KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:38:02 2014 Check: 00 .. Name: ENSBTAP00000009348/1-1165 Len: 1208 Check: 7292 Weight: 1.00 Name: ENSTTRP00000001636/1-1141 Len: 1208 Check: 1984 Weight: 1.00 Name: bmy_00751T0/1-1058 Len: 1208 Check: 7384 Weight: 1.00 Name: BACU011933/1-1139 Len: 1208 Check: 4565 Weight: 1.00 // 1 50 ENSBTAP00000009348/1-1165 MNSCIIVLRL LLSGPFVFAP AWSYNLDVRH VQNFSFPLAG RHFGYRVLQV ENSTTRP00000001636/1-1141 ---------- ---------P AWSYNLDVRH VQNFSIPDAG RHFGYRVLQV bmy_00751T0/1-1058 MNSCIMVIRL LLSGPFLFAP TWSYNLDVRH VQNFSIPHAG RHFGYRVLQV BACU011933/1-1139 MNSCIMVIRL LLSGPFLFAP AWSYNLDVRH VQNFSIPHAG RHFGYRVLQV 51 100 ENSBTAP00000009348/1-1165 GNGVVVGAPS EGNSMGNLYQ CQPETGDCLP VTL-SSNYTS KYLGMTLATD ENSTTRP00000001636/1-1141 GNGVVVGAPG EGNNMGNLYQ CHPGTGHCLP VRLSSSNYTS KYLGMTLATD bmy_00751T0/1-1058 GNGVVVGAPG EGNNMGNLYQ CQPGTGHCLP VRLSSSNYTS KYLGMTLATD BACU011933/1-1139 GNGVVVGAPG EGNNMGNLYQ CQLGTGHCLP VRLSSSNYTS KYLGMTLATD 101 150 ENSBTAP00000009348/1-1165 PTSDNLLACD PGLSRTCDQN IYLSGLCYLI HENLRGPVLQ GHPGYQECIK ENSTTRP00000001636/1-1141 PTSDSLLACD PGLSRTCDQN IYLSGLCYLF HQNLSGPVLQ GHPGYQECIK bmy_00751T0/1-1058 PTSDSLLACD PGLSRTCDQN IYLSGLCYLL RQNLRGPVLQ GHPGYQECIK BACU011933/1-1139 PTSDSLLVCD PGLSRTCDQN IYLSGLCYLF RQNLRGPVLQ GHPGYQECIK 151 200 ENSBTAP00000009348/1-1165 GNVDLVFLFD GSMSLQQDEF EKIVDFMKDV MKKLSNSSYQ FAAVQFSTYF ENSTTRP00000001636/1-1141 GNVDLVFLFD GSMSLQQDEF QKILDFMKDV MKKLSNSSYQ XXXXXXXXXX bmy_00751T0/1-1058 GNVDLVFLFD GSRSLQQDEF QKILDFMKDV MKKLSNSSYQ FAAVQFSSTY BACU011933/1-1139 GNVDLVFLFD GSRSLQQDEF QKILDFMKDV MKKLSNSSYQ FAAVQFSSTY 201 250 ENSBTAP00000009348/1-1165 RTEFTFLDYI RQKDPDALLA GVKHMRLLTN TFGAINYVA- ---------- ENSTTRP00000001636/1-1141 XXXXXXXXXX NWKDPDTL-- PVKHMRLTN- -FGAINYVA- ---------- bmy_00751T0/1-1058 KTEFTFLDYV KWKDPDILLA KVKHMHLLTN TFGAINYVAL LWWVHDQTMS BACU011933/1-1139 KTEFTFLDYV KWKDPDILLA KVKHMRLLTN TFGAINYVA- ---------- 251 300 ENSBTAP00000009348/1-1165 ---------- --KEVFRPDL GARPDATKVL IIITDGEATD EHNIDAAKDI ENSTTRP00000001636/1-1141 ---------- --TKVFRQEL GARPDATKV- IIITDGEATD KANIDAAKDI bmy_00751T0/1-1058 IEKMAASVPQ FRTKVFRQEL GARPDATKVL IIITDGEATD KANIDVAKDI BACU011933/1-1139 ---------- --TEVFRQEL GARPDATKVL IIITDGEATD KANIDVAKDI 301 350 ENSBTAP00000009348/1-1165 IRYIIGIGKN FKTKESQEAL HQFASKPVEE FVKILDTFEK LKDLFTELQK ENSTTRP00000001636/1-1141 IRYIIGIGKY FKTKESQETL HEFASKPAEE FVKILDTFEK LKDLFTELQK bmy_00751T0/1-1058 IRYIIGIGKY FKTKESQETL HEFASKPAEE FVKILDTFEK LKDLFTELQK BACU011933/1-1139 IRYIIGIGKY FKTKESQETL HEFASKPAEE FVKILDTFEK LKDLFTELQK 351 400 ENSBTAP00000009348/1-1165 KIYVIEGTSK QDLTSFNMEL SSSGISADLS EGHGVVGAVG AKDWAGGFLD ENSTTRP00000001636/1-1141 KIYVIEXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_00751T0/1-1058 KIYVIEGTSK QDLTSFNMEL SSSGISADLS RGHGIVGAAG AKDWAGGFLD BACU011933/1-1139 KIYVIEGTSK QDLTSFNMEL SSSGISADLS RGHGIVGAAG AKDWAGGFLD 401 450 ENSBTAP00000009348/1-1165 LKADLKSSTF VGNEPLTVES RAGYL----- ---------- -GYTVTWLPS ENSTTRP00000001636/1-1141 XXXXXXXXXX XXXXXXXXXX XXXXX----- ---------- -XYTVTWLPS bmy_00751T0/1-1058 LKTDLRGDTF VGNEPLTPEV RAGYLAAVXF LTPSPALAVS SGYTVTWLPS BACU011933/1-1139 LKTDLRGDTF VGNEPLTPEV RTGYL----- ---------- -GYTVTWLPS 451 500 ENSBTAP00000009348/1-1165 RGTMSLLATG APRYQHVGRV LLFQQPKRGG PWSQIQEIDG IQIGSYFGGE ENSTTRP00000001636/1-1141 RRTTSLLAAG APRYQHVGRV LLFQEPKGGE RWSQIQKIDG IQIGSYFGGE bmy_00751T0/1-1058 RRTPSLLAAG APRYQHVGRV LLFQEPKGGE PWSQIQKIDG IQIGSYFGGE BACU011933/1-1139 RRTPSLLAAG APRYQHVGRV LLFQEPKGGE PWSQIQKIDG IQIGSYFGGE 501 550 ENSBTAP00000009348/1-1165 LCGVDVDRDG ETELLLIAAP LYYGEQRGGR VFIYQKIQLE FQMVSELQGE ENSTTRP00000001636/1-1141 LCGVDMDQDG ETELLLVGAP LFYGEQRGGR VFIYQRKKLG FAMVSELHGD bmy_00751T0/1-1058 LCGVDMDQDG ETELLLVGAP LFYGEQRGGR VFIYQRKKLG FEMVSELQGD BACU011933/1-1139 LCGVDMDQDG ETELLLVGAP LFYGEQRGGR VFIYQRKKLG FEMVSELQGD 551 600 ENSBTAP00000009348/1-1165 TGYPLGRFGA AIAALTDING DELTDVAVGA PLEEQGAVYI FNGQQGGLSP ENSTTRP00000001636/1-1141 PGYPLGRFGA VIAALTDING DELTDVAVGA PLEEQGAVYI FNGQQAGLSP bmy_00751T0/1-1058 PGYPLGRFGA VIAALTDING DELTDVAVGA