDSRCFVVGS ENSBTAP00000009343/1-919 TKGNIAQVYH APGRKREFNA FVLDKTYFGP YDETTCIDWT DDSRCFAVGS ENSTTRP00000006368/1-852 TKGNLAQMYH APGRKREFNA FVLDKTYFGP YDETTCIDWT DDSRCFAVGS bmy_21206T0/1-1007 TKGNLAQMYH APGRKREFNA FVLDKTYFGP YDETTCIDWT DDSRCFAVGS BACU004369/1-924 TKGNLAQMYH APGRKREFNA FVLDKTYFGP YDETTCIDWT DDSRCFAVGS 251 300 ENSP00000291576/1-919 KDMSTWVFGA ERWDNLIYYA LGGHKDAIVA CFFESNSLDL YSLSQDGVLC ENSBTAP00000009343/1-919 RDMSTWVFGA ERWDNLIYYA LGGHKDAIVA CFFEASSLDL YTLSQDGALC ENSTTRP00000006368/1-852 KDMSTWVFGA ERWDNLIYYA LGGHKDAIVG CFFESSSLDL YTLSQDGALC bmy_21206T0/1-1007 KDMSTWVFGA ERWDNLIYYA LGGHKDAIVG CFFESSSLDL YTLSQDGALC BACU004369/1-924 KDTSTWVFGA ERWDNLIYYA LGGHKDAIVG CFFESSSLDL YTLSQDGALC 301 350 ENSP00000291576/1-919 MWQCDTPPEG LRLKPPAGWK ADLLQR---- EEEEEEEEDQ EGDRETTIRG ENSBTAP00000009343/1-919 VWQCDTLPEG LRLKAPTGWK ADLLQR---- --EEEQEEEE GAESETTIRG ENSTTRP00000006368/1-852 VWQCDTPPEG LRLKAPAGWK ADLLQR---- --------ED GAERETTVHG bmy_21206T0/1-1007 VWQCDTPPEG LRLKAPAGWK ADLLQR---- EDEDEDEDGD GAEGETTIRG BACU004369/1-924 VWQCDTPPEG LRLKAPAGWK ADLLQREGED EDEDEDEDED EAERETTIRG 351 400 ENSP00000291576/1-919 KATPAEEEKT GKVKYSRLAK YFFNKEGDFN NLTAAAFHKK SHLLVTGFAS ENSBTAP00000009343/1-919 KATPAAEEQQ GKVKYSRVAK YFFNKEGDFN NLTAAAYHKK VHLLVTGFAS ENSTTRP00000006368/1-852 KAAPTAEEQQ GKVKYSRAAK YFFNKEGDFN HLTAAAYHKK VHLLVTGFAS bmy_21206T0/1-1007 KAAPAAEEQR GKVQYSRVAK YFFNKEGDFN HLTAAAYHKK VHLLVTGFAS BACU004369/1-924 KAAPAAEEQR GKVQYSRVAK YFFNKEGDFN HLTAAAYHKK VHLLVTGFAS 401 450 ENSP00000291576/1-919 GIFHLHELPE FNLIHSLSIS DQSIASVAIN SSGDWIAFGC SGLGQLLVWE ENSBTAP00000009343/1-919 GIFHLHELPE FNLIHSLSIS DQRVASVAIN SSGDWIAFGC SGLGQLLVWE ENSTTRP00000006368/1-852 GIFHLHELPE FNLIHSLSVS DQRVSSIAIN GSGDWIAFGC SGLGQLLVWE bmy_21206T0/1-1007 GIFHLHELPE FNLIHSLSVS DQRVSSIAIN GSGDWIAFGC SGLGQLLVWE BACU004369/1-924 GIFHLHELPE FNLIHSLSVS DQRVSSIAIN GSGDWIAFGC SGLGQLLVWE 451 500 ENSP00000291576/1-919 WQSESYVLKQ QGHFNSMVAL AYSPDGQYIV TGGDDGKVKV WNTLSGFCFV ENSBTAP00000009343/1-919 WQSESYVLKQ QGHFNSMVSL AYSPDGQYIV TGGDDGKVKV WNSLSGFCFV ENSTTRP00000006368/1-852 WQSESYVLKQ QGHFNSMVSL AYSPDGQYIV TGGDDSKVKV WNTLSGFCFI