KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:04 2014 Check: 00 .. Name: ENSP00000221130/1-522 Len: 522 Check: 3392 Weight: 1.00 Name: BACU005219/1-480 Len: 522 Check: 5968 Weight: 1.00 Name: ENSBTAP00000009363/1-420 Len: 522 Check: 2926 Weight: 1.00 Name: bmy_08255T0/1-316 Len: 522 Check: 8101 Weight: 1.00 Name: ENSTTRP00000011833/1-518 Len: 522 Check: 133 Weight: 1.00 // 1 50 ENSP00000221130/1-522 MALLPRALSA GAGPSWRRAA RAFRGFLLLL PEPAALTRAL SRAMACRQEP BACU005219/1-480 ---------- ---MGPQRCA VRFPTRVGVR IPAG----FD ERSVKGLFRG ENSBTAP00000009363/1-420 ---------- ---------- ---------- ---------- ---------- bmy_08255T0/1-316 ---------- ---------- ---------- ---------- ---MACRQEP ENSTTRP00000011833/1-518 MALPARTLSA SEGLGWRQAA RTFSGYAPLG PGAC----AF SRAMAFRQGP 51 100 ENSP00000221130/1-522 QPQGPPPAAG AVASYDYLVI GGGSGGLASA RRAAELGARA AVVESHKLGG BACU005219/1-480 PRSCACVCSS AGECWMCTQK G--------- --------RT FISPSFRTPL ENSBTAP00000009363/1-420 ---------- ---------- ---------- ---------- ---------- bmy_08255T0/1-316 QPSCPPPAAG VAACYDYLVI GGGSGGLASA RRAAELGARA AVVESHKLGG ENSTTRP00000011833/1-518 QSSCPPPAAG VAACYDYLVI GGGSGGLASA RRAAELGARA AVVESHKLGG 101 150 ENSP00000221130/1-522 TCVNVGCVPK KVMWNTAVHS EFMHDHADYG FPSCEGKFNW RVIKEKRDAY BACU005219/1-480 TYL------- -VMWNTAVHS EFMHDHVDYG FQSCEGKFSW RVIKEKRDAY ENSBTAP00000009363/1-420 --VNVGCVPK KVMWNTAVHS EFMHDHVDYG FQSCESKFNW RIIKEKRDAY bmy_08255T0/1-316 TC-------- -VMWNTAVHS EFMHDHVDYG FQSCEGKFSW RVIKEKRDAY ENSTTRP00000011833/1-518 TCVNVGCVPK KVMWNTAVHS EFMHDHVDYG FQSCEGKFSW RVIKEKRDAY 151 200 ENSP00000221130/1-522 VSRLNAIYQN NLTKSHIEII RGHAAFTSDP KPTIEVSGKK YTAPHILIAT BACU005219/1-480 VSRLNTIYQD NLIKSHIEII RGHAVFTCDP QPTVEVNGKK YTAPHILIAT ENSBTAP00000009363/1-420 VSRLNTIYQN NLTKSHIDII HGHAAFTCDP QPTVEVNGKK YTAPHILIAT bmy_08255T0/1-316 VSRLNTIYQN NLI------- ---------- ---------- ---------- ENSTTRP00000011833/1-518 VSRLNTIYQN NLIKSHIEII RGHAVFTGDA QPTVEVNGEK YTAPHILIAT 201 250 ENSP00000221130/1-522 GGMPSTPHES QIPGASLGIT SDGFFQLEEL PGRSVIVGAG YIAVEMAGIL BACU005219/1-480 GGVPSLPQES QIPGASLGIT SDGFFQLEEL PSRSVIVGAG YIAVEIAGIL ENSBTAP00000009363/1-420 GGVPSVPQES QIPGASLGIT SDGFFQLEEL PRRSVIVGAG YIAVEIAGIL bmy_08255T0/1-316 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011833/1-518 