KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:02 2014 Check: 00 .. Name: ENSTTRP00000007394/1-460 Len: 476 Check: 6820 Weight: 1.00 Name: ENSBTAP00000009350/1-457 Len: 476 Check: 3521 Weight: 1.00 Name: ENSP00000293261/1-459 Len: 476 Check: 748 Weight: 1.00 Name: bmy_06436T0/1-347 Len: 476 Check: 3008 Weight: 1.00 Name: BACU002170/1-458 Len: 476 Check: 402 Weight: 1.00 // 1 50 ENSTTRP00000007394/1-460 MTVERWLRLR GKGLAMLHVT RGFWGSRVRV WPLLPALLDH PRALSSLAAK ENSBTAP00000009350/1-457 ---------- -----MLHVT RGVWGSIVRV WPLLPSFLGH SRALSSLEAK ENSP00000293261/1-459 MTVELWLRLR GKGLAMLHVT RGVWGSRVRV WPLLPALLGP PRALSSLAAK bmy_06436T0/1-347 MTVERWLRLR GKGLAMLHVT RGVWGSRVRV WPLLPALLGH PRALSSLAAK BACU002170/1-458 MTVERWLRLR GKGLAMLHVT RGVWGSRVRV WPLLPALLGH TWALSSLAAK 51 100 ENSTTRP00000007394/1-460 MGEYRKMWNL TEPRNWSQQY RERFIPFSKE QLLRLLIKEF HSSPAEKAAL ENSBTAP00000009350/1-457 MGEYRKMWNP TEPRDWAQQY RERHIPFSKE QLLRLLIQEF HSTPAEKAAL ENSP00000293261/1-459 MGEYRKMWNP REPRDWAQQY RERFIPFSKE QLLRLLIQEF HSSPAEKAAL bmy_06436T0/1-347 MGEYRKMWNP TEPRDWAQQY RERFIPFSKE QLLRLLIK-- ---------- BACU002170/1-458 MGEYRKMWNP TEPRDWAQQY RERFIPFSKE QLLRLLIKEF HSSPAEKAAL 101 150 ENSTTRP00000007394/1-460 EEFVAHVNFC TLFHYHHILA QLQALYDPIN PDRETLEQPS LTDPQRLSNE ENSBTAP00000009350/1-457 EEFTAHVDFC TLFHYHHVLT QLQALYDPIN PDRETLDQPS LTDPQRLSNE ENSP00000293261/1-459 EAFSAHVDFC TLFHYHQILA RLQALYDPIN PDRETLDQPS LTDPQRLSNE bmy_06436T0/1-347 ---------- ---------- ---------- ---------- ---------- BACU002170/1-458 EEFVTHVNFC TLFHYHHILA QLQALYDPIN PDRDTLDQPS LTDPQRLSNE 151 200 ENSTTRP00000007394/1-460 QEVLRALEPL LAQANFSPLS EDTLAYALVV HHPQDVVQXX XXXXXXXXXX ENSBTAP00000009350/1-457 KEVLQALEPL LAQANFSPLT EDTLAYALVV HHPQDEVQVT INLDQYIYMH ENSP00000293261/1-459 QEVLRALEPL LAQANFSPLS EDTLAYALVV HHPQDEVQVT VNLDQYVYIH bmy_06436T0/1-347 -EVLRALEPL LAQANFSPLS EDTLAYALVV HHPQDEVQVT INLDQYIYMQ BACU002170/1-458 QEVLRALEPL LAQANFSPLS EDTLAYALVV HHPQDEVQVT INLDQYIYMQ 201 250 ENSTTRP00000007394/1-460 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRYFKRVVL AARAKRGHLV ENSBTAP00000009350/1-457 FWALGQRVGK MPRKSSVGSK RFFF-KSPPA ERRYFKRVIL AARTKKGHLV ENSP00000293261/1-459 FWALGQRVGQ MPLKSSVGSR RGFFTKLPPA ERRYFKRVVL AARTKRGHLV bmy_06436T0/1-347 FWALGQRVGQ MPPKSSVGSK RGFF-RSPPA ERRYFKRVVL AARTKRGHLV BACU002170/1-458 FWALGQRVGQ MPRKSSVGSK RGFF-RSPPA ERRYFKRVVL AARTKRGHLV 251 300 ENSTTRP00000007394/1-460 LKSFKDIPLE GLEQLLPELK VRTPTLQRAL LNFTLVVSGV VFFVNVGMVV ENSBTAP00000009350/1-457 LKSFKDTPLE GLEQLLPELK VRTSTLQRAI LNVTLIVSGV VFFVNVGMVV ENSP00000293261/1-459 LKSFKDTPLE GLEQLLPELK VRTPTLQRAL LNLMLVVSGV AIFVNVGMVV bmy_06436T0/1-347 LKSFKDMPLE GLEQLLPELK VRTPTLQRAL LNVTLVVSGV VFFVNVGMVV BACU002170/1-458 LKSFKDMPLE GLEQLLPELK VRTPTLQRAL LNVTLVVSGV VFFVNVGMVV 301 350 ENSTTRP00000007394/1-460 LSDLKMATSL LLLLFTAFMG LRASKMFGQR RNVQALELAH MLYYRSTSNN ENSBTAP00000009350/1-457 LSDLKMATSL LLLLFAAFMG LRAAKMFGHR RSAQALELAH MLYYRSTSNN ENSP00000293261/1-459 LTDLKVATSL LLLLFAIFMG LRASKMFGQR RSAQALELAH MLYYRSTSNN bmy_06436T0/1-347 LSDLKMATSL LLLLFTAFMG LRASK--GQQ GWGKG----- ---------- BACU002170/1-458 LSDLKMATSL LLLLFTAFMG LRAAKMFGQR RSVQALELAH MLYYRSTSNN 351 400 ENSTTRP00000007394/1-460 SELLSALALR AQDEHTKEVM LAHSFLTRRP RGTQGQPEEE TSQWLQSEVE ENSBTAP00000009350/1-457 AELLSALVLR AQDEHTKETL LAHSFLARRP GGAKGPP-EE TSQWLQSEVE ENSP00000293261/1-459 SELLSALALR AQDEHTKEAL LAHSFLARRP GGTQGSP-EE TSRWLRSEVE bmy_06436T0/1-347 ---------- ---------- -------SRR GGA-----KE TCRWLQSEVE BACU002170/1-458 SELLSALALR AQDEHTKEAL LAHSFLARRP RGARGQP-EE TCQWLQSEVE 401 450 ENSTTRP00000007394/1-460 NWLLAQSGCD VAFNGTRALA HLQALTPSIG MYPPPGFPKL DPLATITS-- ENSBTAP00000009350/1-457 NWLLAQSGCD VAFNGKRALA HLQALPPTVG MYPPPGLPKL DLLATLSS-- ENSP00000293261/1-459 NWLLAKSGCE VTFNGTRALA HLQALTPSMG LYPPPGFPKL DPVAPITSEP bmy_06436T0/1-347 NWLLAQSGCD VAFNGTRALA HLQALTPSIG MYPPPGFPKL DPLATITS-- BACU002170/1-458 NWLLAQSGCD VAFNGTRALA HLQALTPSIG MYPPPGFPKL DLLATITS-- 451 500 ENSTTRP00000007394/1-460 PKAAPP---S TDDPL----- ------ ENSBTAP00000009350/1-457 PKSAPSDDNS LEKPLGPAQP SHLVGN ENSP00000293261/1-459 PQATPS---S NIS------- ------ bmy_06436T0/1-347 PKAAPP---S TDDPL----- ------ BACU002170/1-458 PKAAPA---S TDEPL----- ------