KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:38:04 2014 Check: 00 ..
Name: ENSP00000221130/1-522 Len: 522 Check: 3392 Weight: 1.00
Name: BACU005219/1-480 Len: 522 Check: 5968 Weight: 1.00
Name: ENSBTAP00000009363/1-420 Len: 522 Check: 2926 Weight: 1.00
Name: bmy_08255T0/1-316 Len: 522 Check: 8101 Weight: 1.00
Name: ENSTTRP00000011833/1-518 Len: 522 Check: 133 Weight: 1.00
//
1 50
ENSP00000221130/1-522 MALLPRALSA GAGPSWRRAA RAFRGFLLLL PEPAALTRAL SRAMACRQEP
BACU005219/1-480 ---------- ---MGPQRCA VRFPTRVGVR IPAG----FD ERSVKGLFRG
ENSBTAP00000009363/1-420 ---------- ---------- ---------- ---------- ----------
bmy_08255T0/1-316 ---------- ---------- ---------- ---------- ---MACRQEP
ENSTTRP00000011833/1-518 MALPARTLSA SEGLGWRQAA RTFSGYAPLG PGAC----AF SRAMAFRQGP
51 100
ENSP00000221130/1-522 QPQGPPPAAG AVASYDYLVI GGGSGGLASA RRAAELGARA AVVESHKLGG
BACU005219/1-480 PRSCACVCSS AGECWMCTQK G--------- --------RT FISPSFRTPL
ENSBTAP00000009363/1-420 ---------- ---------- ---------- ---------- ----------
bmy_08255T0/1-316 QPSCPPPAAG VAACYDYLVI GGGSGGLASA RRAAELGARA AVVESHKLGG
ENSTTRP00000011833/1-518 QSSCPPPAAG VAACYDYLVI GGGSGGLASA RRAAELGARA AVVESHKLGG
101 150
ENSP00000221130/1-522 TCVNVGCVPK KVMWNTAVHS EFMHDHADYG FPSCEGKFNW RVIKEKRDAY
BACU005219/1-480 TYL------- -VMWNTAVHS EFMHDHVDYG FQSCEGKFSW RVIKEKRDAY
ENSBTAP00000009363/1-420 --VNVGCVPK KVMWNTAVHS EFMHDHVDYG FQSCESKFNW RIIKEKRDAY
bmy_08255T0/1-316 TC-------- -VMWNTAVHS EFMHDHVDYG FQSCEGKFSW RVIKEKRDAY
ENSTTRP00000011833/1-518 TCVNVGCVPK KVMWNTAVHS EFMHDHVDYG FQSCEGKFSW RVIKEKRDAY
151 200
ENSP00000221130/1-522 VSRLNAIYQN NLTKSHIEII RGHAAFTSDP KPTIEVSGKK YTAPHILIAT
BACU005219/1-480 VSRLNTIYQD NLIKSHIEII RGHAVFTCDP QPTVEVNGKK YTAPHILIAT
ENSBTAP00000009363/1-420 VSRLNTIYQN NLTKSHIDII HGHAAFTCDP QPTVEVNGKK YTAPHILIAT
bmy_08255T0/1-316 VSRLNTIYQN NLI------- ---------- ---------- ----------
ENSTTRP00000011833/1-518 VSRLNTIYQN NLIKSHIEII RGHAVFTGDA QPTVEVNGEK YTAPHILIAT
201 250
ENSP00000221130/1-522 GGMPSTPHES QIPGASLGIT SDGFFQLEEL PGRSVIVGAG YIAVEMAGIL
BACU005219/1-480 GGVPSLPQES QIPGASLGIT SDGFFQLEEL PSRSVIVGAG YIAVEIAGIL
ENSBTAP00000009363/1-420 GGVPSVPQES QIPGASLGIT SDGFFQLEEL PRRSVIVGAG YIAVEIAGIL
bmy_08255T0/1-316 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000011833/1-518 GGVPMLPQES QIPGASLGIT SDGFFQLEEL PGRSVIVGAG YIAVEIAGIL