PLEEQGAVYI FNGQQAGLSP BACU011933/1-1139 PGYPLGRFGA VIAALTDING DELTDVAVGA PLEEQGAVYI FNGQQAGLSP 601 650 ENSBTAP00000009348/1-1165 RPSQRIEGTQ MFSGIQWFGR SIHGVKDLGG DGLADVAVGA EGQVIVLSSR ENSTTRP00000001636/1-1141 WPSQRIEGTR MLPGIRWFGR SIHGVKDLGR DGLVDVAVGA ESQVIVLSSR bmy_00751T0/1-1058 WPSQRIEGTR MLPGIRWFGR SIHGVKDLGG DGLVDVAVGA ESQG------ BACU011933/1-1139 WPSQRIEGTR MLPGIRWFGR SIHGVKDLGG DGLVDVAVGA ESQVIVLSSR 651 700 ENSBTAP00000009348/1-1165 PVVDIITSVS FSPAEIPVHE VECSYSTSNQ KKEGVNLTVC FQVKSLISTF ENSTTRP00000001636/1-1141 PVVDIITTMS FSPAEIPVHE VECSHSSSDK KKEGVNITVC FQVKSLISQF bmy_00751T0/1-1058 ---------T WLPTSLTL-- --CSWMAIGA EAGG-----C SQ-------- BACU011933/1-1139 PVVDIITAMS FSPAEIPVHE VECSYSTSDK KKEGVNITVC FQVKSLISQF 701 750 ENSBTAP00000009348/1-1165 QGHLVANLTY TLQLDGHRTR SRGLFPGGKH KLIGNTAVTP VKSCFVFWFH ENSTTRP00000001636/1-1141 KGHLVANLTY TLQLDGHRTR SRGLFPEGKH ELSRNTAVTS VKSCTGFWFH bmy_00751T0/1-1058 KGN------- ---------- ---------- ---------- ---------- BACU011933/1-1139 KGL------- ---------- --RQLATGMS SFIKYGQGVP LTGS------ 751 800 ENSBTAP00000009348/1-1165 FPICIQDLIS PINVSLSYSL WEEEGTPRDP RALDRDIPPI LKPSPHLETK ENSTTRP00000001636/1-1141 FPXXXXXXXX PINVS-NYSL WEEEGTPRDQ STQGKDIQPI LRPSPHSETK bmy_00751T0/1-1058 -MSSAGTQLS PQ-------- ---------- ---------- ---------- BACU011933/1-1139 -MVCTQDLIS PINVSLNYSL WEEEGTPRDQ RAQGKDIQPI LRPSPHSETK 801 850 ENSBTAP00000009348/1-1165 EIPFEKNCGE DKNCEADLKL AFSDMRSKIL RLTPSASLSV RLTLRNTAED ENSTTRP00000001636/1-1141 EIPFEKNCGE DKKCEANLGL T-STARSRVL RLTPSASLSV GLTLSNLGED bmy_00751T0/1-1058 ---------- ---SSPALGS G-STSRSRVL HLTPSASLSV ELTLSNLGED BACU011933/1-1139 EIPFEKNCGE DKKCEADLGL T-STARSRVL RLTPSASLSV GLTLSNLGED 851 900 ENSBTAP00000009348/1-1165 AYWVQVTLSF PQGLSFRKVE ILKPHSHVPV GCEELPEEAV VHSRALSCNV ENSTTRP00000001636/1-1141 AYWVHLSLSF PRGLSFRKVE TLKPHSQIPV SCEELPEETK LQSRALSCNV bmy_00751T0/1-1058 AYWVHLSLSF PRGLSFRKVE TLKPHSQIPV SCEELPEETK LQSRALSCNV BACU011933/1-1139 AYWVHLSLSF PRGLSFRKVE TLKPHSQIPV SCEELPEETK LQSRALSCNV 901 950 ENSBTAP00000009348/1-1165 