bmy_21206T0/1-1007 WQSESYVLKQ QGHFNSMVSL AYSPDGQYIV TGGDDSKVKV WNTLSGFCFI BACU004369/1-924 WQSESYVLKQ QGHFNSMVSL AYSPDGQYIV TGGDDSKVKV WNTLSGFCFI 501 550 ENSP00000291576/1-919 TFTEHSSGVT GVTFTATGYV VVTSSMDGTV RAFDLHRYRN FRTFTSPRPT ENSBTAP00000009343/1-919 TFTEHSSGVT GVTFTTTGYV IVTSSMDGTV RAFDLHRYRN FRTFTSPRPT ENSTTRP00000006368/1-852 TFTEHSSGVT GVTFTSTGYV IVTSSMDGTV RAFDLHRYRN FRTFTSPRPT bmy_21206T0/1-1007 TFTEHSSGVT GVTFTTTGYV IVTSSMDGTV RAFDLHRYRN FRTFTSPRPT BACU004369/1-924 TFTEHSSGVT GVTFTTTGYV IVTSSMDGTV RAFDLHRYRN FRTFTSPRPT 551 600 ENSP00000291576/1-919 QFSCVAVDAS GEIVSAGAQD SFEIFVWSMQ TGRLLDVLSG HEGPISGLCF ENSBTAP00000009343/1-919 QFSCVAVDSS GEIVSAGAQD SFEVFIWSMQ TGRLLDVLSG HEGPISGLCF ENSTTRP00000006368/1-852 QFSCVAVNSS GDIVSAGAQD SFEILIWSMQ TGRLLDVLSG HEGPISGLCF bmy_21206T0/1-1007 QFSCVAVDSS GDIVSAGAQD SFEILIWSMQ TGRLLDVLSG HEGPISGLCF BACU004369/1-924 QFSCVAVDSS GDIVSAGAQD SFEILIWSMQ TGRLLDVLSG HEGPISGLCF 601 650 ENSP00000291576/1-919 NPMKSVLASA SWDKTVRLWD MFDSWRTKET LALTSDALAV TFRPDGAELA ENSBTAP00000009343/1-919 NPMKSVLASA SWDRTVHLWD MADSWRTTET LALTSDALAV TFRPDGAELA ENSTTRP00000006368/1-852 NPMKSVLASA SWDRTVRLWD MADSWRTTET LALTSDALAV TFRPDGAELA bmy_21206T0/1-1007 NPMKSVLASA SWDRTVRLWD MADSWRTTET LALTSDALAV TFRPDGAELA BACU004369/1-924 NPMKSVLASA SWDRTVRLWD MADSWRTTET LALTSDALAV TFCPDGAELA 651 700 ENSP00000291576/1-919 VATLNSQITF WDPENAVQTG SIEGRHDLKT GRKELDKITA KHAAKGKAFT ENSBTAP00000009343/1-919 VATLNSQITF WDPENAVQTG SIEGRHDLKT GRKELDKITA KHSAKGKAFT ENSTTRP00000006368/1-852 VATLDSQITF WDPENAAQTG SIEGRRDLKT GRKELDKITA KHAAKGKAFT bmy_21206T0/1-1007 VATLNSQITF WDPESAVQTG SIEGRHDLKT GRKELDKITA KHSAKGKAFT BACU004369/1-924 VATLNSQITF WDPESAVQTG SIEGRHDLKT GRKELDKITA KHSAKGKAFT 701 750 ENSP00000291576/1-919 ALCYSADGHS ILAGGMSKFV CIYHVREQIL MKRFEISCNL SLDAMEEFLN ENSBTAP00000009343/1-919 TLCYSADGQS ILAGGMSKFV CIYHVREQIL RKKFEISCNL SLDAMEEFLN ENSTTRP00000006368/1-852 TLCYSADGQS ILAGGMSKFV CIYHVKEQIL RKKFEISCNL SLDAMEEFLN bmy_21206T0/1-1007 TLCYSADGQS ILAGGMSKFV CIYHVKEQIL RKKFEISCNL SLDAMEEFLN BACU004369/1-924 TLCYSADGQS ILAGGMSKFV CIYHVKEQIL RKKFEISCNL SLDAMEEFLN 751 800 ENSP00000291576/1-919 