251 300
ENSP00000221130/1-522 SALGSKTSLM IRHDKVLRSF DSMISTNCTE ELENAGVEVL KFSQVKEVKK
BACU005219/1-480 SALGSKTSLM IRHDKVLRSF DSIISSNCTE ELENAGIEVL KYSQVKEVKK
ENSBTAP00000009363/1-420 SALGSKTSIM IRHDKVLRTF DSIISSNCTE ELENAGIEVL KYSQVREVKK
bmy_08255T0/1-316 ---------- ----KVLRSF DSIISSNCTE ELENAGIEVL KYSQ------
ENSTTRP00000011833/1-518 SALGSKTSLI IRHDKVLRSF DSIISSNCTE ELENAGIEVL KYSQVKEVKK
301 350
ENSP00000221130/1-522 TLSGLEVSMV TAVPGRLPVM TMIPDVDCLL WAIGRVPNTK DLSLNKLGIQ
BACU005219/1-480 TSSGLELCMV TSIPGRKPTL TTIPDVDCLL WAIGRDPNSR DLNLNKLGIQ
ENSBTAP00000009363/1-420 TSSGLELRMV TSIPGREPTF TTIADVDCLL WAIGRDPNSW GLNLNKLGIQ
bmy_08255T0/1-316 ---------- ---------- ---------- ---------- -------GIQ
ENSTTRP00000011833/1-518 TSSGLELCMV TSVPGRKPTL TTIPDVDCLL WAIGRDPNSR GLNLNKLGIQ
351 400
ENSP00000221130/1-522 TDDKGHIIVD EFQNTNVKGI YAVGDVCGKA LLTPVAIAAG RKLAHRLFEY
BACU005219/1-480 TDDKGHILVD EFQNTNVKGV YAVGDVCGKA LLTPVAIAAG RKLAHRLFEC
ENSBTAP00000009363/1-420 TDDKGHIIVD EFQNTNVKGV YAVGDVCGKA LLTPVAIAAG RKLAHRLFEC
bmy_08255T0/1-316 TDDKGHILVD EFQNTNVKGV YAVGDVCGKA LLTPVAIAAG RKLAHRLFEC
ENSTTRP00000011833/1-518 TDDKGHILVD EFQNTNVKGV YAVGDVCGKA LLTPVAIAAG RKLAHRLFEC
401 450
ENSP00000221130/1-522 KEDSKLDYNN IPTVVFSHPP IGTVGLTEDE AIHKYGIENV KTYSTSFTPM
BACU005219/1-480 KEDSKLDYDN IPTVVFSHPP IGTVGLTEDE AIYKYGKENV KIYSTTFTPM
ENSBTAP00000009363/1-420 KEDSKLDYDN IPTVVFSHPP IGTVGLTEDE AIYKYGKENV KTYSTTFTPM
bmy_08255T0/1-316 KEDSKLDYDN IPTVVFSHPP IGTVGLTEDE AIYKYGKENV KIYSTTFTPM
ENSTTRP00000011833/1-518 KEDSKLDYDN IPTVVFSHPP IGTVGLTEDE AIYKYGKENV KIYSTTFTPM
451 500
ENSP00000221130/1-522 YHAVTKRKTK CVMKMVCANK EEKVVGIHMQ GLGCDEMLQG FAVAVKMGAT
BACU005219/1-480 YHAVTKRKTK CVMKMVCANK EEQVVGIHMQ GIGCDEMLQG FAVAVKMGAT
ENSBTAP00000009363/1-420 YHAVTKRKTK CVMKMVCANK EEKVVGIHMQ GIGCDEMLQG FAVAVKMGAT
bmy_08255T0/1-316 YHAVTKRKTK CVMKMVCANK EEKVVGIHMQ GIGCDEMLQG FAVAVKMGAT
ENSTTRP00000011833/1-518 YHAVTKRKTK CVMKMVCANK EEKVVGIHMQ GIGCDEMLQG FAVAVKMGAT
501 550
ENSP00000221130/1-522 KADFDNTVAI HPTSSEELVT LR
BACU005219/1-480 KSDFDNTVAI HPTSSEELVT LR
ENSBTAP00000009363/1-420 KSDFDNTVAI HPTSSEELVT LR
bmy_08255T0/1-316 KSDFDNTVAI HPTSSEELVT LR
ENSTTRP00000011833/1-518 KSDFDNTVAI HPTSSEELVT LR