GGVPMLPQES QIPGASLGIT SDGFFQLEEL PGRSVIVGAG YIAVEIAGIL 251 300 ENSP00000221130/1-522 SALGSKTSLM IRHDKVLRSF DSMISTNCTE ELENAGVEVL KFSQVKEVKK BACU005219/1-480 SALGSKTSLM IRHDKVLRSF DSIISSNCTE ELENAGIEVL KYSQVKEVKK ENSBTAP00000009363/1-420 SALGSKTSIM IRHDKVLRTF DSIISSNCTE ELENAGIEVL KYSQVREVKK bmy_08255T0/1-316 ---------- ----KVLRSF DSIISSNCTE ELENAGIEVL KYSQ------ ENSTTRP00000011833/1-518 SALGSKTSLI IRHDKVLRSF DSIISSNCTE ELENAGIEVL KYSQVKEVKK 301 350 ENSP00000221130/1-522 TLSGLEVSMV TAVPGRLPVM TMIPDVDCLL WAIGRVPNTK DLSLNKLGIQ BACU005219/1-480 TSSGLELCMV TSIPGRKPTL TTIPDVDCLL WAIGRDPNSR DLNLNKLGIQ ENSBTAP00000009363/1-420 TSSGLELRMV TSIPGREPTF TTIADVDCLL WAIGRDPNSW GLNLNKLGIQ bmy_08255T0/1-316 ---------- ---------- ---------- ---------- -------GIQ ENSTTRP00000011833/1-518 TSSGLELCMV TSVPGRKPTL TTIPDVDCLL WAIGRDPNSR GLNLNKLGIQ 351 400 ENSP00000221130/1-522 TDDKGHIIVD EFQNTNVKGI YAVGDVCGKA LLTPVAIAAG RKLAHRLFEY BACU005219/1-480 TDDKGHILVD EFQNTNVKGV YAVGDVCGKA LLTPVAIAAG RKLAHRLFEC ENSBTAP00000009363/1-420 TDDKGHIIVD EFQNTNVKGV YAVGDVCGKA LLTPVAIAAG RKLAHRLFEC bmy_08255T0/1-316 TDDKGHILVD EFQNTNVKGV YAVGDVCGKA LLTPVAIAAG RKLAHRLFEC ENSTTRP00000011833/1-518 TDDKGHILVD EFQNTNVKGV YAVGDVCGKA LLTPVAIAAG RKLAHRLFEC 401 450 ENSP00000221130/1-522 KEDSKLDYNN IPTVVFSHPP IGTVGLTEDE AIHKYGIENV KTYSTSFTPM BACU005219/1-480 KEDSKLDYDN IPTVVFSHPP IGTVGLTEDE AIYKYGKENV KIYSTTFTPM ENSBTAP00000009363/1-420 KEDSKLDYDN IPTVVFSHPP IGTVGLTEDE AIYKYGKENV KTYSTTFTPM bmy_08255T0/1-316 KEDSKLDYDN IPTVVFSHPP IGTVGLTEDE AIYKYGKENV KIYSTTFTPM ENSTTRP00000011833/1-518 KEDSKLDYDN IPTVVFSHPP IGTVGLTEDE AIYKYGKENV KIYSTTFTPM 451 500 ENSP00000221130/1-522 YHAVTKRKTK CVMKMVCANK EEKVVGIHMQ GLGCDEMLQG FAVAVKMGAT BACU005219/1-480 YHAVTKRKTK CVMKMVCANK EEQVVGIHMQ GIGCDEMLQG FAVAVKMGAT ENSBTAP00000009363/1-420 YHAVTKRKTK CVMKMVCANK EEKVVGIHMQ GIGCDEMLQG FAVAVKMGAT bmy_08255T0/1-316 YHAVTKRKTK CVMKMVCANK EEKVVGIHMQ GIGCDEMLQG FAVAVKMGAT ENSTTRP00000011833/1-518 YHAVTKRKTK CVMKMVCANK EEKVVGIHMQ GIGCDEMLQG FAVAVKMGAT 501 550 ENSP00000221130/1-522 KADFDNTVAI HPTSSEELVT LR BACU005219/1-480 KSDFDNTVAI HPTSSEELVT LR ENSBTAP00000009363/1-420 KSDFDNTVAI HPTSSEELVT LR bmy_08255T0/1-316 KSDFDNTVAI HPTSSEELVT LR ENSTTRP00000011833/1-518 KSDFDNTVAI HPTSSEELVT LR