RRKMTEFGNL ALIDQDAGQE DGVAIPLPGV RKGDMSSRHF KPEIRVTSLR ENSBTAP00000009343/1-919 RRKMTEFGNL ALIDQDAAEE GGVAIPLPGV KKGDMSSRHF KPEIRVTSLR ENSTTRP00000006368/1-852 RRKMTEFGNL ALIDQDAMEE GGV-IPLPGV KKGDMSSRHF KPEIRVTSLR bmy_21206T0/1-1007 RRKMTEFGNL ALIDQDATEE GGVTIPLPGV KKGDMSSRHF KPEIRVTSLR BACU004369/1-924 RRKMTEFGNL ALIDQDAMEE GGVTIPLPGV KKGDMSSRHF KPEIRVTSLR 801 850 ENSP00000291576/1-919 FSPTGRCWAA TTTEGLLIYS LDTRVLFDPF ELDTSVTPGR VREALRQQDF ENSBTAP00000009343/1-919 FSPTGRCWAA TTTEGLLIYS LDAQMLFDPF ELDTSVTPVR IRAALRQRDF ENSTTRP00000006368/1-852 FSPTGRCWAA TTTEGLLIYS LDARMLFDPF ELDTSVTPVQ IRAALCQRDF bmy_21206T0/1-1007 FSPTGRCWAA TTTEGLLIYS LDARMLFDPF ELDSSVTPAQ IRAALRQRDF BACU004369/1-924 FSPTGRCWAA TTTEGLLIYS LDARMLFDPF ELDTSVTPAQ MRAALCQRDF 851 900 ENSP00000291576/1-919 TRAILMALRL NESKLVQEAL EAVPRGEIEV VTSSLPELYV EKVLEFLASS ENSBTAP00000009343/1-919 TRAILLAFRL NERKLLQETL EAVPWDEIEV ISSSLPDLYV EKVLEFLASS ENSTTRP00000006368/1-852 TRAILMAFRL NERKLLQEAL ESVPWDEIEV ISSSLPDLYV EKALEFLASS bmy_21206T0/1-1007 TRAIPMAFRL HERKLLQEAL ESVPWDQIGV ISSSLPDLYV EKVLEFLASS BACU004369/1-924 TRAILTAFRL NERKLLQEAL ESVPWDEIGV ISSSLPDLYV EKVLEFLASS 901 950 ENSP00000291576/1-919 FEVSRHLEFY LLWTHKLLML HGQKLKSRAG TLLPVIQFLQ KSIQRHLDDL ENSBTAP00000009343/1-919 FEVSHHLEFY LIWTQKLLMV HGQKLKSRVG TLLPAVQFLQ KSIQRHLDDV ENSTTRP00000006368/1-852 FEESRHLEFY LIWTQKLLMA HGQKLKCRVG TLLPAVQFLQ KSIQRHWDDV bmy_21206T0/1-1007 FEESRHLEFY LIWTQKLLMV HGQKLKSRVG TLLPAVQFLQ KSIQRHWDDV BACU004369/1-924 FEESRHLEFY LIWTQKLLMV HGQQLKSRVG TLLPAVQFLQ KSIQRHWDDV 951 1000 ENSP00000291576/1-919 SKLCSWNHYN MQYALAVSKQ RGTKRSLDPL GSEEEAEASE ---DDSLHLL ENSBTAP00000009343/1-919 SKLCDWNRYN LQYALAVSKQ RGLKRPSEPL GSEEEAGASE DDDDDSLHLL ENSTTRP00000006368/1-852 SK-------- ---------- ---------- ---------- ---------- bmy_21206T0/1-1007 SKLCDWNRYN MQYALAVSKQ RGLKRPSEPP GSEEEADASE -DDDSSLHLL BACU004369/1-924 SKLCDWNRYN MQYALAVSKQ RGLKRPSEPP GSEEEADASE -DDDSSLHLL 1001 1050 ENSP00000291576/1-919 GGGGRDSEEE MLA ENSBTAP00000009343/1-919 GGGPGHADAP LA- ENSTTRP00000006368/1-852 ---------- --- bmy_21206T0/1-1007 RRGPGDGDGP LA- BACU004369/1-924 RRGPGDGDGP LA-