SSPIFGEDSM VSAQVMFNTL QKGSWGDFIE LQANVSCNNE DSSLLEDNSA ENSTTRP00000001636/1-1141 SSPIFKAGSL VDIQVMFHTL LNGSWGDFVE VHANVSCNNE DSGLLGDNSA bmy_00751T0/1-1058 SSPIFKAGSL VHIQVMFHTL LNGSWGDFVE VHANVSCNNE DSGLLRDNSA BACU011933/1-1139 SSPIFKADTL VDIQVMFHTL LNGSWGDFVE VHANVSCNNE DSGLLEDNSA 951 1000 ENSBTAP00000009348/1-1165 TTSIPVMYPI NVLTKDQENS TLYISFTPKS PKIHHVKHIY QVRIQPSNYD ENSTTRP00000001636/1-1141 TTSIPVMYPI NILTKDQENS TLYISFTPKG PKIHHVKHIY QXXXXXXXXX bmy_00751T0/1-1058 TTSIPVMYPI NILTKDQENS TLYISFTPKG PKIHHVKHIY QVRIQPSVYD BACU011933/1-1139 TTSIPVMYPI NILTKDQENS TLYISFTPKG PKIHDVKHIY QVRIQPSVYD 1001 1050 ENSBTAP00000009348/1-1165 -NMPPLEALV RVPRVHSEGL ITHKWSIQME PPVNCSPRNL ESPSDEAESC ENSTTRP00000001636/1-1141 XXXXXXXXXX RVPQ-HGEGP ITHKWSVQTE PPVTCHREEL ESPSDVAEPC bmy_00751T0/1-1058 HNVPTLEALV RVPQPHGEGP IMHKWSVQME PPVTCHREDL ESPSDVAEPC BACU011933/1-1139 HNVPTLEALV RVPQPHGEGP IMQKWSVQME PPVTCHREDL ESPSDVAEPC 1051 1100 ENSBTAP00000009348/1-1165 SFGTEFRCPI DFRQEILVQV NGMVELRGTI KASSMLSLCS SLAISFNSSK ENSTTRP00000001636/1-1141 SLGAEFRCPV VFRQEILVQV IGTVELVGEI KASSMFSLCS SLSISFSSSK bmy_00751T0/1-1058 SLGAEFRCPV VFRQEILVQV IGTVELVGEI KAASMFSLCS SLSISFNSSK BACU011933/1-1139 SLGAEFRCPV VFRQEILVQV IGTVELVGEI KASSMFSLCS SLSISFNSSK 1101 1150 ENSBTAP00000009348/1-1165 HFHLYGRNAS MAQVVMKVDL VYEKEMLYLY VLSGIGGLLL LFLIFIALYK ENSTTRP00000001636/1-1141 XXXXXXXXXX XXXVIMKVDV VYEKEMVYLY VLSSIGGLLL LLLIFLALYK bmy_00751T0/1-1058 HFHLYGSNAS LAQVIMKVDV VYEKEMVYLY VLSSIGGLLL LLLIFLALYK BACU011933/1-1139 HFHLYGSNAS LAQVIMKVDV VYEKEMVYLY VLSSIGGLLL LLLIFLALYK 1151 1200 ENSBTAP00000009348/1-1165 -VGFFKRNLK EKMEANVDAS SEIPGEDAGQ PELEKECKDP GCLEPLQKTD ENSTTRP00000001636/1-1141 -VGFFKRNLK ERMEATVDAS NETTGEDAGQ PASGEEAKDP GCLEPLHEKE bmy_00751T0/1-1058 DTGGILSNSK ------VSSC PAVGGEK--Q HLVPQAVTFD GSLLPTAE-- BACU011933/1-1139 -VGFFKRNLK ERMEATVDAS NEITGEDAGQ PVSGEEAKDP GCLEPLHEEE 1201 1250 ENSBTAP00000009348/1-1165 -EDGSGGD ENSTTRP00000001636/1-1141 AQDGGGRD bmy_00751T0/1-1058 -------- BACU011933/1-1139 ARDGAE--